Rui Rosa

University of Lisbon | UL · MARE-Marine and Environmental Sciences Centre

Sharks play a key role in the structure of marine food webs, but are facing major threats due to overfishing and habitat degradation. Although sharks are also assumed to be at relatively high risk from climate change due to a low intrinsic rate of population growth and slow rates of evolution, ocean acidification (OA) has not, until recently, been...

The acceleration of global warming and increased vulnerability of marine social-ecological systems affect the benefits provided by the ocean. Spatial planning of marine areas is vital to balance multiple human demands and ensure a healthy ocean, while supporting global ocean goals. To thrive in a changing ocean though, marine spatial planning (MSP)...

The ongoing digital revolution in the age of big data is opening new research opportunities. Culturomics and iEcology, two emerging research areas based on the analysis of online data resources, can provide novel scientific insights and inform conservation and management efforts. To date, culturomics and iEcology have been applied primarily in the...

Over the past decades, three major challenges to marine life have emerged as a consequence of anthropogenic emissions: ocean warming, acidification and oxygen loss. While most experimental research has targeted the first two stressors, the last remains comparatively neglected. Here, we implemented sequential hierarchical mixed-model meta-analyses (...

Climate-driven expansions of ocean hypoxic zones are predicted to concentrate pelagic fish in oxygenated surface layers, but how expanding hypoxia and fisheries will interact to affect threatened pelagic sharks remains unknown. Here, analysis of satellite-tracked blue sharks and environmental modelling in the eastern tropical Atlantic oxygen minimu...

Cleaning symbioses are key mutualistic interactions where cleaners remove ectoparasites and tissues from client fishes. Such interactions elicit beneficial effects on clients’ ecophysiology, with cascading effects on fish diversity and abundance. Ocean acidification (OA), resulting from increasing CO 2 concentrations, can affect the behavior of cle...

Fisheries ecosystem-based management is an important tool for sustainable harvesting of fisheries worldwide. Knowledge of trophic interactions is crucial as changes in trophic balances can induce severe changes in the structure of marine communities. While advocated for deep-sea fisheries, a lack of studies in benthopelagic area persist. The Antarc...

Coral reef fish exhibit a large variety of behaviours crucial for fitness and survival. The cleaner wrasse Labroides dimidiatus displays cognitive abilities during interspecific interactions by providing services of ectoparasite cleaning, thus serving as a good example to understand the processes of complex social behaviour. However, little is know...

Coastal seagrass meadows provide a variety of essential ecological and economic services, in-cluding nursery grounds, sediment stabilization, nutrient cycling, coastal protection, and blue carbon sequestration. However, these ecosystems are highly threatened by ongoing climatic change. This study aimed to understand how the dwarf eelgrass Zostera n...

In recent years, validation of seafood authenticity and provenance has attracted the attention of authorities and consumers. Increasing levels of food fraud has raised awareness regarding seafood traceability, especially in highly valuable and highly consumed seafood products, such as the common octopus (Octopus vulgaris). Seafood traceability stud...

Coastal marine ecosystems are currently being exposed to climate change at a much faster rate than many other ecosystems, with coastal species being exposed to multiple stressors. Cephalopod mollusks play a pivotal role in marine trophic webs, and most are “keystone” species due to their influence on ecosystem dynamics. In this study, we characteri...

Despite the long evolutionary history of this group, the challenges brought by the Anthropocene have been inflicting an extensive pressure over sharks and their relatives. Overexploitation has been driving a worldwide decline in elasmobranch populations, and rapid environmental change, triggered by anthropogenic activities, may further test this gr...

Dietary descriptions based on stomach content are pervasive regardless of the biases concerning its methodology, statistics and descriptors. We here review different biases on the stomach content analysis, sample size, and indices used for cephalopods. These mollusks are key components in marine food webs and most are characterized as active predat...

