Seth M Bybee

Brigham Young University - Provo Main Campus | BYU · Department of Biology

This research-level text documents the latest advances in odonate biology and relates these to a broader ecological and evolutionary research agenda. Despite being one of the smallest insect orders, dragonflies offer a number of advantages for both laboratory and field studies. In fact, they continue to make a crucial contribution to the advancemen...

Citation: Kalkman, V.J.; Boudot, J.-P.; Futahashi, R.; Abbott, J.C.; Bota-Sierra, C.A.; Guralnick, R.; Bybee, S.M.; Ware, J.; Belitz, M.W. Diversity of Palaearctic Dragonflies and Damselflies (Odonata). Diversity 2022, 14, 966. https://doi. More than 1.2 million distribution records were used to create species distribution models for 402 Palaearcti...

Vanuatubasis Ober & Staniczek, 2009 is an endemic genus of damselfly found on the island archipelago of Vanuatu. Previously only three species were assigned to the genus. Here, all known species of Vanuatubasis are formally described and treated, including the association of females for known species. The following new congeners are also described:...

The damselflies Hetaerininae, a subfamily of Calopterygidae, comprise four genera distributed from North to South America: Hetaerina, Mnesarete, Ormenophlebia and Bryoplathanon. While several studies have focused on the intriguing behavioral and morphological modifications within Hetaerina, little of the evolutionary history of the group is well un...

We understand very little about the timing and origins of bioluminescence, particularly as a predator avoidance strategy. Understanding the timing of its origins, however, can help elucidate the evolution of this ecologically important signal. Using fireflies, a prevalent bioluminescent group where bioluminescence primarily functions as aposematic...

Rarely have studies assessed Odonata diversity for the entire Nearctic realm by including Canada, the United States, and Mexico. For the first time, we explored Odonata diversity in this region according to a definition of natural community assemblages and generated species distribution models (SDMs). Species occurrence data were assembled by revie...

Oxygen is an important and often limiting reagent of a firefly’s bioluminescent chemical reaction. Therefore, the development of the tracheal system and its subsequent modification to support the function of firefly light organs are key to understanding this process. We employ micro-CT scanning, 3D rendering, and confocal microscopy to assess the a...

Patterns in morphological variation are a central theme of evolution. Uncovering links between morphological character evolution and natural history, specifically feeding behaviour, is important to understanding biological diversity. Species within the sap beetles (Nitidulidae) exhibit a tremendous diversity of feeding behaviours. This immense dive...

Bioluminescence is found across life and has many functions. Yet we understand very little about its timing and origins, particularly as a predator avoidance strategy. Understanding the timing between bioluminescence and predator origins has yet to be examined and can help elucidate the evolution of the ecologically important signal aposematism. Us...

The tribe Plesioclytini was recently erected for a single genus of cerambycine longhorn beetle. The group was diagnosed from a proposed sister lineage, the diverse Clytini; however, a formal phylogenetic analysis was not performed due to limitations in data availability. Here, we present a phylogenetic reconstruction from five loci, that Plesioclyt...

For almost 30 years, there have been active discussions about the taxonomic impediment and the challenge this represents to address the current human-induced biodiversity crisis. From the start (Systematics Agenda 2000, 1994), the term ‘taxonomic impediment’ has been ambiguous, designating both the insufficiency and inadequacy of the resources put...

The coastal areas of Vanuatu are under a multitude of threats stemming from commercialization, human development, and climate change. Atyphella Olliff is a genus of firefly that includes species endemic to these coastal areas and will need protection. The research that has already been conducted was affected by accessibility due to the remote natur...

The genus Anax is a group of cosmopolitan dragonflies noted for its conspicuous migratory behaviours and large size. Here we present the first dated, species-level, multigene, molecular phylogeny for the group to test generic and species-limits, as well as the evolution of migration and range size. Using five mitochondrial and nuclear gene regions...

Introgression is an important biological process affecting at least 10% of the extant species in the animal kingdom. Introgression significantly impacts inference of phylogenetic species relationships where a strictly binary tree model cannot adequately explain reticulate net-like species relationships. Here we use phylogenomic approaches to unders...

Most organisms are dependent on sensory cues from their environment for survival and reproduction. Fireflies (Coleoptera: Lampyridae) represent an ideal system for studying sensory niche adaptation due to many species relying on bioluminescent communication; as well as a diversity of ecologies. Here; using transcriptomics; we examine the phototrans...

Flowers have evolved signals that exploit the sensory systems of insect visitors. In the case of visual cues, color signals are thought to have been shaped in large part by the spectral sensitivity of key pollinators, such as hymenopterans. Beetles were some of the first plant pollinators, pre-dating the angiosperm radiation but with the exception...

We describe the Cephalozygoptera, a new, extinct suborder of Odonata, composed of the families Dysagrionidae and Sieblosiidae, previously assigned to the Zygoptera, and possibly the Whetwhetaksidae n. fam. The Cephalozygoptera is close to the Zygoptera, but differs most notably by distinctive head morphology. It includes 59 to 64 species in at leas...

