About
197
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Introduction
Current institution
Current position
- Supervisory Research AST Earth Science Remote Sensing
Additional affiliations
October 2021 - September 2023
October 2019 - September 2021
October 2016 - September 2019
Education
July 2010
Mountain Research Station
Field of study
- Summer Flux and Advanced Modeling Course
Publications
Publications (197)
A major goal of remote sensing is the development of generalizable algorithms to repeatedly and accurately map ecosystem properties across space and time. Imaging spectroscopy has great potential to map vegetation traits that cannot be retrieved from broadband spectral data, but rarely have such methods been tested across broad regions. Here we ill...
[1] Terrestrial biosphere models are designed to synthesize our current understanding of how ecosystems function, test competing hypotheses of ecosystem function against observations, and predict responses to novel conditions such as those expected under climate change. Reducing uncertainties in such models can improve both basic scientific underst...
The efficient inversion of complex, three-dimensional (3-D) radiative transfer models (RTMs), such as the discrete anisotropy radiative transfer (DART) model, can be achieved using a look-up table (LUT) approach. A pressing research priority in LUT-based inversion for a 3-D model is to determine the optimal LUT grid size and density. We present a s...
Accurate inventories of terrestrial carbon pools and fluxes are crucial for understanding ecosystem processes, tracking climate change impacts, and meeting the monitoring, reporting, and verification (MRV) requirements in international treaties and voluntary carbon markets. In meeting this need, the fusion of process-based modeling, field data, and...
Improving our ability to understand and predict the dynamics of the terrestrial carbon cycle remains a pressing challenge despite a rapidly growing volume and diversity of Earth Observation data. State data assimilation represents a path forward via an iterative cycle of making process-based forecasts and then statistically reconciling these foreca...
Predicting tropical tree demography is a key challenge in understanding the future dynamics of tropical forests. Although demographic processes are known to be regulated by leaf trait diversity, only the effect of inter‐specific trait variation has been evaluated, and it remains unclear as to what degree the intra‐specific trait plasticity across l...
Accurate assessment of leaf functional traits is crucial for a diverse range of applications from crop phenotyping to parameterizing global climate models. Leaf reflectance spectroscopy offers a promising avenue to advance ecological and agricultural research by complementing traditional, time-consuming gas exchange measurements. However, the devel...
Allocation of leaf phosphorus (P) among different functional fractions represents a crucial adaptive strategy for optimizing P use. However, it remains challenging to monitor the variability in leaf P fractions and, ultimately, to understand P‐use strategies across diverse plant communities.
We explored relationships between five leaf P fractions (...
Lianas, woody vines acting as structural parasites of trees, have profound effects on the composition and structure of tropical forests, impacting tree growth, mortality, and forest succession. Remote sensing could offer a powerful tool for quantifying the scale of liana infestation, provided the availability of robust detection methods. We analyze...
Since 2015, NASA’s Arctic Boreal Vulnerability Experiment (ABoVE) has investigated how climate change impacts the vulnerability and/or resilience of the permafrost-affected ecosystems of Alaska and northwestern Canada. ABoVE conducted extensive surveys with the Next Generation Airborne Visible/Infrared Imaging Spectrometer (AVIRIS-NG) during 2017,...
Tundra ecosystems in the Arctic store up to 40% of global below-ground organic carbon but are exposed to the fastest climate warming on Earth. However, accurately monitoring landscape changes in the Arctic is challenging due to the complex interactions among permafrost, micro-topography, climate, vegetation, and disturbance. This complexity results...
The Arctic is warming at over twice the rate of the rest of the Earth, resulting in significant changes in vegetation seasonality that regulates annual carbon, water, and energy fluxes. However, a crucial knowledge gap exists regarding the intricate interplay among climate, permafrost, and vegetation that generates high phenology variability across...
Background and Aims
Tropical forests exchange more carbon dioxide (CO2) with the atmosphere than any other terrestrial biome. Yet, uncertainty in the projected carbon balance over the next century is roughly three-times greater for the tropics than other ecosystems. Our limited knowledge of tropical plant physiological responses, including photosyn...