Stable isotope compositions of carbon and nitrogen (expressed as δ ¹³ C and δ ¹⁵ N) from the European common cuttlefish ( Sepia officinalis ) were measured in order to evaluate the utility of using these natural tracers throughout the Northeast Atlantic Ocean and Mediterranean Sea (NEAO-MS). Mantle tissue was obtained from S. officinalis collected...

Reproductive fitness is defined by the successful passing of an individual’s genes to the next generation. Cephalopods that mate in groups, in particular coastal squid and cuttlefish species, have evolved complex sexual tactics in order to maximize reproductive success (Morse and Huffard 2019). Through dynamic skin patterning accompanied by typical...

Dwarf eelgrass Zostera noltii meadows are found in estuarine coastal areas across the north-eastern Atlantic, where they provide key ecosystem services, including nursery grounds, sediment stabilization, nutrient cycling and carbon sequestration. These blue carbon ecosystems are being subjected to several anthropogenic pressures, including climate...

Coastal areas host some of the planet’s most productive ecosystems, providing life-sustaining ecological services and several benefits to humankind, while also being some of the most threatened areas (e.g. by globalization, climate change, and biological invasion). Salt marshes are coastal habitats with a key role in food and shelter provisioning,...

In the pelagic environment diel vertical movements (DVM) are widespread across taxa, from zooplankton ascending from day-time depths into surface layers at night to avoid visual predators, to apex predators following prey movements to maximise foraging opportunities. The drivers of DVM in large predators such as pelagic sharks have only recently be...

Coral reef fish exhibit a large variety of behaviours crucial for fitness and survival. The cleaner wrasse Labroides dimidiatus displays cognitive abilities during interspecific interactions by providing services of ectoparasite cleaning, thus serving as a good model to understand the processes of complex social behaviour. However, little is known...

Cephalopods are an important component of Southern Ocean food webs but studies analysing their habitat and trophic ecology are scarce. Here, we use the Antarctic toothfish Dissostichus mawsoni as a biological sampler of the Southern Ocean's cephalopods in the Ross, Amundsen, and D'Urville Seas. Ten cephalopod taxa were identified in the diet of the...

The available data on trace elements (TE) of deep-sea organisms is scarce and nonexistent for rare earth elements (REE). Hence, this study characterizes REE and TE in five porifera genera (Jaspis, Geodia, Hamacantha, Leiodermatium, Poliopogon) collected in deep-sea areas (between 481 and 2656 m) of the North Atlantic. Aluminium was the most common...

Gnathiid isopods, common fish ectoparasites, can affect fish physiology, behaviour and survival. Gnathiid juveniles emerge from the benthos to feed on fish blood. In the Caribbean, gnathiids are positively associated with dead coral and negatively associated with live coral, due to coral predation on gnathiids. However, such interactions were unstu...

The European eel (Anguilla anguilla) has attracted scientific inquiry for centuries due to its singular biological traits. Within the European Union, glass eel fisheries have declined sharply since 1980, from up to 2000 t (t) to 62.2 t in 2018, placing wild populations under higher risk of extinction. Among the major causes of glass eels collapse,...

Unmanned Aerial Vehicles (UAVs), or drones, have recently emerged as a relatively affordable and accessible method for studying wildlife. Vertical Take-off and Landing (VTOL) UAVs are appropriate for morphometric, behavioural, abundance and demographic studies of marine mammals, providing a stable, nonintrusive and highly manoeuvrable platform. Pre...

Learning can occur through self-experience with the environment, or through the observation of others. The latter allows for adaptive behaviour without trial-and-error, thus maximizing individual fitness. Perhaps given their mostly solitary lifestyle, cuttlefish have seldomly been tested under observational learning scenarios. Here we used a multi-...

Cooperation is ubiquitous in nature, and occurs at all levels of biological complexity, providing immediate direct benefits and/or future indirect benefits to participating partners (Lehmann and Keller 2006, Bshary and Bergmüller 2008).

