Steven S. Perakis

USGS Corvallis Oregon · Oregon State University College of Forestry

Symbiotic nitrogen (N)-fixing plants can enrich ecosystems with N, which can alter the cycling and demand for other nutrients. Researchers have hypothesized that fixed N could be used by plants and soil microbes to produce extracellular phosphatase enzymes, which release P from organic matter. Consistent with this speculation, the presence of N-fix...

Symbiotic nitrogen fixation (SNF) is a key ecological process whose impact depends on the strategy of SNF regulation – the degree to which rates of SNF change in response to limitation by N vs. other resources. SNF that is obligate or exhibits incomplete down‐regulation can result in excess N fixation, whereas a facultative SNF strategy does not. W...

Biological nitrogen fixation represents the largest natural flux of new nitrogen (N) into terrestrial ecosystems, providing a critical N source to support net primary productivity of both natural and agricultural systems. When they are common, symbiotic associations between plants and bacteria can add more than 100 kg N ha⁻¹ y⁻¹ to ecosystems. Yet,...

Sites in need of restoration typically have one or more environmental factors that limit seedling establishment. Identifying ecophysiological responses to environmental stressors can provide important insights into mitigating measures that would allow seedlings to overcome such constraints to survival. Koa (Acacia koa A. Gray) is a nitrogen-fixing...

We use the Multiple Element Limitation (MEL) model to examine responses of twelve ecosystems to elevated carbon dioxide (CO2), warming, and 20% decreases or increases in precipitation. Ecosystems respond synergistically to elevated CO2, warming, and decreased precipitation combined because higher water‐use efficiency with elevated CO2 and higher fe...

Outbreaks of defoliating insects in low‐diversity tropical forests occur infrequently but provide valuable insights about outbreak ecology in temperate environments and in general. We investigated an extensive outbreak of the endemic koa moth (Scotorythra paludicola), which defoliated endemic koa trees (Acacia koa) over a third of their range on Ha...

Climate change is leading to increased drought intensity and fire frequency, creating early-successional landscapes with novel disturbance–recovery dynamics. In the Klamath Mountains of northwestern California and southwestern Oregon, early-successional interactions between nitrogen (N)-fixing shrubs (Ceanothus spp.) and long-lived conifers (Dougla...

Forests are a significant CO2 sink. However, CO2 sequestration in forests is radiatively offset by emissions of nitrous oxide (N2O), a potent greenhouse gas, from forest soils. Reforestation, an important strategy for mitigating climate change, has focused on maximizing CO2 sequestration in plant biomass without integrating N2O emissions from soils...

How climate change may affect land-sea linkages along the Pacific Coast and the ecological consequences of these changes for marine food webs and ecosystem processes .

Accurately quantifying rates and patterns of biological nitrogen fixation (BNF) in terrestrial ecosystems is essential to characterize ecological and biogeochemical interactions, identify its mechanistic controls, improve BNF representation in conceptual and numerical modeling, and forecast nitrogen limitation constraints on future carbon (C) cycli...

Coastal margins are important areas of materials flux that link terrestrial and marine ecosystems. Consequently, climate-mediated changes to coastal terrestrial ecosystems and hydrologic regimes have high potential to influence nearshore ocean chemistry and food web dynamics. Research from tightly coupled, high-flux coastal ecosystems can advance u...

Symbiotic nitrogen- (N) fixing trees can influence multiple biogeochemical cycles by fixing atmospheric N, which drives net primary productivity and soil carbon (C) and N accumulation, as well as by mobilizing soil phosphorus (P) and other nutrients to support growth and metabolism. The soil micronutrient molybdenum (Mo) is essential to N-fixation,...

Premise: Determining which traits characterize strategies of coexisting species is important to developing trait-based models of plant communities. First, global dimensions may not exist locally. Second, the degree to which traits and trait spectra constitute independent dimensions of functional variation at various scales continues to be refined....

Quantifying human impacts on the N cycle and investigating natural ecosystem N cycling depend on the magnitude of inputs from natural biological nitrogen fixation (BNF). Here, we present two bottom-up approaches to quantify tree-based symbiotic BNF based on forest inventory data across the coterminous US plus SE Alaska. For all major N-fixing tree...

