Shirin Abbasinejad Enger

Shirin Abbasinejad Enger
McGill University | McGill · Gerald Bronfman Department of Oncology, Medical Physics Unit

PhD

About

177
Publications
24,143
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1,475
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Introduction
Shirin Abbasinejad Enger currently works at the Gerald Bronfman Department of Oncology, McGill University. Shirin does research in Medical Physics.

Publications

Publications (177)
Article
Full-text available
Background Coronary artery disease is the most common form of cardiovascular disease. It is caused by excess plaque along the arterial wall, blocking blood flow to the heart (stenosis). A percutaneous coronary intervention widens the arterial wall with the inflation of a balloon inside the lesion area and leaves behind a metal stent to prevent re‐n...
Article
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Background Large reported variability in the material composition and geometrical components of the Xoft electronic high‐dose‐rate brachytherapy Causes inter‐source discrepancy in the source output. This variability is due to the manual manufacturing and assembly of the sources. Purpose This study aimed to develop a dosimetry software tool called...
Article
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Background and study aims Pancreatic cancer is a devastating disease with limited locoregional treatment options. Diffusing alpha-emitter radiation therapy (Alpha DaRT), a novel cancer treatment using alpha-particle interstitial radiotherapy, may help address this challenge. The aim of this study was to evaluate the feasibility and safety of endosc...
Article
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Objective. Relative biological effectiveness (RBE) differs between radiation qualities. However, an RBE of 1.0 has been established for photons regardless of the wide range of photon energies used clinically, the lack of reproducibility in radiobiological studies, and outdated reference energies used in the experimental literature. Moreover, due to...
Article
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Background Radiolabeling is critical in complex chemical reactions involving positron emission tomography (PET) radiotracer production. The process is now automated within a synthesis module to enhance efficiency and reduce radiation exposure. The key to this automation is the use of radiation detectors to monitor radioactivity transfer and ensure...
Article
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Objective. Treatment plan optimization in high dose rate brachytherapy often requires manual fine-tuning of penalty weights for each objective, which can be time-consuming and dependent on the planner's experience. To automate this process, this study used a multi-criteria approach called multi-objective Bayesian optimization with q-noisy expected...
Article
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Background In radiotherapy, it is essential to deliver prescribed doses to tumors while minimizing damage to surrounding healthy tissue. Accurate measurements of absorbed dose are required for this purpose. Gafchromic® external beam therapy (EBT) radiochromic films have been widely used in radiotherapy. While the dosimetric characteristics of the E...
Preprint
Background and purpose: Deep Learning (DL) has been widely explored for Organs at Risk (OARs) segmentation; however, most studies have focused on a single modality, either CT or MRI, not both simultaneously. This study presents a high-performing DL pipeline for segmentation of 30 OARs from MRI and CT scans of Head and Neck (H&N) cancer patients. Ma...
Article
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Background Yttrium‐90 () represents the primary radioisotope used in radioembolization procedures, while holmium‐166 () is hypothesized to serve as a viable substitute for due to its comparable therapeutic potential and improved quantitative imaging. Voxel‐based dosimetry for these radioisotopes relies on activity images obtained through PET or SPE...
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Objective. Monte Carlo (MC) simulations are the benchmark for accurate radiotherapy dose calculations, notably in patient-specific high dose rate brachytherapy (HDR BT), in cases where considering tissue heterogeneities is critical. However, the lengthy computational time limits the practical application of MC simulations. Prior research used deep...
Article
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High-finesse microcavities offer a platform for compact, high-precision sensing by employing high-reflectivity, low-loss mirrors to create effective optical path lengths that are orders of magnitude larger than the device geometry. Here, we investigate the radiation hardness of Fabry-Pérot microcavities formed from dielectric mirrors deposited on t...
Article
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Objective : In brachytherapy, deep learning (DL) algorithms have shown the capability of predicting 3D dose volumes. The reliability and accuracy of such methodologies remain under scrutiny for prospective clinical applications. This study aims to establish fast DL-based predictive dose algorithms for LDR (low-dose rate) prostate brachytherapy and...
