Sean Mayes

International Crops Research Institute for Semi Arid Tropics | ICRISAT

Sesame (Sesamum indicum L.) is an ancient oilseed crop belonging to the family Pedaliaceae and a globally cultivated crop for its use as oil and food. In this study, 2496 sesame accessions, being conserved at the National Genebank of ICAR‐National Bureau of Plant Genetic Resources (NBPGR), were genotyped using genomics‐assisted double‐digest restri...

A sustainable supply of plant protein is critical for future generations and needs to be achieved while reducing green house gas emissions from agriculture and increasing agricultural resilience in the face of climate volatility. Agricultural diversification with more nutrient-rich and stress tolerant crops could provide the solution. However, this...

Hamdi MFFA, Ilyas S, Qadir A, Mayes S. 2024. Morphological variability and cluster analysis of 16 bambara groundnut (Vigna subterranea) genotypes. Biodiversitas 25: 97-106. Identifying morphological and germination characters in bambara groundnut (Vigna subterranea (L.) Verdc.) is important to determine the advantages and disadvantages of several g...

Genetic research on insect natural enemies was, until relatively recently, rare and was essentially limited to parasitoid wasps and some coccinellid beetles.

Sequencing technologies have rapidly evolved over the past two decades, and new technologies are being continually developed and commercialized. The emerging sequencing technologies target generating more data with fewer inputs and at lower costs. This has also translated to an increase in the number and type of corresponding applications in genomi...

To reduce the genome sequence representation, restriction site-associated DNA sequencing (RAD-seq) protocols is being widely used either with single-digest or double-digest methods. In this study, we genotyped the sesame population (48 sample size) in a pilot scale to compare single and double-digest RAD-seq (sd and ddRAD-seq) methods. We analysed...

Abstract Background Assessment of segregating populations for their ability to withstand drought stress conditions is one of the best approaches to develop breeding lines and drought tolerant varieties. Bambara groundnut (Vigna subterranea L. Verdc.) is a leguminous crop, capable of growing in low-input agricultural systems in semi-arid areas. An F...

Due to evolutionary divergence, sorghum race populations exhibit significant genetic and morphological variation. A k-mer-based sorghum race sequence comparison identified the conserved k-mers of all 272 accessions from sorghum and the race-specific genetic signatures identified the gene variability in 10,321 genes (PAVs). To understand sorghum rac...

The recent Russia–Ukraine conflict has raised significant concerns about global food security, leaving many countries with restricted access to imported staple food crops, particularly wheat and sunflower oil, sending food prices soaring with other adverse consequences in the food supply chain. This detrimental effect is particularly prominent for...

Drought is a major crop production constraint worldwide. Some legume crops are known for their ability to resist water deficit stress. This study evaluated the responses of bambara groundnut (Vigna subterranea (L.) Verdc) and groundnut (Arachis hypogaea (L.) to soil water deficit stress. The experiment was set as a split-plot randomized complete bl...

Fruit and vegetable species and varieties, their wild relatives, and pollinators and other associated organisms underpin diverse food production systems and contribute to worldwide health and nutrition. This biodiversity, however, is threatened, remains poorly conserved, and is largely undocumented. Its loss leads to a narrowing of new food options...

Bambara groundnut (Vigna subterranea (L.) Verdc.) represents an untapped potential for developing robust food systems. This promising but underutilized African grain legume has high nutritional qualities comparable to popular and widely consumed legumes, as well as exceptional resistance to biotic and abiotic stresses. In addition, the crop can gro...

A principal objective in agriculture is to maximise food production; this is particularly relevant with the added demands of an ever increasing population, coupled with the unpredictability that climate change brings. Further improvements in productivity can only be achieved with an increased understanding of plant and crop processes. In this respe...

Tea [Camellia sinensis (L.) O. Kuntze] is mainly grown in low‐ to middle‐income countries (LMIC) and is a global commodity. Breeding programs in these countries face the challenge of increasing genetic gain because the accuracy of selecting superior genotypes is low and resources are limited. Phenotypic selection (PS) is traditionally the primary m...

The combined effects of climate change, increase in world population and dependence on a relatively small selection of crops, are threating the global food security. Despite their limited promotion amongst farmers, seed companies and researchers, underutilised crops could provide alternative sources of nutritionally dense foods and aid in the quest...