We describe the Cephalozygoptera, a new, extinct suborder of Odonata, composed of the families Dysagrionidae and Sieblosiidae, previously assigned to the Zygoptera, and possibly the Whetwhetaksidae n. fam. The Cephalozygoptera is close to the Zygoptera, but differs most notably by distinctive head morphology. It includes 59 to 64 species in at leas...

Opsins, combined with a chromophore, are the primary light-sensing molecules in animals and are crucial for color vision. Throughout animal evolution, duplications and losses of opsin proteins are common, but it is unclear what is driving these gains and losses. Light availability is implicated, and dim environments are often associated with low op...

Dragonflies and damselflies are a charismatic, medium-sized insect order (∼6300 species) with a unique potential to approach comparative research questions. Their taxonomy and many ecological traits for a large fraction of extant species are relatively well understood. However, until now, the lack of a large-scale phylogeny based on high throughput...

A major challenge in evolutionary biology concerns how genetic and phenotypic variation is created and maintained. In this study, we investigated the origin(s) and evolutionary patterns of the female-limited colour polymorphism in Ischnura. This involves the presence of one to three colour morphs: one androchrome morph with coloration that resemble...

The leg regeneration capabilities of damselflies are understudied. Here we present the first data of regenerated limbs across a genus of damselfly based on adult specimens collected in the field to illustrate the prevalence of limb loss among nymphs. We show that this phenomenon is much more prevalent than previously thought, as 42 percent of indiv...

Bioluminescence has been hypothesized as aposematic signalling, inter-sexual communication and a predatory strategy, but origins and relationships among bioluminescent beetles have been contentious. We reconstruct the phylogeny of the bioluminescent elateroid beetles (i.e. Elateridae, Lampyridae, Phengodidae and Rhagophthalmidae), analysing genomic...

Introgression is arguably one of the most important biological processes in the evolution of groups of related species, affecting at least 10% of the extant species in the animal kingdom. Introgression reduces genetic divergence between species, and in some cases can be highly beneficial, facilitating rapid adaptation to ever-changing environmental...

A checklist to the Nitidulidae of Vanuatu is provided based on a combination of historical museum specimens and recent field expeditions. A dichotomous key to the described species recorded from the country is provided. Specific data per island is given where available; in addition, broader distributions are outlined for each described taxon. Sever...

Fireflies (Coleoptera: Lampyridae) are a cosmopolitan group of ~ 2,500 beetle species with rampant misclassification (Martin et al. 2019). This is in part due to morphological variation within genera and between genders. The problem arises when authors base classification on these variable morphologies. Based on this (Martin et al. 2019) recent rec...

Additional work on the islands of Vanuatu has improved our understanding of the actual diversity of South Pacific coastal fireflies. Prior to recent fieldwork in Vanuatu, the only known lampyrid from Vanuatu was Atyphella aphrogeneia (Ballantyne), a coastal species also found in Papua New Guinea. After further examination, we determined that specim...

The genus Atyphella Olliff includes several coastal species with larvae that were collected on coastal rock within the intertidal zone. Recent fieldwork in Vanuatu has expanded the distribution of these insects and begun to provide insight into how they are able to survive in such a unique environment. An ecological niche model is produced using Ma...

Too many students reject the theory of evolution because they view it as incompatible with their religious beliefs. Some have argued that abandoning religious belief is the only way to help religious individuals accept evolution. Conversely, our data support that highlighting faith/evolution compatibility is an effective means to increase student a...

Fireflies (Lampyridae Rafinesque) are a diverse family of beetles which exhibit an array of morphologies including varying antennal and photic organ features. Due in part to their morphological diversity, the classification within the Lampyridae has long been in flux. Here we use an anchored hybrid enrichment approach to reconstruct the most extens...

Transcription factors are key regulatory elements that affect gene expression in response to specific signals, including environmental stresses such as salinity. Halophytes are specialized plants that have the ability to complete their life cycle in saline environments. In this study we have identified and characterized the evolutionary relationshi...

Despite the importance of tree-thinking and evolutionary trees to biology, no appropriately developed concept inventory exists to measure student understanding of these important concepts. To address this need, we developed a multiple-choice concept inventory consisting of 24 pairs of items, and we provide evidence to support its use among undergra...

Polling data reveal a decades-long residual rejection of evolution in the United States, based on perceived religious conflict. Similarly, a strong creationist movement has been documented internationally, including in the Muslim world. Members of the Church of Jesus Christ of Latter-day Saints (LDS, Mormon), a generally conservative denomination,...

Post-Essay prompt and rubric. This is the essay prompt given to students at the end of the semester to determine whether change occurred. Explanations of each category are given. (DOCX)

Pre-Essay prompt and rubric. This is the essay prompt given to students at the beginning of the semester. Also included is an example of the types of statements used to categorize essays. (DOCX)

Fireflies and their luminous courtships have inspired centuries of scientific study. Today firefly luciferase is widely used in biotechnology, but the evolutionary origin of bioluminescence within beetles remains unclear. To shed light on this long-standing question, we sequenced the genomes of two firefly species that diverged over 100 million-yea...

