Scott E. Miller

Smithsonian Institution

We use community phylogenetics to elucidate the community assembly mechanisms for Geometridae moths (Lepidoptera) collected along a complete rainforest elevational gradient (200–3700 m a.s.l) on Mount Wilhelm in Papua New Guinea. A constrained phylogeny based on COI barcodes for 604 species was used to analyse 1390 species x elevation occurrences a...

Global biodiversity gradients are generally expected to reflect greater species replacement closer to the equator. However, empirical validation of global biodiversity gradients largely relies on vertebrates, plants, and other less diverse taxa. Here we assess the temporal and spatial dynamics of global arthropod biodiversity dynamics using a beta-...

The majority of multi-cellular terrestrial life is found in tropical forests and is either an invertebrate or a plant: for decades ecologists have sought to understand why. As global change erodes the list of extant species on our planet quantifying what species remain, along with their origins and ecology, contributes to our ability to preserve ec...

We analyse anchored hybrid enrichment data from densely sampled tribes and subfamilies of Notodontidae (Prominent Moths). Notodontidae are monophyletic except for an assemblage of genera related to Thacona Walker (=Scrancia Holland), which had been recognized at either the tribal or subfamilial rank within Notodontidae. We elevate and re-describe S...

The Caribbean archipelago of Puerto Rico supports a diverse flora and fauna and is located in a region characterized by complex socio‐economic and environmental change. The diversity of entomofauna across Puerto Rico has received considerable attention in wide‐scale research over the last century, with particular emphasis on the order Lepidoptera a...

Two new species of Xenolepis are described and illustrated from Papua New Guinea: X. neoguineana Brown & Miller, n. sp., and X. slipihalo Brown & Miller, n. sp. All specimens examined were collected as larvae, most from Syzygium spp. (Myrtaceae), but a few from Garcinia (Clusiaceae), Ziziphus (Rhamnaceae), Amyema (Loranthaceae), and Gomphandra (Ste...

The tropical rainforest elevation gradients, extending from lowlands to treeline, often represent global maxima of biodiversity and are models for community studies. We surveyed geometrid moths along a complete rainforest gradient from 200 to 3700 m asl. in Papua New Guinea. The 16,424 moths collected with light traps represented 1102 species, a hi...

Natural history collections are the physical repositories of our knowledge on species, the entities of biodiversity. Making this knowledge accessible to society – through, for example, digitisation or the construction of a validated, global DNA barcode library – is of crucial importance. To this end, we developed and streamlined a workflow for ‘mus...

The use of DNA barcoding has revolutionised biodiversity science, but its application depends on the existence of comprehensive and reliable reference libraries. For many poorly known taxa, such reference sequences are missing even at higher-level taxonomic scales. We harvested the collections of the Smithsonian’s National Museum of Natural History...

We performed a molecular phylogenetic analysis on the family Euteliidae to clarify deep divergences and elucidate evolutionary relationships at the level of the subfamily, tribe, and genus. Our dataset consists of 6.3 kbp of one mitochondrial and seven nuclear DNA loci and was analysed using model-based phylogenetic methods, that is, maximum likeli...

We present the first dated molecular phylogeny of the Cerurinae moths (Notodontidae), based on sequence data for 666 loci generated by anchored hybrid enrichment. Monophyly of Cerurinae is corroborated, which includes the following genera: Pararethona Janse, Pseudorethona Janse, Oreocerura Kiriakoff, stat. rev., Cerurella Kiriakoff, Notocerura Kiri...

We present the results of the first phylogenomic analyses based on anchored hybrid enrichment (AHE) data from densely sampled tribes and subfamilies of Notodontidae (Prominent Moths). Our analyses reveal the family’s polyphyly with respect to an assemblage of genera related to Scrancia Holland that has been variously recognized at the tribal or sub...

Global gradients in species biodiversity are expected to reflect tighter packing of species closer to the equator. Yet, empirical validation of these patterns has so far focused on less diverse taxa, with comparable assessments of mega-diverse groups historically constrained by the taxonomic impediment. Here we assess the temporal and spatial turno...

Aim: Global gradients in species biodiversity may or may not be associated with greater species replacement closer to the equator. Yet, empirical validation of these patterns has so far focused on less diverse taxa, with comparable assessments of mega-diverse groups historically constrained by the taxonomic impediment. Location: Global Time period:...