Climate change, population growth and increasingly homogenised diets are a threat to food security and human nutritional status. There is an urgent need to incorporate highly nutritious crops into the human diet to provide new sources of nutrition, to diversify agriculture and to meet the challenges of climate change. Winged bean (Psophocarpus tetr...

Amaranth (Amaranthus spp.) is an underutilized C4 vegetable and grain crop which grows successfully in low input environments and has diverse abiotic stress tolerance traits. In addition to being highly nutritious, it is genetically diverse and phenotypically plastic, making it a suitable crop for nutritional security in a rapidly changing climate....

Planetary health brings together intrinsically linked issues of human health and natural systems. This paper reviews evidence of how agrobiodiversity underpins dietary diversity for current human populations in the context of fruits and vegetables, and ways to maintain and improve these for future generations. Both the conservation and sustainable...

Amaranth (Amaranthus spp.) is a highly nutritious, underutilized vegetable and pseudo-cereal crop. It possesses diverse abiotic stress tolerance traits, is genetically diverse and highly phenotypically plastic, making it an ideal crop to thrive in a rapidly changing climate. Despite considerable genetic diversity there is a lack of detailed charact...

Bambara groundnut [Vigna subterranea (L.) Verdc.] is grown in rainfed production systems and suffers from periodic drought stress (DS), leading to yield reductions. Natural genotypic variation for root traits is essential for adaptation to water deficit conditions. However, root traits have not been fully utilised as selection criteria to improve D...

Abstract Bambara groundnut [Vigna subterranea (L.) Verdc.] is an underutilised, protein‐rich and self‐pollinating legume that can withstand high temperature and drought stress and is mainly grown in semi‐arid Africa. In order to dissect the complexity of drought resistance and to use genomic tools for yield enhancement of bambara groundnut in respo...

A sustainable supply of plant protein is critical for future generations. We also need to reduce carbon emissions from agriculture, while increasing resilience in the face of elevated temperatures and climate volatility. Agricultural diversification with more crop options is hampered by limited available genomic resources, lack of understanding of...

While China has transformed its economy over recent decades, challenges such as climate change and land degradation have continued to impact its agriculture. These effects along with changes in diets and growing food imports will force China to look for alternative cropping options. Despite the broad potential of Bambara groundnut (Vigna subterrane...

The underutilised grain legume bambara groundnut (Vigna subterranea) has the potential to contribute significantly to nutritional security. However, the lack of commercial cultivars has hindered its wider adoption and utilisation as a food source. The development of competitive cultivars is impeded by (1) lack of systematic data describing variatio...

Stomata are dynamic structures that control the gaseous exchange of CO2 from the external to internal environment and water loss through transpiration. The density and morphology of stomata have important consequences in crop productivity and water use efficiency, both are integral considerations when breeding climate change resilient crops. The ph...

African rice (Oryza glaberrima) has adapted to challenging environments and is a promising source of genetic variation. We analysed dynamics of photosynthesis and morphology in a reference set of 155 O. glaberrima accessions. Plants were grown in an agronomy glasshouse to late tillering stage. Photosynthesis induction from darkness and the decrease...

Amaranth (Amaranthus tricolor), an underutilized climate smart crop, is highly nutritious and possesses diverse drought tolerance traits, making it an ideal crop to thrive in a rapidly changing climate. Despite considerable studies on the growth and physiology of plants subjected to drought stress, a precise trait phenotyping strategy for drought t...

Background CRISPR activation (CRISPRa) uses non-functional Cas9 endonuclease (dCas9) but retains the genome targeting ability through its single guide RNAs (sgRNAs). CRISPRa is widely utilized as a gene activation system exploiting its ability to recruit various transcriptional activation domains (TADs) to enhance the expression of the target gene(...

The high yielding tenera is the commercial oil palm planting material of choice in Southeast Asia. Notwithstanding this, there is continuous effort to further improve the yield and one way to do this is by addressing the yield components (YCs). Using 4451 SNP and over 600 SSR markers, this study revealed quantitative trait loci (QTL) associated wit...