Background Acceptance of evolutionary theory varies widely and is often associated with religious background. Some have suggested there exists an additional relationship between scientific reasoning ability and the acceptance of evolutionary theory. In this study, we used structural equation modeling to test whether scientific reasoning ability pre...

Fireflies and their fascinating luminous courtships have inspired centuries of scientific study. Today firefly luciferase is widely used in biotechnology, but the evolutionary origin of their bioluminescence remains unclear. To shed light on this long-standing question, we sequenced the genomes of two firefly species that diverged over 100 million-...

New morphological techniques allow for the evaluation of novel character systems that are potentially important for phylogenetic analysis. Only a few studies so far have used character systems from the insect thorax for phylogenetics; the reasons for this might include a lack of common terminology or established homology for pterygote insect thorax...

We present kleuren, a novel assembly-free method to reconstruct phylogenetic trees using the Colored de Bruijn Graph. kleuren works by constructing the Colored de Bruijn Graph and then traversing it, finding bubble structures in the graph that provide phylogenetic signal. The bubbles are then aligned and concatenated to form a supermatrix, from whi...

Opsin proteins are fundamental components of animal vision whose structure largely determines the sensitivity of visual pigments to different wavelengths of light. Surprisingly little is known about opsin evolution in beetles, even though they are the most species rich animal group on Earth and exhibit considerable variation in visual system sensit...

Fireflies are some of the most captivating organisms on the planet. They have a rich history as subjects of scientific study, especially in relation to their bioluminescent behavior. Yet, the phylogenetic relationships of fireflies are still poorly understood. Here, we present the first total evidence approach to reconstruct lampyrid phylogeny usin...

Gene duplication plays a central role in adaptation to novel environments by providing new genetic material for functional divergence and evolution of biological complexity. Several evolutionary models have been proposed for gene duplication to explain how new gene copies are preserved by natural selection but these models have rarely been tested u...

Detecting homologous sequences in organisms is an essential step in protein structure and function prediction, gene annotation and phylogenetic tree construction. Heuristic methods are often employed for quality control of putative homology clusters. These heuristics, however, usually only apply to pairwise sequence comparison and do not examine cl...

Background: Arthropods have received much attention as a model for studying opsin evolution in invertebrates. Yet, relatively few studies have investigated the diversity of opsin proteins that underlie spectral sensitivity of the visual pigments within the diverse beetles (Insecta: Coleoptera). Previous work has demonstrated that beetles appear to...

Dermaptera is a relatively small order of free-living insects that typically feed on detritus and other plant material. However, two earwig lineages - Arixeniidae and Hemimeridae -- are epizoic on Cheiromeles bats and Beamys and Cricetomys rats respectively. Both of these epizoic families are comprised of viviparous species. The monophyly of these...

Background Accurate detection of homologous relationships of biological sequences (DNA or amino acid) amongst organisms is an important and often difficult task that is essential to various evolutionary studies, ranging from building phylogenies to predicting functional gene annotations. There are many existing heuristic tools, most commonly based...

Insects have developed incredible means to avoid detection by predators. At least five insect orders have species that resemble leaves. Katydids (Orthoptera:Tettigoniidae) are the most diverse and wide-ranging of the leaf-like insects. At least 14 of the 20 extant katydid subfamilies contain species with leaf-like wings. Although it is undisputed t...

Students frequently hold an incorrect view of evolution. There are several potential barriers that prevent religious students, specifically, from engaging evolutionary theory in the classroom. This study focuses on two hypothesized barriers on learning evolutionary theory in a highly religious model population, specifically members of The Church of...

Among insects, opsin copy number variation has been shown to be quite diverse. However, within the beetles, very little work on opsins has been conducted. Here, we look at the visual system of fireflies (Coleoptera: Lampyridae), which offer an elegant system in which to study visual evolution as it relates to their behavior and broader ecology. The...

The first three visual transcriptomes were sequenced for the Jewel Beetles (Coleoptera: Buprestidae), including both a male and female Emerald Ash Borer (EAB: Agrilus planipennis Fairmaire), arguably the most economically important insect pest in North America, and one male Chrysochroa tonkinensis (Descarpentries). Sequences for r-opsin genes were...

Background Tools for high throughput sequencing and de novo assembly make the analysis of transcriptomes (i.e. the suite of genes expressed in a tissue) feasible for almost any organism. Yet a challenge for biologists is that it can be difficult to assign identities to gene sequences, especially from non-model organisms. Phylogenetic analyses are o...

Using multiple lines of evidence to compare Western and Eastern populations of Pyractomena dispersa (Coleoptera: Lampyridae) Yelena M. Pacheco1, Gavin J. Martin1, Marc A. Branham2, Michael F. Whiting1, Seth M. Bybee1 1Department of Biology, Brigham Young University, Provo, UT, USA 2Department of Entomology and Nematology, University of Florid...