Navigating uncertainty is a critical challenge in all fields of science, especially when translating knowledge into real-world policies or management decisions. However, the wide variance in concepts and definitions of uncertainty across scientific fields hinders effective communication. As a microcosm of diverse fields within Earth Science, NASA’s...
Leaf dark respiration (Rdark), an important yet rarely quantified component of carbon cycling in forest ecosystems, is often simulated from leaf traits such as the maximum carboxylation capacity (Vcmax), leaf mass per area (LMA), nitrogen (N) and phosphorus (P) concentrations, in terrestrial biosphere models. However, the validity of these relation...
The study investigated the impact of specimen desiccation on spectral signatures of plant tissue and its influence on models predicting biochemical and physiological traits, as well as ecosystem function.
Analyzing 56 species, this study quantified the impact of leaf desiccation on: (1) the degree of change in the reflectance intensity, and its fir...
Time‐lapse cameras have been widely used as a tool to monitor the timing of seasonal vegetation growth. These simple, relatively inexpensive systems can provide high‐frequency observations of leaf development and demography which are critical data sets needed to characterize plant phenology from species to landscapes. This is important for understa...
architecture explains species moisture dependency but not mortality rates across a tropical rainfall gradient. Biotropica, 53: 1213-1225. https:// doi. org/ 10. 1111/ btp. 12964 In the original published article, one of the variables related to sapwood water storage capacity was mislabeled. To assess water storage capacity, we constructed water rel...
This study aimed to understand how transpiration (J s) and crown conductance (G s) of tropical trees are impacted by environmental and physiological traits across a gradient from seasonally dry, intermediate, and ever-wet tropical forests (Fig. 1), and to quantify how leaf-to-air temperature decoupling impacts G s.
Main hypotheses:
H1: High vapor...
The advent of new spaceborne imaging spectrometers offers new opportunities for ecologists to map vegetation traits at global scales. However, to date most imaging spectroscopy studies exploiting satellite spectrometers have been constrained to the landscape scale. In this paper we present a new method to map vegetation traits at the landscape scal...
Rapid warming due to human-caused climate change is reshaping the Arctic, enhanced by physical processes that cause the Arctic to warm more quickly than the global average, collectively called Arctic amplification. Observations over the past 40+ years show a transition to a wetter Arctic, with seasonal shifts and widespread disturbances influencing...
Climate change is having significant impacts on Earth’s ecosystems and carbon budgets, and in the Arctic may drive a shift from an historic carbon sink to a source. Large uncertainties in terrestrial biosphere models (TBMs) used to forecast Arctic changes demonstrate the challenges of determining the timing and extent of this possible switch. This...
Accurate understanding of the variability in foliar physiological traits across landscapes is critical to improve parameterization and evaluation of terrestrial biosphere models (TBMs) that seek to represent the response of terrestrial ecosystems to a changing climate. Numerous studies suggest imaging spectroscopy can characterize foliar biochemica...
Vegetative transpiration (E) and photosynthetic carbon assimilation (A) are known to be seasonally dynamic, with changes in their ratio determining the marginal water use efficiency (WUE). Despite an understanding that stomata play a mechanistic role in regulating WUE, it is still unclear how stomatal and nonstomatal processes influence change in W...
Plant identification is crucial to the conservation and management of natural areas. The shortwave spectral reflectance of leaves is a promising tool for rapidly identifying species at different taxonomic ranks. However, the spectral reflectance of leaves changes in response to biotic and abiotic conditions. This investigation asked how this variab...
Terrestrial biosphere models (TBMs) include the representation of vertical gradients in leaf traits associated with modeling photosynthesis, respiration, and stomatal conductance. However, model assumptions associated with these gradients have not been tested in complex tropical forest canopies.
We compared TBM representation of the vertical gradie...
The retrieval algorithms used for optical remote sensing satellite data to estimate Earth's geophysical properties have specific requirements for spatial resolution, temporal revisit, spectral range and resolution, and instrument signal‐to‐noise ratio (SNR) performance to meet biogeoscience objectives. Studies to estimate surface properties from hy...