1.Fire activity is changing dramatically across the globe, with uncertain effects on ecosystem processes, especially belowground. Fire‐driven losses of soil carbon (C) are often assumed to occur primarily in the upper soil layers because the repeated combustion of aboveground biomass limits organic matter inputs into surface soil. However, C losses...

Pacific salmon acquire most of their biomass in the ocean before returning to spawn and die in coastal streams and lakes, thus providing subsidies of marine-derived nitrogen (MDN) to freshwater and terrestrial ecosystems. Recent declines in salmon abundance have raised questions of whether managers should mitigate for losses of salmon MDN subsidies...

Significance Tree species that form symbioses with nitrogen-fixing bacteria can naturally fertilize forests by converting atmospheric nitrogen gas into plant-available forms. However, other mineral nutrients that plants require for growth are largely locked in bedrock, and are released only slowly into soil. We used strontium isotopes to trace nutr...

[This corrects the article DOI: 10.1371/journal.pone.0205296.].

Atmospheric deposition of nitrogen (N) influences forest demographics and carbon (C) uptake through multiple mechanisms that vary among tree species. Prior studies have estimated the effects of atmospheric N deposition on temperate forests by leveraging forest inventory measurements across regional gradients in deposition. However, in the United St...

Species-level sample characteristics and summarized results. (XLSX)

Full survival equations. (PDF)

Full growth equations. (PDF)

Parameters for each species model. (XLSX)

Species relationships between atmospheric deposition and growth and survival. (PDF)

Forests cover 30% of the terrestrial Earth surface and are a major component of the global carbon (C) cycle. Humans have doubled the amount of global reactive nitrogen (N), increasing deposition of N onto forests worldwide. However, other global changes—especially climate change and elevated atmospheric carbon dioxide concentrations—are increasing...

Organic matter is of emerging interest as a control on molybdenum (Mo) biogeochemistry, and information on isotope fractionation during adsorption to organic matter can improve interpretations of Mo isotope variations in natural settings. Molybdenum isotope fractionation was investigated during adsorption onto insolubilized humic acid (IHA), a surr...

Multiple nutrient cycles regulate biological nitrogen (N) fixation in forests, yet long-term feedbacks between N-fixation and coupled element cycles remain largely unexplored. We examined soil nutrients and heterotrophic N-fixation across a gradient of 24 temperate conifer forests shaped by legacies of symbiotic N-fixing trees. We observed positive...

1.Trait-based models of ecological communities typically assume intraspecific variation in functional traits is not important, though such variation can change species trait rankings along gradients in resources and environmental conditions, and thus influence community structure and function. 2.We examined the degree of intraspecific relative to...

The connections between social and biophysical sciences are being forged in new ways as researchers and practitioners of natural resources seek to understand how lands can be managed for the benefit of human societies and the broader biotic community. Increasingly, we recognize that social and physical systems are tightly integrated, with human act...

We review the mechanisms of deleterious nitrogen (N) deposition impacts on temperate forests, with a particular focus on trees and lichens. Elevated anthropogenic N deposition to forests has varied effects on individual organisms depending on characteristics both of the N inputs (form, timing, amount) and of the organisms (ecology, physiology) invo...

Riparian forest soils can be highly dynamic, due to frequent fluvial disturbance, erosion, and sediment deposition, but effects of dams on riparian soils are poorly understood. We examined soils along toposequences within three river segments located upstream, between, and downstream of two dams on the Elwha River to evaluate relationships between...

Planning for forest sustainability has been a hallmark of US national resource management, beginning with the work of several visionaries of the previous century, including Gifford Pinchot and US presidents Grover Cleveland and Theodore Roosevelt. Their efforts created the US national forests in 1905 to address concerns about sustainable, long-term...

Background and aims Nutrient levels in decomposing detritus and soil can influence decomposition rates and detrital nutrient dynamics in differing ways among various detrital components of forests. We assessed whether increased phosphorus (P) levels in litter and soil influenced decomposition rates and litter nutrient dynamics of foliage, fine root...

Few high-elevation tropical catchments worldwide are gauged and even fewer are studied using combined hydrometric and isotopic data. Consequently, we lack information needed to understand processes governing rainfall-runoff dynamics and to predict their influence on downstream ecosystem functioning. To address this need, we present a combination of...

