Su Ding

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Verified

Su verified their affiliation via an institutional email.

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• Dr. rer. nat.
• PostDoc at NIOZ Royal Netherlands Institute for Sea Research

Structurally diverse, specialized lipids are crucial components of microbial membranes and other organelles and play essential roles in ecological functioning. The detection of such lipids in the environment can reveal not only the occurrence of specific microbes but also the physicochemical conditions to which they are adapted to. Traditionally, l...

Sulfurimonas species are among the most abundant sulfur-oxidizing bacteria in the marine environment. They are capable of using different electron acceptors, this metabolic flexibility is favorable for their niche adaptation in redoxclines. When oxygen is depleted, most Sulfurimonas spp. (e.g., Sulfurimonas gotlandica) use nitrate (NO3−) as an elec...

The symbiont Ca. Nanohaloarchaeum antarcticus is obligately dependent on its host Halorubrum lacusprofundi for lipids and other metabolites due to its lack of certain biosynthetic genes. However, it remains unclear which specific lipids or metabolites are acquired from its host, and how the host responds to infection. Here, we explored the lipidome...

Understanding how microbial lipidomes adapt to environmental and nutrient stress is crucial for comprehending microbial survival and functionality. Certain anaerobic bacteria can synthesize glycerolipids with ether/ester bonds, yet the complexities of their lipidome remodeling under varying physicochemical and nutritional conditions remain largely...

Microbial lipids, used as taxonomic markers and physiological indicators, have mainly been studied through cultivation. However, this approach is limited due to the scarcity of cultures of environmental microbes, thereby restricting insights into the diversity of lipids and their ecological roles. Addressing this limitation, here we apply metalipid...

Elucidation of the membrane lipid composition of bacteria can help to better understand how bacterial cells interact with their surroundings, adapt to environmental stress, and resist antimicrobial agents. Here we describe for the first time the detection of a wide array of N-glyceroyl alkylamine phosphoglycolipids (NGAPs) in a range of Bacillota b...

The sedimentary lipid pool is comprised of a myriad of individual components. Due to their importance for organic carbon sequestration and their application in paleoclimatic and geobiological reconstructions, its composition has been studied for many decades with targeted approaches but an overall view on its composition is still lacking. In part t...

microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmenta...

Microbial lipids, used as taxonomic markers and physiological indicators, have mainly been studied through cultivation. However, this approach is limited due to the scarcity of cultures of environmental microbes, thereby restricting insights into the diversity of lipids and their ecological roles. Addressing this limitation, here we apply for the f...

The symbiont Ca. Nanohaloarchaeum antarcticus is obligately dependent on its host Halorubrum lacusprofundi for lipids and other metabolites due to its lack of certain biosynthetic genes. However, it remains unclear which specific lipids or metabolites are acquired from its host, and how the host responds to infection. Here, we explored the lipidome...

Black carbon (BC) plays a crucial role in global carbon cycle and climate change. However, its source and burial flux in environments are not well constrained. Here, we investigated surface sediments from 22 Chinese lakes across wide geographical areas and different socioeconomic status. The BC content accounts for 0.09–10.5 % of total organic carb...

MicrobeMASST, a taxonomically-informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmenta...

MicrobeMASST, a taxonomically-informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmenta...

Lipids, as one of the main building blocks of cells, can provide valuable information on microorganisms in the environment. Traditionally, gas or liquid chromatography coupled to mass spectrometry (MS) has been used to analyze environmental lipids. The resulting spectra were then processed through individual peak identification and comparison with...

Membrane lipids and their related acyl and/or alkyl moieties are important biomarkers of the microbial community in environmental samples. Intact polar lipids, which are described by their lipid head groups and fatty acid tails, are major membrane components of living cells only and may therefore provide information about the living soil microbial...

Groundwater ecosystems host diverse and complex microbial communities that play important roles in the biogeochemical processing of organic matter and in the maintenance of drinking water quality. Here we investigated the microbial community in suspended particulate matter (SPM) of biogeochemically distinct groundwaters (Hainich Critical Zone Explo...

A variety of biomarkers were examined from Ocean Drilling Program Core 1202B to reconstruct temperature and phytoplankton community structures in the southern Okinawa Trough since 20 ka. Two molecular temperature proxies ( $${\rm U}_{{37}}^{{{\rm K}\prime}} $$ and TEX 86 ) show 5°C to ~6°C warming during the glacial-interglacial transition. Prior t...

Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are bacterial membrane lipids that are widely used as valuable paleoenvironmental proxies. The recently discovered 6-methyl brGDGTs improved the accuracy of the proxies for temperature “methylation branched tetraethers (MBT)” and soil pH “cyclization branched tetraethers (CBT)”. However, the...

Recently, 6-methyl branched glycerol dialkyl glycerol tetraethers (brGDGTs) were separated from 5-methyl brGDGTs, which are used in brGDGT-based proxies. Here we analyzed brGDGTs in 27 soil samples along the 400 mm isoline of mean annual precipitation in China by using tandem 2D liquid chromatography. The fractional abundance of 6-methyl brGDGTs sh...

Recently, 6-methyl branched glycerol dialkyl glycerol tetraethers (brGDGTs) were separated from 5-methyl brGDGTs, which are used in brGDGT-based proxies. Here we analyzed brGDGTs in 27 soil samples along the 400 mm isoline of mean annual precipitation in China by using tandem 2D liquid chromatography. The fractional abundance of 6-methyl brGDGTs sh...

The methylation index of branched tetraethers (MBT) and cyclization ratio of branched tetraethers (CBT) based on the distribution of branched glycerol dialkyl glycerol tetraethers (brGDGT) are useful proxies for the reconstruction of mean annual air temperature (MAT) and soil pH. Recently, a series of 6-methyl brGDGTs were identified which were pre...

Perylene, a five-ring nuclear polycyclic aromatic hydrocarbon (PAH), has a different distribution pattern from anthropogenic PAHs. Its source, however, remains obscure, limiting its application as an environmental indicator. Here we examine perylene in the upper 85 meter sediments of the ODP Hole 1202B from the southern Okinawa Trough. Over the pas...

Polycyclic aromatic hydrocarbons (PAHs) were analyzed for surface sediments and a sediment core from the Yellow River-dominated margin. The concentration of 16 USEPA priority PAHs in surface sediments ranged from 5.6 to 175.4 ng g(-1) dry weight sediment (dws) with a mean of 49.1 ng g(-1) dws. From 1930 to 2011, the distribution of PAHs (37.2 to 21...

Table S1 presents the recoveries of mixed PAHs in the matrix spiked samples. The recovery was calculated based on three replicate injections on an Agilent GC-MS. Generally, the recoveries varied from 69.7% to 100.5%. Table S2 shows the concentrations of 16 PAH (ng g−1 dws), diagnostic ratios and relative abundance of PAHs with different rings in su...