Wildfires are a global crisis, but current fire models fail to capture vegetation response to changing climate. With drought and elevated temperature increasing the importance of vegetation dynamics to fire behavior, and the advent of next generation models capable of capturing increasingly complex physical processes, we provide a renewed focus on...
Spectroscopic reflectance data provide novel information on the properties of the Earth's terrestrial and aquatic surfaces. Until recently, imaging spectroscopy missions were dependent mainly on airborne instruments, such as the Next Generation Airborne Visible InfraRed Imaging Spectrometer (AVIRIS‐NG), providing limited spatial and temporal observ...
Observations of planet Earth from space are a critical resource for science and society. Satellite measurements represent very large investments and United States (US) agencies organize their effort to maximize the return on that investment. The US National Research Council conducts a survey of Earth science and applications to prioritize observati...
The representation of stomatal regulation of transpiration and CO2 assimilation is key to forecasting terrestrial ecosystem responses to global change. Given its importance in determining the relationship between forest productivity and climate, accurate and mechanistic model representation of the relationship between stomatal conductance (gs) and...
Within vascular plants, the partitioning of hydraulic resistance along the soil‐to‐leaf continuum affects transpiration and its response to environmental conditions. In trees, the fractional contribution of leaf hydraulic resistance (Rleaf) to total soil‐to‐leaf hydraulic resistance (Rtotal), or fRleaf (=Rleaf/Rtotal), is thought to be large, but t...
Widespread changes in vegetation cover and composition are driving strong impacts on Arctic ecosystem functioning and global climate feedbacks. An accurate characterization of tundra vegetation composition is required to understand how the Arctic will respond to future climate change. However, quantifying tundra vegetation composition over large ar...
The circumpolar average peak tundra greenness value in 2022 declined from the record high values of the previous two years, but still represented the fourth highest value since 2000.
Tundra greenness in 2022 was high in most of the North American Arctic, but unusually low in northeastern Siberia, consistent with persistent summer sea-ice in the adj...
The Arctic is warming at a faster rate than any other biome on Earth, resulting in widespread changes in vegetation composition, structure and function that have important feedbacks to the global climate system. The heterogeneous nature of arctic landscapes creates challenges for monitoring and improving understanding of these ecosystems, as curren...
Stomata play a central role in regulating the exchange of carbon dioxide and water vapor between ecosystems and the atmosphere. Their function is represented in land surface models (LSMs) by conductance models. The Functionally Assembled Terrestrial Ecosystem Simulator (FATES) is a dynamic vegetation demography model that can simulate both detailed...
Underlying policy efforts to address global climate change is the scientific need to develop the methods to accurately measure and model carbon stocks and fluxes across the wide range of spatial and temporal scales in the Earth system. Initiated in 2010, the NASA Carbon Monitoring System is one of the most ambitious relevant science initiatives to...
Aim
Rapid global change is impacting the diversity of tree species and essential ecosystem functions and services of forests. It is therefore critical to understand and predict how the diversity of tree species is spatially distributed within and among forest biomes. Satellite remote sensing platforms have been used for decades to map forest struct...
Photosynthesis is a key target to improve crop production in many species including soybean [Glycine max (L.) Merr.]. A challenge is that phenotyping photosynthetic traits by traditional approaches is slow and destructive. There is proof-of-concept for leaf hyperspectral reflectance as a rapid method to model photosynthetic traits. However, the cru...
The ability to monitor, understand, and predict the dynamics of the terrestrial carbon cycle requires the capacity to robustly and coherently synthesize multiple streams of information that each provide partial information about different pools and fluxes. In this study, we introduce a new terrestrial carbon cycle data assimilation system, built on...
Stomatal conductance schemes that optimize with respect to photosynthetic and hydraulic functions have been proposed to address biases in land‐surface model (LSM) simulations during drought. However, systematic evaluations of both optimality‐based and alternative empirical formulations for coupling carbon and water fluxes are lacking. Here, we embe...