Trace elements are potentially critical contaminants of aquatic environments and fish, occupying upper trophic levels, are especially vulnerable to bioaccumulation. Due to public health concerns, however, data on the elemental composition of non-commercially important marine species are particularly lacking. Ocean sunfish (Mola spp.) attain a low c...

Ocean acidification is a consequence of chemical changes driven mainly by a continuous uptake of carbon dioxide, resulting in pH decrease. This phenomenon represents an additional threat to marine life, with expected effects ranging from changes in behavioral responses and calcification rates to the potential promotion of oxidative stress. To unrav...

Off mainland Portugal, the common dolphin (Delphinus delphis) is the most sighted cetacean, although information on this species is limited. The Atlantic coast of Southern Portugal is characterized by an intense wind-driven upwelling, creating ideal conditions for common dolphins. Using data collected aboard whale-watching boats (1929 sightings and...

Natural markers (δ13C and δ18O stable isotopes) in the cuttlebones of the European common cuttlefish (Sepia officinalis) were determined for individuals collected across a substantial portion of their range in the Northeast Atlantic Ocean (NEAO) and Mediterranean Sea. Cuttlebone δ13C and δ18O were quantified for core and edge material to characteri...

As Earth’s temperature continues to rise, sudden warming events, designated as marine heatwaves (MHWs), are becoming more frequent and longer. This phenomenon is already shown to significantly impact marine ecosystems and respective fauna. While experimental acclimation to higher temperatures is known to affect predatory behavior, metabolism and ov...

Carbon dioxide concentration in the atmosphere is expected to continue rising by 2100, leading to a decrease in ocean pH in a process known as ocean acidification (OA). OA can have a direct impact on calcifying organisms, including on the cuttlebone of the common cuttlefish Sepia officinalis. Moreover, nutritional status has also been shown to affe...

The consequences of human influence can arise in vertebrates as primary, secondary, or even tertiary stressors and may be especially detrimental for slow growing species with long generation times (i.e., K-selected species). Here, we review the impacts of both direct and indirect human interactions on the reproductive biology of elasmobranchs. With...

An array of anthropogenic pressures is affecting tropical ecosystems, posing major conservation challenges for scientists, stakeholders and populations. Illegal cyanide fishing is one of the major threats to Indo-Pacific coral reefs, targeting a multitude of colorful species for the marine aquarium trade as well as large-sized groupers and wrasses...

Mercury (Hg) is globally recognized as a persistent chemical contaminant that accumulates in marine biota, thus constituting an ecological hazard, as well as a health risk to seafood consumers. Climate change-related stressors may influence the bioaccumulation, detoxification, and toxicity of chemical contaminants, such as Hg. Yet, the potential in...

Fish are frequently exposed to harmful algal blooms (HAB) and to related toxins. However, the biological effects of okadaic acid (OA), the most abundant and frequent HAB-toxin in Europe, South America and Asia, have been poorly investigated. In this study, fish swimming performance and metabolic rates were investigated in juveniles of Zebra seabrea...

Myctophids are key members of mesopelagic communities with a world biomass estimated at 600 million tons. They play a central role in oceanic food webs and are known to perform diel vertical migrations, crossing the thermocline and reaching the oxygen minimum zone, however, very scarce information exists on trace element content in these organisms....

The juveniles of gnathiid isopods are one of the most common fish ectoparasites in marine habitats and cause deleterious effects on fish by feeding on host blood and lymph. Reef fishes tend to engage in cooperative interactions with cleaning organisms to reduce their ectoparasite load. Ocean acidification (OA) pose multiple threats to marine life....

The vulnerability of early fish stages represents a critical bottleneck for fish recruitment; therefore, it is essential to understand how climate change affects their physiology for more sustainable management of fisheries. Here, we investigated the effects of warming (OW; +4 °C) and acidification (OA; ΔpH = 0.5) on the heart and oxygen consumptio...