Nitrogen (N) is a key nutrient that shapes cycles of other essential elements in forests, including calcium (Ca). When N availability exceeds ecosystem demands, excess N can stimulate Ca leaching and deplete Ca from soils. Over the long term, these processes may alter the proportion of available Ca that is derived from atmospheric deposition vs. be...

Disturbances affect almost all terrestrial ecosystems, but it has been difficult to identify general principles regarding these influences. To improve our understanding of the long-term consequences of disturbance on terrestrial ecosystems, we present a conceptual framework that analyzes disturbances by their biogeochemical impacts. We posit that t...

Nitrogen-fixing lichens (cyanolichens) are an important source of nitrogen (N) in Pacific Northwest forests, but limitation of lichen growth by elements essential for N fixation is poorly understood. To investigate how nutrient limitation may affect cyanolichen growth rates, we fertilized a tripartite cyanobacterial lichen (Lobaria pulmonaria) and...

The trace element molybdenum (Mo) is essential to a suite of nitrogen (N) cycling processes in ecosystems, but there is limited information on its distribution within soils and relationship to plant and bedrock pools. We examined soil, bedrock, and plant Mo variation across 24 forests spanning wide soil pH gradients on both basaltic and sedimentary...

Human activity in the last century has increased nitrogen (N) deposition to a level that has caused or is likely to cause alterations to the structure and function of many ecosystems across the United States. We synthesized current research relating atmospheric N deposition to effects on terrestrial and freshwater ecosystems in the United States, a...

Forest disturbance and long-term succession towards old-growth are thought to increase nitrogen (N) availability and N loss, which should increase soil δ15N values. We examined soil and foliar patterns in N and δ15N, and soil N mineralization, across 800 years of forest succession in a topographically complex montane landscape influenced by human l...

Quantifying global patterns of terrestrial nitrogen (N) cycling is central to predicting future patterns of primary productivity, carbon sequestration, nutrient fluxes to aquatic systems, and climate forcing. With limited direct measures of soil N cycling at the global scale, syntheses of the 15 N5 14 N ratio of soil organic matter across climate g...

Studies of nutrient limitation in Douglas-fir forests of the Pacific Northwest focus predominantly on nitrogen, yet many stands demonstrate negligible or even negative growth response to nitrogen fertilization. To understand what nutrients other than nitrogen may limit forest productivity in this region, we tested six fertilizer treatments for thei...

Background/Question/Methods Biological nitrogen fixation supplies most of the nitrogen to many terrestrial ecosystems worldwide. Disturbance events often trigger increased rates of nitrogen fixation by fostering colonization and activity of symbiotic nitrogen-fixing plants. Each of these processes - disturbance and nitrogen fixation - can alter s...

The National Park Service and U.S. Forest Service manage areas in the states of Idaho, Oregon, and Washington – collectively referred to in this report as the Pacific Northwest - that contain significant natural resources and provide many recreational opportunities. The agencies are mandated to protect the air quality and air pollution-sensitive re...

Ongoing changes in disturbance regimes are predicted to cause acute changes in ecosystem structure and function in the coming decades, but many aspects of these predictions are uncertain. A key challenge is to improve the predictability of postdisturbance biogeochemical trajectories at the ecosystem level. Ecosystem ecologists and paleoecologists h...

Nutrient rich conditions often promote plant invasions, yet additions of non-nitrogen (N) nutrients may provide a novel approach for conserving native symbiotic N-fixing plants in otherwise N-limited ecosystems. Lupinus oreganus is a threatened N-fixing plant endemic to prairies in western Oregon and southwest Washington (USA). We tested the effect...

High nitrogen (N) accumulation in terrestrial ecosystems can shift patterns of nutrient limitation and deficiency beyond N toward other nutrients, most notably phosphorus (P) and base cations (calcium [Ca], magnesium [Mg], and potassium [K]). We examined how naturally high N accumulation from a legacy of symbiotic N fixation shaped P and base catio...

Background/Question/Methods Ecosystem nitrogen supply strongly influences the biogeochemical cycling and availability of other essential nutrients in temperate forests, especially calcium. Short-term additions of nitrogen often increase dissolved nitrate fluxes and decrease soil pH, which can stimulate soil calcium loss. However, the long-term eff...