Stomata play a central role in surface–atmosphere exchange by controlling the flux of water and CO2 between the leaf and the atmosphere. Representation of stomatal conductance (gsw) is therefore an essential component of models that seek to simulate water and CO2 exchange in plants and ecosystems. For given environmental conditions at the leaf surf...
Observing the environment in the vast regions of Earth through remote sensing platforms provides the tools to measure ecological dynamics. The Arctic tundra biome, one of the largest inaccessible terrestrial biomes on Earth, requires remote sensing across multiple spatial and temporal scales, from towers to satellites, particularly those equipped f...
Many terrestrial biosphere models depend on an understanding of the relationship between stomatal conductance and photosynthesis. However, unlike the measurement of photosynthetic parameters, such as the maximum carboxylation capacity, where standard methods (e.g., CO2 response or ACi curves) are widely accepted, a consensus method for empirically...
Stomata play a central role in regulating the exchange of carbon and water vapor between ecosystems and 10 the atmosphere. Their function is represented by land surface models (LSMs) by conductance models. The Functionally Assembled Terrestrial Ecosystem Simulator (FATES) is a dynamic vegetation demography model that can simulate both detailed plan...
Tropical leaf phenology—particularly its variability at the tree-crown scale—dominates the seasonality of carbon and water fluxes. However, given enormous species diversity, accurate means of monitoring leaf phenology in tropical forests is still lacking. Time series of the Green Chromatic Coordinate (GCC) metric derived from tower-based red–greenb...
https://arctic.noaa.gov/Report-Card/Report-Card-2021/ArtMID/8022/ArticleID/936/Tundra-Greenness
As the Arctic region moves into uncharted territory under a warming climate, it is important to refine the terrestrial biosphere models (TBMs) that help us understand and predict change. One fundamental uncertainty in TBMs relates to model parameters, configuration variables internal to the model whose value can be estimated from data. We incorpora...
The Arctic–Boreal Region (ABR) has a large impact on global vegetation–atmosphere interactions and is experiencing markedly greater warming than the rest of the planet, a trend that is projected to continue with anticipated future emissions of CO2. The ABR is a significant source of uncertainty in estimates of carbon uptake in terrestrial biosphere...
Observing the environment in the vast inaccessible regions of Earth through remote sensing platforms provides the tools to measure ecological dynamics. The Arctic tundra biome, one of the largest inaccessible terrestrial biomes on Earth, requires remote sensing across multiple spatial and temporal scales, from towers to satellites, particularly tho...
The ability to monitor, understand, and predict the dynamics of the terrestrial carbon cycle requires the capacity to robustly and coherently synthesize multiple streams of information that each provide partial information about different pools and fluxes. In this study, we introduce a new terrestrial carbon cycle data assimilation system, built on...
Tropical forests are one of the main carbon sinks on Earth, but the magnitude of CO2 absorbed by tropical vegetation remains uncertain. Terrestrial biosphere models (TBMs) are commonly used to estimate the CO2 absorbed by forests, but their performance is highly sensitive to the parameterization of processes that control leaf-level CO2 exchange. Di...
Measurement of carbon dioxide (CO2) and water vapor (H2O) exchanged by leaves has been tremendously important for advancing understanding of plant physiology. Typically, photosynthesis measurement systems estimate the concentration of CO2 and H2O in air that has passed over a leaf inside a leaf chamber. Together with additional information such as...
Biodiversity projections with uncertainty estimates under different climate, land-use, and policy scenarios are essential to setting and achieving international targets to mitigate biodiversity loss. Evaluating and improving biodiversity predictions to better inform policy decisions remains a central conservation goal and challenge. A comprehensive...
Lianas, woody vines acting as structural parasites of trees, have profound effects on the composition and structure of tropical forests, impacting tree growth, mortality, and forest succession. Remote sensing offers a powerful tool for quantifying the scale of liana infestation, provided the availability of robust detection methods. We analyze the...