Crop phenotypic data underpin many pre-breeding efforts to characterize variation within germplasm collections. Although there has been an increase in the global capacity for accumulating and comparing such data, a lack of consistency in the systematic description of metadata often limits integration and sharing. We therefore aimed to understand so...

Fruit and vegetable species and varieties, their wild relatives, and pollinators and other associated organisms underpin diverse food production systems and contribute to worldwide health and nutrition. This biodiversity, however, is threatened, remains poorly conserved, and is largely undocumented. Its loss leads to a narrowing of new crop options...

The economic potential of African leafy vegetables (ALVs) remains obscured by a poorly developed value chain. This scoping review assembled and examined scattered knowledge generated on ALVs across southern Africa, focusing on production, processing, marketing, and consumption. Two electronic databases (Scopus and Web of Science) were screened, and...

Genetic improvement of quality traits in tea (Camellia sinensis (L.) O. Kuntze) through conventional breeding methods has been limited, because tea quality is a difficult and expensive trait to measure. Genomic selection (GS) is suitable for predicting such complex traits, as it uses genome wide markers to estimate the genetic values of individuals...

Drought is major abiotic stress that causes severe crop losses worldwide. Climate predictions indicate that the frequency of droughts will increase, impacting on global food supply. Currently, the agricultural sector is dominated by the three major crops (Zea mays), rice (Oryza spp.) and wheat (Triticum spp.), contributing to an increasingly unifor...

Rapid population growth, climate change, intensive monoculture farming, and resource depletion are among the challenges that threaten the increasingly vulnerable global agri-food system. Heavy reliance on a few major crops is also linked to a monotonous diet, poor dietary habits, and micronutrient deficiencies, which are often associated with diet-...

Oil palm (Elaeis guineensis Jacq.) is the most traded crop among the economically important palm species. Here, we report an extended version genome of E. guineensis that is 1.2 Gb in length, an improvement of the physical genome coverage to 79% from the previous 43%. The improvement was made by assigning an additional 1968 originally unplaced scaf...

Abstract: The growing African population needs a substantial increase in food production along with nutritious food options to address hunger, malnutrition and stunting. The indigenous or naturalized African fruit tree species are inherently nutritious, fortified with minerals, vitamins and antioxidants with high potential to improve the resilience...

Underutilised species such as bambara groundnut (Vigna subterranea (L.) Verdc.) have the potential to contribute significantly to meeting food and nutritional needs worldwide. We evaluated phenotypic traits in twelve bambara groundnut genotypes from East, West and Southern Africa and Southeast Asia and two F 2 bi-parental segregating populations de...

Foxtail millet (Setaria italica) is an important crop species and an emerging model plant for C4 grasses. However, functional genomics research on foxtail millet is challenging because of its long generation time, relatively large stature and recalcitrance to genetic transformation. Here we report the development of xiaomi, a rapid-cycling mini fox...

In Bambara groundnut [Vigna subterranea (L) Verdc], long photoperiods can cause a decline in pod and seed number. While negative photoperiod effects on pod yield have been reported, positive effects and the existence of genotypes less sensitive for photoperiod have not been reported. Ten geographically diverse genotypes were evaluated over 3 years...

Over the past 70 years, the world has witnessed extraordinary growth in crop productivity, enabled by a suite of technological advances, including higher yielding crop varieties, improved farm management, synthetic agrochemicals, and agricultural mechanization. While this “Green Revolution” intensified crop production, and is credited with reducing...

Superior oil yield is always the top priority of the oil palm industry. Short trunk height (THT) and compactness traits have become increasingly important to improve harvesting efficiency since the industry started to suffer yield losses due to labor shortages. Breeding populations with low THT and short frond length (FL) are actually available, su...

The present study searched for candidate genes in five linkage groups (LGs) - T2, T3, OT4, OT6 and T9 hosting the QTLs associated with iodine value (IV) and fatty acid composition (FAC) in an oil palm interspecific hybrid population. Each of the five LGs was successfully anchored to its corresponding chromosomal segment where, a wider repertoire of...

Oil palm is a remarkable crop which in 2017 produced 34% of the world’s vegetable oil from 0.36% of the world’s agricultural land. The fact that it is a perennial ‘tree’ crop growing in the humid tropics under high light intensity accounts for the tenfold advantage in oil yield it has over many annual temperate oil crops, per hectare, per year. How...