In this study, we present the skeleton phylogenetic hypothesis, hostplant associations and divergence time estimations for one of the less studied families of Lepidoptera (Insecta), Euteliidae (Noctuoidea), based on a comprehensive taxon coverage from all zoogeographical regions of the world. The caterpillars of euteliid moths are highly speciali...

Insect herbivores have evolved a broad spectrum of adaptations in response to the diversity of chemical defences employed by plants. Here we focus on two species of New Guinean Asota and determine how these specialist moths deal with the leaf alkaloids of their fig (Ficus) hosts. As each focal Asota species is restricted to one of three chemically...

Insect herbivores have evolved a broad spectrum of adaptations in response to the diversity of chemical defences employed by plants. Here we focus on two species of New Guinean Asota and determine how these specialist moths deal with the leaf alkaloids of their Ficus fig hosts. As each focal Asota species is restricted to one of three chemically di...

Developing an efficient and effective protocol for capturing biological data held in natural history collections is critically important for many emergent projects in biodiversity, such as the construction of a validated, global DNA barcode reference library. To this end, we developed and streamlined a workflow for ‘museum harvesting’ of authoritat...

The use of DNA barcoding has revolutionized biodiversity science, but its application depends on the existence of comprehensive and reliable reference libraries. For many poorly known taxa, such reference sequences are missing even at higher-level taxonomic scales. We harvested the collections of the Smithsonian’s National Museum of Natural History...

A molecular phylogeny of the subfamily Rogadinae is presented for 469 species in 52 genera representing all tribes and subtribes. The data comprise cytochrome c oxidase I sequences (DNA barcodes), together with a broad representation of 28S rDNA D2-D3 expansion region, EF1-α gene and 16S rDNA fragments. To test monophyly, most genera were represent...

In the tropics, antagonistic seed predation networks may have different properties than mutualistic pollination and seed dispersal networks, but the former have been considerably less studied. We tested whether the structure of antagonistic tripartite networks composed of host plants, insects developing within seeds and fruits, and their insect par...

Understanding spatiotemporal trends on insect-plant interaction networks is essential to unveil the ecological and evolutionary processes driving herbivore specialisation. However, community studies accounting for temporal dynamics in host-plant specialisation of herbivorous insects are surprisingly scarce. Here, we investigated how seasonality aff...

Molecular identification is increasingly used to speed up biodiversity surveys and laboratory experiments. However, many groups of organisms cannot be reliably identified using standard databases such as GenBank or BOLD due to lack of sequenced voucher specimens identified by experts. Sometimes a large number of sequences are available, but with to...

Although the butterflies of North America have received considerable taxonomic attention, overlooked species and instances of hybridization continue to be revealed. The present study assembles a DNA barcode reference library for this fauna to identify groups whose patterns of sequence variation suggest the need for further taxonomic study. Based on...

Molecular identification is increasingly used to speed up biodiversity surveys and laboratory experiments. However, many groups of organisms cannot be reliably identified using standard databases such as GenBank or BOLD due to lack of sequenced voucher specimens identified by experts. Sometimes a large number of sequences are available, but with to...

1. Assemblages of insect herbivores are structured by plant traits such as nutrient content, secondary metabolites, physical traits, and phenology. Many of these traits are phylogenetically conserved, implying a decrease in trait similarity with increasing phylogenetic distance of the host plant taxa. Thus, a metric of phylogenetic distances and re...

1. Assemblages of insect herbivores are structured by plant traits such as nutrient content, secondary metabolites, physical traits, and phenology.

We are destroying the life-support systems of Earth rapidly, making our future uncertain. Ecosystems—the complex sets of organisms that form the globe's living landscape—regulate the atmosphere, water, and soils. They supply humanity its food, most medicines, and many other essential products, and they fill our lives with beauty. But they are falli...

In arthropod community ecology, species richness studies tend to be prioritised over those investigating patterns of abundance. Consequently, the biotic and abiotic drivers of arboreal arthropod abundance are still relatively poorly known. In this cross-continental study, we employ a theoretical framework in order to examine patterns of covariance...

Applications of biological knowledge, such as forensics, often require the determination of biological materials to a species level. As such, DNA-based approaches to identification, particularly DNA barcoding, are attracting increased interest. The capacity of DNA barcodes to assign newly encountered specimens to a species relies upon access to inf...