The Surface Biology and Geology (SBG) investigation will create global maps of spectral surface reflectance and emissivity at a cadence of 16 days or better, with coverage to address global questions about Earth's geology, cryosphere and ecosystems. The revolutionary potential poses a commensurate challenge: creating contiguous maps free from regio...
The Arctic is experiencing some of the most rapid climate change on Earth, with strong impacts on tundra ecosystems that are characterized by high land-surface and vegetation heterogeneity. Previous studies have explored this complexity using satellite remote sensing, however these typically coarse spatial resolution data have generally missed sub-...
Leaf trait relationships are widely used to predict ecosystem function in terrestrial biosphere models (TBMs), in which leaf maximum carboxylation capacity (Vc,max), an important trait for modelling photosynthesis, can be inferred from other easier‐to‐measure traits. However, whether trait–Vc,max relationships are robust across different forest typ...
Partial least squares regression (PLSR) modelling is a statistical technique for correlating datasets, and involves the fitting of a linear regression between two matrices. One application of PLSR enables leaf traits to be estimated from hyperspectral optical reflectance data, facilitating rapid, high-throughput, non-destructive plant phenotyping....
Drought is the most important limitation on crop yield. Understanding and detecting drought stress in crops is vital for improving water use efficiency through effective breeding and management. Leaf reflectance spectroscopy offers a rapid, non-destructive alternative to traditional techniques for measuring plant traits involved in a drought respon...
Intensified droughts are affecting tropical forests across the globe. However, the underlying mechanisms of tree drought response and mortality are poorly understood. Hydraulic traits and especially hydraulic safety margins (HSMs), that is, the extent to which plants buffer themselves from thresholds of water stress, provide insights into species‐s...
Canopy radiative transfer is the primary mechanism by which models relate vegetation composition and state to the surface energy balance, which is important to light- and temperature-sensitive plant processes as well as understanding land–atmosphere feedbacks. In addition, certain parameters (e.g., specific leaf area, SLA) that have an outsized inf...
The finely tuned balance between sources and sinks determines plant resource partitioning and regulates growth and development. Understanding and measuring metabolic indicators of source or sink limitation forms a vital part of global efforts to increase crop yield for future food security. We measured metabolic profiles of Cucurbita pepo (zucchini...
Understanding seasonal variation in photosynthesis is important for understanding and modeling plant productivity. Here, we used shotgun sampling to examine physiological, structural and spectral leaf traits of upper canopy, sun-exposed leaves in Quercus coccinea Münchh (scarlet oak) across the growing season in order to understand seasonal trends,...
National Academies' Decadal Survey, Thriving on Our Changing Planet, recommended Surface Biology and Geology (SBG) as a "Designated Targeted Observable" (DO). The SBG DO is based on the need for capabilities to acquire global, high spatial resolution, visible to shortwave infrared (VSWIR; 380-2500 nm; ~30 m pixel resolution) hyperspectral (imaging...
Leaf-level gas exchange data support the mechanistic understanding of plant fluxes of carbon and water. These fluxes inform our understanding of ecosystem function, are an important constraint on parameterization of terrestrial biosphere models, are necessary to understand the response of plants to global environmental change, and are integral to e...
Triose phosphates are the principal product of photosynthesis. They are used within the chloroplast for starch synthesis, or translocated to the cytosol where they are used to fuel sucrose synthesis. Use of triose phosphate releases inorganic phosphate, and is under strict metabolic control that matches the supply of triose phosphate from the Calvi...
In an era of rapid global change, our ability to understand and predict Earth's natural systems is lagging behind our ability to monitor and measure changes in the biosphere. Bottlenecks to informing models with observations have reduced our capacity to fully exploit the growing volume and variety of available data. Here, we take a critical look at...
Plant functional diversity is strongly connected to photosynthetic carbon assimilation in terrestrial ecosystems. However, many of the plant functional traits that regulate photosynthetic capacity, including foliar nitrogen concentration and leaf mass per area, vary significantly between and within plant functional types and vertically through fore...