Article
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Background The AAPM TG‐43U1 formalism remains the clinical standard for dosimetry of low‐ and high‐energy γ$\gamma$‐emitting brachytherapy sources. TG‐43U1 and related reports provide consensus datasets of TG‐43 parameters derived from various published measured data and Monte Carlo simulations. These data are used to perform standardized and fast...
Article
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The purpose of this study was to investigate the dosimetric characteristics of the GAFCHROMIC® EBT3 film responding to alpha particle irradiation. Unlaminated GAFCHROMIC® EBT3 film pieces, were irradiated with a 30.055 kBq ²⁴¹ Am alpha source, at eight different dose levels, between 0 and 509 Gy. The irradiations were performed inside an enclosed b...
Article
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Background Reduced expression or impaired signalling of tropomyosin receptor kinases (Trk receptors) are found in a vast spectrum of CNS disorders. [¹⁸F]TRACK is the first PET radioligand for TrkB/C with proven in vivo brain penetration and on-target specific signal. Here we report dosimetry data for [¹⁸F]TRACK in healthy humans. 6 healthy particip...
Article
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Radioembolization using Yttrium‐90 ( ⁹⁰ Y) microspheres is widely used to treat primary and metastatic liver tumors. The present work provides minimum practice guidelines for establishing and supporting such a program. Medical physicists play a key role in patient and staff safety during these procedures. Products currently available are identified...
Article
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Geant4 is a versatile Monte Carlo radiation transport simulation toolkit with a steep learning curve. This work introduces a user-code called M-TAG (Modular Radiation Teaching-Aid for Geant4), built on top of Geant4. M-TAG is designed to help gradually introduce the Geant4 toolkit to new users. The goal of Geant4 is to record quantities from the si...
Article
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Background Hydrated electrons, which are short‐lived products of radiolysis in water, increase the optical absorption of water, providing a pathway toward near‐tissue‐equivalent clinical radiation dosimeters. This has been demonstrated in high‐dose‐per‐pulse radiochemistry research, but, owing to the weak absorption signal, its application in exist...
Article
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Objective: GEANT4-DNA can simulate radiation chemical yield (G-value) for radiolytic species such as the hydrated electron (e aq ⁻ ) with the Independent Reaction Times (IRT) method, however, only at room temperature and neutral pH. This work aims to modify the GEANT4-DNA source code to enable the calculation of G-values for radiolytic species at d...
Article
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Purpose Dynamic Positron Emission Tomography (dPET) requires acquisition of the arterial input function (AIF), conventionally obtained via invasive arterial blood sampling. To obtain the AIF non-invasively, our group developed and combined two novel solutions consisting of 1) a detector, placed on a patient’s wrist during the PET scans to measure t...
Article
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Objective. The Monte Carlo (MC) method provides a complete solution to the tissue heterogeneity effects in low-energy low-dose rate (LDR) brachytherapy. However, long computation times limit the clinical implementation of MC-based treatment planning solutions. This work aims to apply deep learning (DL) methods, specifically a model trained with MC...
Article
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Purpose To provide the first clinical test case for commissioning of ¹⁹²Ir brachytherapy model‐based dose calculation algorithms (MBDCAs) according to the AAPM TG‐186 report workflow. Acquisition and Validation Methods A computational patient phantom model was generated from a clinical multi‐catheter ¹⁹²Ir HDR breast brachytherapy case. Regions of...
Article
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Objective: Intensity modulated high dose rate brachytherapy (IMBT) is a rapidly developing application of brachytherapy where anisotropic dose distributions can be produced at each source dwell position. This technique is made possible by placing rotating metallic shields inside brachytherapy needles or catheters. By dynamically directing the radi...
Article
Full-text available
In e-aq dosimetry, absorbed radiation dose to water is measured by monitoring the concentration of radiation-induced hydrated electrons (e-aq). However, to obtain accurate dose, the radiation chemical yield of e-aq, G(e-aq), is needed for the radiation quality/setup under investigation. The aim of this study was to investigate the time-evolution of...
Article
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Background Intensity‐modulated brachytherapy (IMBT) is an emerging technology for cancer treatment, in which radiation sources are shielded to shape the dose distribution. The rotatable shields provide an additional degree of freedom, but also introduce an additional, directional, type of uncertainty, compared to conventional high‐dose‐rate brachyt...