Elevational gradients affect the production of plant secondary metabolites through changes in both biotic and abiotic conditions. Previous studies have suggested both elevational increases and decreases in host-plant chemical defences. We analysed the correlation of alkaloids and polyphenols with elevation in a community of nine Ficus species along...

Reliable molecular identification of vertebrate species from morphologically unidentifiable tissue is critical for the prosecution of illegally-traded wildlife products, conservation-based biodiversity research, and identification of blood-meal hosts of hematophagous invertebrates. However, forensic identification of vertebrate tissue relies on seq...

Vertical niche partitioning might be one of the main driving forces explaining the high diversity of forest ecosystems. However, the forest's vertical dimension has received limited investigation, especially in temperate forests. Thus, our knowledge about how communities are vertically structured remains limited for temperate forest ecosystems. In...

The early detection of and rapid response to invasive species (EDRR) depends on accurate and rapid identification of non-native species. The 2016–2018 National Invasive Species Council Management Plan called for an assessment of US government (federal) capacity to report on the identity of non-native organisms intercepted through early detection pr...

Research on canopy arthropods has progressed from species inventories to the study of their interactions and networks, enhancing our understanding of how hyper-diverse communities are maintained. Previous studies often focused on sampling individual tree species, individual trees or their parts. We argue that such selective sampling is not ideal wh...

Interception of potential invasive species at ports-of-entry is essential for effective biosecurity and biosurveillance programs. However, taxonomic assessment of the immature stages of most arthropods is challenging; characters for identification are often dependent on adult morphology and reproductive structures. This study aims to strengthen the...

36 Forensic studies often require the determination of biological materials to a species level. As such, DNA-37 based approaches to identification, particularly DNA barcoding, are attracting increased interest. The 38 capacity of DNA barcodes to assign newly encountered specimens to a species relies upon access to 39 informatics platforms, such as...

The top‐down and indirect effects of insects on plant communities depend on patterns of host use, which are often poorly documented, particularly in species‐rich tropical forests. At Barro Colorado Island, Panama, we compiled the first food web quantifying trophic interactions between the majority of co‐occurring woody plant species and their inter...

Reliable molecular identification of vertebrate species from morphologically unidentifiable tissue is critical for prosecution of illegally traded wildlife products, biodiversity research for conservation purposes, and identification of blood-meal hosts of hematophagous invertebrates. However, forensic identification of vertebrate tissue relies on...

The Lactura Walker, 1854 fauna north of Mexico is revised. Six species are documented, one new species Lacturanalli Matson & Wagner, sp. n. is described, and two new synonymies are proposed: Lacturapsammitis (Zeller, 1872), syn. n. and L.rhodocentra (Meyrick, 1913), syn. n. One new subspecies Lacturasubfervenssapeloensis Matson & Wagner, ssp. n. is...

Insect seed predators are important agents of mortality for tropical trees, but little is known about the impact of these herbivores in rainforests. During 3 years at Khao Chong (KHC) in southern Thailand we reared 17,555 insects from 343.2 kg or 39,252 seeds/fruits representing 357 liana and tree species. A commented list of the 243 insect species...

Bacotoma Moore, 1885 is reviewed including the description of a new species from Hainan Island, B. hainanensissp. nov. , based on an analysis that combined morphology and mitochondrial DNA. The following taxonomic changes are proposed: Platamonina Shaffer & Munroe, 2007, syn. nov. is synonymized with Bacotoma and ten species are included: B. amplia...

Secondary succession is well‐understood, to the point of being predictable for plant communities, but the successional changes in plant‐herbivore interactions remains poorly explored. This is particularly true for tropical forests, despite the increasing importance of early successional stages in tropical landscapes. Deriving expectations from succ...

Aim Insects feeding on seeds and fruits represent interesting study systems, potentially able to lower the fitness of their host plants. In addition to true seed eaters, a suite of insects feed on the fleshy parts of fruits. We examined the likelihood of community convergence in whole insect assemblages attacking seeds/fruits in three tropical rain...

Online full-text: http://rdcu.be/w4sq Resource specialization is a key concept in ecology, but it is unexpectedly difficult to parameterize. Differences in resource availability, sampling effort and abundances preclude comparisons of incompletely sampled biotic interaction webs. Here, we extend the distance-based specialization index (DSI) that mea...