Mechanistic photosynthesis models are at the heart of terrestrial biosphere models (TBMs) simulating the daily, monthly, annual and decadal rhythms of carbon assimilation (A). These models are founded on robust mathematical hypotheses that describe how A responds to changes in light and atmospheric CO2 concentration. Two predominant photosynthesis...
Ecosystem models are often calibrated and/or validated against derived remote sensing data products, such as MODIS leaf area index. However, these data products are generally based on their own models, whose assumptions may not be compatible with those of the ecosystem model in question, and whose uncertainties are usually not well quantified. Here...
Protocol for predicting leaf traits from leaf reflectance spectra, using partial least-squares regression (PLSR).
Remote imaging spectroscopy's role in Earth science will grow in the coming decade as a series of globe-spanning spectroscopy missions launch from NASA, ESA, and other agencies. The nature of remote imaging spectroscopy will change, advancing from short regional studies to address global multi-year questions. The diversity of data will also grow wi...
Changes in vegetation distribution, structure, and function can modify the canopy properties of terrestrial ecosystems, with potential consequences for regional and global climate feedbacks. In the Arctic, climate is warming twice as fast as compared to the global average (known as ‘Arctic amplification’), likely having stronger impacts on arctic t...
In this chapter, we begin by exploring the relationship between plant functional traits and functional diversity and how this relates to the characterization and monitoring of global plant biodiversity. We then discuss the connection between leaf functional traits and their resulting optical properties (i.e., reflectance, transmittance, and absorpt...
Plant functional traits determine vegetation responses to environmental variation, but variation in trait values is large, even within a single site. Likewise, uncertainty in how these traits map to Earth system feedbacks is large. We use a vegetation demographic model (VDM), the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), to ex...
Photosynthesis is currently measured using time laborious and/or destructive methods which slows research and breeding efforts to identify crop germplasm with higher photosynthetic capacities. We present a plot level screening tool for quantification of photosynthetic parameters and pigment contents that utilizes hyperspectral reflectance from sunl...
In an era of rapid global change, our ability to understand and predict Earth's natural systems is lagging behind our ability to monitor and measure changes in the biosphere. Bottlenecks in our ability to process information have reduced our capacity to fully exploit the growing volume and variety of data. Here, we take a critical look at the infor...
We have develop a prototype land data assimilation system, by employing a formal Bayesian model-data fusion between bottom-up process-based ecosystem models and multiple data sources to estimate key C pools and fluxes. The system can aggregate a diverse suite of observations (CMS) into composite carbon cycle estimates that can directly inform MRV....
Accurate characterization of post-fire changes in tree mortality and carbon storage is critical in understanding and simulating future forest responses to wildfires in response to climate change. LiDAR remote sensing has been successfully used to estimate aboveground biomass (AGB) in undisturbed forests, but few studies focused on effects of burn s...
Stomata regulate CO2 uptake for photosynthesis and water loss through transpiration. The approaches used to represent stomatal conductance (gs) in models vary. In particular, current understanding of drivers of the variation in a key parameter in those models, the slope parameter (i.e. a measure of intrinsic plant water‐use‐efficiency), is still li...
Plant functional traits determine vegetation responses to environmental variation, but variation in trait values is large, even within a single site. Likewise, uncertainty in how these traits map to Earth system feedbacks is large. We use a vegetation demographic model (VDM), the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), to ex...
Vegetation plays an important role in regulating global carbon cycles and is a key component of the Earth system models (ESMs) that aim to project Earth's future climate. In the last decade, the vegetation component within ESMs has witnessed great progress from simple “big-leaf” approaches to demographically structured approaches, which have a bett...
Questions
Question (1)
Hi Folks
Several years ago I bought a TRAC from Mike (?) @ 3rd wave (?) to use for my dissertation research. Since starting my scientist position at BNL I have been trying to order another for my RS lab. However After more than a year of trying to find out how to get another I haven't heard back. Is it possible to still buy one of these devices, or get the specs to build one? I ask as it would be great to collect this data with HemiPhotos at our research sites.
Also, as for HemiPhoto gear, I used to use the DHP recommended Nikon camera but wonder if there is a suggestion for new hardware?
Thanks!
Shawn