The Rab GTPase family plays a vital role in several plant physiological processes including fruit ripening. Fruit softening during ripening involves trafficking of cell wall polymers and enzymes between cellular compartments. Mango, an economically important fruit crop, is known for its delicious taste, exotic flavour and nutritional value. So far,...

Characterizing the morphological variability in root system architecture (RSA) during the sensitive pre-flowering growth stage is important for crop performance. To assess this variation, eight bambara groundnut single genotypes derived from landraces of contrasting geographic origin were selected for root system architecture and rooting distributi...

Underutilised crops contribute only marginally to global food and nutritional security, despite their regional nutritional, economic, and cultural significance. Their potential to make a greater contribution is often overlooked, in part due to the scarcity of data reflecting the range of nutritional variation. Bambara groundnut (BG; Vigna subterran...

Underutilised crops have potential to play an increasing role in the diet of many who may lack adequate nutrition. At present, there appears to be no comprehensive or systematic effort to collate and analyse nutritional composition data, although this is likely to make a significant contribution to global food and nutritional security. For example,...

A total of 170 bambara groundnut (Vigna subterranea) accessions were evaluated using both Simple Sequence Repeats (SSR) and Single Nucleotide Polymorphism (SNP) markers generated using Genotyping-by-Sequencing (GbS) of which 56 accessions were collected from West and East Java. Principal Coordinate Analysis (PCoA), population structure and cluster...

BACKGROUND Food security is recognized as a major global challenge, yet human food‐chain systems are inherently not geared towards nutrition, with decisions on crop and cultivar choice not informed by dietary composition. Currently, food compositional tables and databases (FCT/FCDB) are the primary information sources for decisions relating to diet...

Background: Legitimacy in breeding and commercial crop production depends on optimised protocols to ensure purity of crosses and correct field planting of material. In oil palm, the presence of three fruit forms permits these assumptions to be tested, although only after field planting. The presence of incorrect fruit forms in a cross is a clear s...

Main conclusion Orphan crops can contribute to building resilience of marginal cropping systems as a climate chnage adaptation strategy. Orphan crops play an important role in global food and nutrition security, and may have potential to contribute to sustainable food systems under climate change. Owing to reports of their potential under water sca...

Main conclusion Crops For the Future (CFF), as an entity, has established a broad range of research activities to promote the improvement and adoption of currently underutilised crops. Abstract This paper summarises selected research activities at Crops For the Future (CFF) in pursuit of its mission ‘to develop solutions for diversifying future ag...

Main conclusion Bambara groundnut has the potential to be used to contribute more the climate change ready agriculture. The requirement for nitrogen fixing, stress tolerant legumes is clear, particularly in low input agriculture. However, ensuring that existing negative traits are tackled and demand is stimulated through the development of markets...

Bambara groundnut (Vigna subterranea (L) Verdc.) is an underutilized legume native to sub-Saharan Africa, where it is grown at low levels by many farmers as a component of household food and nutritional security. It is generally regarded as drought tolerant and fills the same agroecological niche as peanut (Arachis hypogaea L). Molecular research i...

Meiotic crossovers in outbred species, such as oil palm (Elaeis guineensis Jacq., 2n = 32) contribute to allelic re-assortment in the genome. Such genetic variation is usually exploited in breeding to combine positive alleles for trait superiority. A good quality reference genome is essential for identifying the genetic factors underlying traits of...

Main Conclusion Winged bean is popularly known as “One Species Supermarket” for its nutrient-dense green pods, immature seeds, tubers, leaves, and mature seeds. This underutilised crop has potential beneficial traits related to its biological nitrogen-fixation to support low-input farming. Drawing from past knowledge, and based on current technolog...

Winged bean (P. tetragonolobus (L.) DC.) is a leguminous crop that could contribute towards food security in tropical areas, but whose growth and development is still poorly understood. In order to develop improved individuals for increased green pod and seed productivity, we investigated the factors involved in winged bean plant architecture, deve...

Global dependence on only a few crops for food and non-food uses is risky due to the multifaceted challenges that crop production faces. One such challenge is climate change and its effects on food production. Emerging evidence suggests that climate change will cause shifts in crop production areas and yield loss due to more unpredictable and hosti...