A long-term goal in evolutionary ecology is to explain the incredible diversity of insect herbivores and patterns of host plant use in speciose groups like tropical Lepidoptera. Here, we used standardized food-web data, multigene phylogenies of both trophic levels and plant chemistry data to model interactions between Lepidoptera larvae (caterpilla...

Escalation (macroevolutionary increase) or divergence (disparity between relatives) in trait values are two frequent outcomes of the plant-herbivore arms race. We studied the defences and caterpillars associated with 21 sympatric New Guinean figs. Herbivore generalists were concentrated on hosts with low protease and oxidative activity. The distrib...

We have little knowledge of the response of invertebrate assemblages to climate change in tropical ecosystems, and few studies have compiled long-term data on invertebrates from tropical rainforests. We provide an updated list of the 72 species of Saturniidae moths collected on Barro Colorado Island (BCI), Panama, during the period 1958-2016. This...

The U.S. Culture Collection Network held a meeting to share information about how culture collections are responding to the requirements of the recently enacted Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilization to the Convention on Biological Diversity (CBD). The meeting inc...

Arthropods represent most of terrestrial biodiversity and are known to perform most of the crucial ecosystem services. In tropical forest, especially, we have a very incomplete understanding of how arthropod communities are assembled taxonomically but above all functionally. Species that share similar functional attributes (but not necessarily a co...

We studied a community of frugivorous Lepidoptera in the lowland rainforest of Papua New Guinea. Rearing revealed 122 species represented by 1,720 individuals from 326 woody plant species. Only fruits from 52% (171) of the plant species sampled were attacked. On average, Lepidoptera were reared from 1 in 89 fruits and a kilogram of fruit was attack...

The list of lepidopterans reared from individual plant species. Ns = number of specimen reared, Nb = number of barcodes, Np = number of host plant species used by individuals, S = specificity (categorized as monophagous (M) for species feeding on a single plant species, congeneric (CG), confamilial (CF), and allofamilial (AF) for species feeding on...

We use three examples—field and ecology-based inventories in Costa Rica and Papua New Guinea and a museum and taxonomic-based inventory of the moth family Geometridae—to demonstrate the use of DNA barcoding (a short sequence of the mitochondrial COI gene) in biodiversity inventories, from facilitating workflows of identification of freshly collecte...

The Global Registry of Biodiversity Repositories is an online metadata resource for biodiversity collections, the institutions that contain them, and associated staff members. The registry provides contact and address information, characteristics of the institutions and collections using controlled vocabularies and free-text descripitons, links to...

It is essential that any DNA barcode reference library be based upon correctly identified specimens. The Barcode of Life Data Systems (BOLD) requires information such as images, geo-referencing, and details on the museum holding the voucher specimen for each barcode record to aid recognition of potential misidentifications. Nevertheless, there are...

A community of frugivorous insects was studied by rearing of 25 565 individual insects representing three orders (Coleoptera, Lepidoptera and Diptera except Drosophilidae) from 326 woody plant species in a lowland rainforest in Papua New Guinea. Fruits from 19.3% of plant species were not attacked by any insect order, 33.4% of plant species were at...

Aim To determine the importance of different biogeographical processes (vicariance, dispersal, long‐distance dispersal and establishment or LDDE ) for the current distribution of metalmark moths, a group of small insects, using a time‐calibrated molecular tree. Location Global. Methods We sampled 104 species of metalmark moths with representative...

Two new species, Syntomaula xanthofasciata n. sp. and S. flavoangulata n. sp. (Lepidoptera: Gelechioidea: Cosmopterigidae) are described from Papua New Guinea and are associated with Neonauclea obversifolia (Valeton) Merr. & L.M. Perry, Uncaria appendiculata Benth., and Uncaria cordata (Lour.) Merr. (Rubiaceae). Macromorphological features and DNA...

Type specimens have high scientific importance because they provide the only certain connection between the application of a Linnean name and a physical specimen. Many other individuals may have been identified as a particular species, but their linkage to the taxon concept is inferential. Because type specimens are often more than a century old an...

Background Comprehensive biotic surveys, or ‘all taxon biodiversity inventories’ (ATBI), have traditionally been limited in scale or scope due to the complications surrounding specimen sorting and species identification. To circumvent these issues, several ATBI projects have successfully integrated DNA barcoding into their identification procedures...