Recent studies have shown that coastal and shelf cephalopod populations have increased globally over the last six decades. Although cephalopod landings are dominated by the squid fishery, which represents nearly 80% of the worldwide cephalopod catches, octopuses and cuttlefishes represent ∼10% each. Total reported global production of octopuses ove...

Recent studies have shown that coastal and shelf cephalopod populations have increased globally over the last six decades. Although cephalopod landings are dominated by the squid fishery, which represents nearly 80% of the worldwide cephalopod catches, octopuses and cuttlefishes represent ∼10% each. Total reported global production of octopuses ove...

Ocean acidification is one of the many consequences of climate change. Various studies suggest that marine organisms' behaviour will be impaired under high CO2. Here, we show that the cognitive performance of the cleaner wrasse, Labroides dimidiatus, has not suffered from the increase of CO2 from pre-industrial levels to today, and that the standin...

Atmospheric CO2 levels have been rising due to an increase in anthropic activities and its implications over marine ecosystems are unprecedented. The present study focused on the effects of ocean acidification (OA) on key hematological parameters of the juvenile small-spotted catsharks (Scyliorhinus canicula). Eggs were reared throughout the entire...

Cleaning interactions are textbook examples of mutualisms. On coral reefs, most fishes engage in cooperative interactions with cleaners fishes, where they benefit from ectoparasite reduction and ultimately stress relief. Furthermore, such interactions elicit beneficial effects on clients' ecophysiology. However, the potential effects of future ocea...

Wastewater effluents are teeming with organisms, nutrients and chemical substances which water treatment processes fail to remove. Among these substances, pharmaceuticals such as antidepressants are a frequent occurrence, and have been reported to lead to severe effects in the physiology and behaviour of non-target marine species across taxa. Venla...

Within the context of global climate change and overfishing of fish stocks, there is some evidence that cephalopod populations are benefiting from this changing setting. These invertebrates show enhanced phenotypic flexibility and are found from polar regions to the tropics. Yet, the global patterns of species richness in coastal cephalopods are no...

The oceanic uptake of carbon dioxide (CO2) is increasing and changing the seawater chemistry, a phenomenon known as ocean acidification (OA). Besides the expected physiological impairments, there is an increasing evidence of detrimental OA effects on the behavioral ecology of certain marine taxa, including cephalopods. Within this context, the main...

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Freezing, dehydration, salinity variations, hypoxia or anoxia are some of the environmental constraints that many organisms must frequently endure. Organisms adapted to these stressors often reduce their metabolic rates to maximize their chances of survival. However, upon recovery of environmental conditions and basal metabolic rates, cells are aff...

Introduction: Nowadays, the evaluation of the quality of food products is fundamental to strengthen the confidence of consumers. The Quality Index Method (QIM) and analytical methodologies (e.g. HPLC, LC-MS-MS, GC-MS) are essential to ensure seafood quality and to prevent the marketability of unsafe products. Usually, the most common techniques are...

Sharks have been facing unprecedented pressure over the last decades, and ocean acidification may represent an additional threat, particularly during their most susceptible life stages. Hence, the present study aimed to investigate the effects of ocean acidification (control pCO 2 ~ 400 μatm; high pCO 2 ~ 900 μatm) on the growth, swimming performan...

The effects of body size and season on the elemental composition of ocean sunfish Mola mola were assessed for the first time. A total of 57 by-caught juvenile specimens measuring between 31.8 and 120.3 cm were sampled in spring and autumn. Concentrations of trace elements (three essential - Co, Cu, Zn, and three non-essential - As, Cd, Pb) were det...

The dramatic decline of European eel (Anguilla anguilla) populations over recent decades has attracted considerable attention and concern. Furthermore, little is known about the sensitivity of the early stages of eels to projected future environmental change. Here, we investigated, for the first time, the potential combined effects of ocean warming...