Background/Question/Methods Cation tracers such as Ca and strontium (Sr) ratios and Ca-isotopes (44Ca/40Ca) are gaining interest as tools to identify sources and pathways of calcium (Ca) cycling in ecosystem studies. The mechanisms that influence these elemental and stable isotope ratios remain poorly resolved during cycling through ecosystem poo...

Litter nutrient dynamics contribute significantly to biogeochemical cycling in forest ecosystems. We examined how site environment and initial substrate quality influence decomposition and nitrogen (N) dynamics of multiple litter types. A 2.5-year decomposition study was installed in the Oregon Coast Range and West Cascades using (15)N-labeled litt...

Annual grass invasion into shrub-dominated ecosystems is associated with changes in nutrient cycling that may alter nitrogen (N) limitation and retention. Carbon (C) applications that reduce plant-available N have been suggested to give native perennial vegetation a competitive advantage over exotic annual grasses, but plant community and N retenti...

[1] Human activities are rapidly increasing the global supply of reactive N and substantially altering the structure and hydrologic connectivity of managed ecosystems. There is long-standing recognition that N must be removed along hydrologic flow paths from uplands to streams, yet it has proven difficult to assess the generality of this removal ac...

Biological nitrogen fixation (BNF) is a key ecological process that can restore nitrogen (N) lost in wildfire and shape the pace and pattern of post-fire forest recovery. To date, there is limited information on how climate and soil fertility interact to influence different pathways of BNF in early forest succession. We studied asymbiotic (forest f...

Riparian-zone vegetation can influence terrestrial and aquatic food webs through variation in the amount, timing, and nutritional content of leaf and other litter inputs. We investigated how riparian-forest community composition, understory density, and lateral slope shaped vertical and lateral litter inputs to 16 streams in the Oregon Coast Range....

Symbiotic N2-fixing tree species can accelerate ecosystem N dynamics through decomposition feedbacks via both direct and indirect pathways. Direct pathways include the production of readily decomposed leaf litter and increased N supply to decomposers, whereas indirect pathways include increased tissue N and altered detrital dynamics of non-fixing v...

Paleo Reconstructions of Biogeochemical Environments (PROBE) Workshop;Manhattan, Kansas; 19-21 April 2012 Disturbances—discrete events that reduce plant biomass—commonly regulate material and energy flow in terrestrial ecosystems. Recent studies document an increase in the size and/or severity of disturbances such as native bark beetle outbreaks an...

Background/Question/Methods Nutrient rich conditions often promote plant species invasion in ecosystems, which has fostered conservation approaches that seek to reduce nutrient availability as a way to favor native species. Consequently, nutrient additions are rarely used to promote plant species conservation, but additions of non-nitrogen nutrie...

Background/Question/Methods It is axiomatic in biogeochemistry that high tissue nitrogen (N) accelerates decomposition of high-quality leaf litter in the early phases of mass loss, but the influence of initial tissue N variation on the decomposition of lignin-rich litter is less resolved. Because environmental changes such as atmospheric N deposi...

Effects of anthropogenic nitrogen (N) deposition and the ability of terrestrial ecosystems to store carbon (C) depend in part on the amount of N retained in the system and its partitioning among plant and soil pools. We conducted a meta-analysis of studies at 48 sites across four continents that used enriched 15N isotope tracers in order to synthes...

High tissue nitrogen (N) accelerates decomposition of high-quality leaf litter in the early phases of mass loss, but the influence of initial tissue N variation on the decomposition of lignin-rich litter is less resolved. Because environmental changes such as atmospheric N deposition and elevated CO2 can alter tissue N levels within species more ra...

Human activity in the last century has led to a significant increase in nitrogen (N) emissions and atmospheric deposition. This N deposition has reached a level that has caused or is likely to cause alterations to the structure and function of many ecosystems across the United States. One approach for quantifying the deposition of pollution that wo...

Natural gradients of soil nitrogen (N) can be used to evaluate the consequences of long-term ecosystem N enrichment, and to test the applicability of N saturation theory as a general framework for understanding ecosystem N dynamics. Temperate forest soils of the Oregon Coast Range experience low rates of atmospheric N deposition, yet display among...