Article
Full-text available
Background Dynamic positron emission tomography (dPET) is a nuclear medicine imaging technique providing functional images for organs of interest with applications in oncology, cardiology, and drug discovery. This technique requires the acquisition of the time‐course arterial plasma activity concentration, called the arterial input function (AIF),...
Article
Purpose Intensity-modulated brachytherapy (IMBT) is a developing application of brachytherapy where high-density metallic shields located inside the catheters are used to modulate radiations allowing the production of anisotropic dose distributions at each source dwell position. By rotating the shields during the treatment, the radiation is directe...
Article
Full-text available
(1) Background: The introduction of total mesorectal excision (TME) for rectal cancer has led to improvement in local recurrence (LR) outcomes. Furthermore, the addition of preoperative external beam radiotherapy to TME reduces LR to less than 6%. As a trade-off to these gradual improvements in local therapies, the oncology community’s work is now...
Conference Paper
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Purpose: To build a machine-learning (ML) classifier to predict the clinical endpoint of post-Radiation-Therapy (RT) recurrence of gynecological cancer patients, while exploring the outcome predictability of cell spacing and nuclei size pre-treatment histopathology image features and clinical variables. Materials and Methods: Thirty-six gynecolog...
Article
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Purpose/Objective: The McMedHacks workshop and presentation series was created to teach individuals from various backgrounds about deep learning (DL) for medical image analysis in May, 2021. Material/Methods: McMedHacks is a free and student-led 8-week summer program. Registration for the event was open to everyone, including a form to survey pa...
Article
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PURPOSE To automate the segmentation of treatment applicators on computed tomography (CT) images for high-dose-rate (HDR) brachytherapy prostate patients implanted with titanium needles with the goals of improving plan quality and reducing the patient's time under anesthesia. METHODS The investigation was performed using 57 retrospective, intersti...
Article
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Background Rectal cancer is curable by standard surgery with Total Mesorectal Excision (TME). However, there are well known associated long-term bowel and sexual dysfunctions. Non-operative management (NOM) is an emerging treatment for patients with operable rectal cancer. There is evidence supporting dose response for tumor control in rectal adeno...
Article
Full-text available
Background Tumor delineation in endoscopy images is a crucial part of clinical diagnoses and treatment planning for rectal cancer patients. However, it is challenging to detect and adequately determine the size of tumors in these images, especially for inexperienced clinicians. This motivates the need for a standardized, automated segmentation meth...
Article
Full-text available
We present a simple, continuous, cavity-enhanced optical absorption measurement technique based on high-bandwidth Pound-Drever-Hall (PDH) sideband locking. The technique provides a resonant amplitude quadrature readout that can be mapped onto the cavity’s internal loss rate and is naturally compatible with weak probe beams. With a proof-of-concept...
Article
Full-text available
This work presents Monte Carlo (MC) study of a novel non-invasive positron detector, hereinafter called NID, designed to measure the arterial input function (AIF) through the wrist of a patient for use with dynamic positron emission tomography (PET). The goal of the study was to optimize a previously developed NID prototype, to determine its effici...
Article
Full-text available
Background Multiple post-treatment dosimetry methods are currently under investigation for Yttrium-90 ( $$^{90}\hbox {Y}$$ 90 Y ) radioembolization. Within each methodology, a variety of dosimetric inputs exists that affect the final dose estimates. Understanding their effects is essential to facilitating proper dose analysis and crucial in the eve...
Preprint
We present a simple, continuous, cavity-enhanced optical absorption measurement technique based on high-bandwidth Pound-Drever-Hall (PDH) sideband locking. The technique provides a resonant amplitude quadrature readout that can be mapped onto the cavity's internal loss rate, and is naturally compatible with weak probe beams. With a proof-of-concept...
Article
Full-text available
Microscopic energy deposition distributions from ionizing radiation are used to predict the biological effects of an irradiation and vary depending on biological target size. Ionizing radiation is thought to kill cells or inhibit cell cycling mainly by damaging DNA in the cell nucleus. The size of cells and nuclei depends on tissue type, cell cycle...