Rohit Chauhan

Rohit Chauhan
CSIR - Institute of Himalayan Bioresource Technology | IHBT · Bioinformatics Research Area

MCA

About

29
Publications
4,825
Reads
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328
Citations
Additional affiliations
December 2010 - May 2014
CSIR - Institute of Himalayan Bioresource Technology
Position
  • Project Managerfellow

Publications

Publications (29)
Article
Full-text available
Nitrate is the main source of inorganic nitrogen for plants, which also act as signaling molecule. Present study was aimed to understand nitrate regulatory mechanism in Brassica juncea cultivars, with contrasting nitrogen-use-efficiency (NUE) viz. Pusa Bold (PB, high-NUE) and Pusa Jai Kisan (PJK, low-NUE), employing RNA-seq approach. A total of 403...
Article
Full-text available
Abiotic stresses cause accumulation of reactive oxygen species (ROS), such as hydrogen peroxide (H2O2) in plants. Sophisticated mechanisms are required to maintain optimum level of H2O2 that acts as signalling molecule regulating adaptive response to salt stress. CuZn superoxide dismutase (CuZn-SOD) and ascorbate peroxidase (APX) constitute first...
Article
Full-text available
Drought tolerance is an attribute maintained in plants by cross-talk between multiple and cascading metabolic pathways. Without a sequenced genome available for horse gram, it is difficult to comprehend such complex networks and intercalated genes associated with drought tolerance of horse gram (Macrotyloma uniflorum). Therefore, de novo transcript...
Article
Full-text available
Non-coding elements such as miRNAs play key regulatory roles in living systems. These ultra-short, ∼21 bp long, RNA molecules are derived from their hairpin precursors and usually participate in negative gene regulation by binding the target mRNAs. Discovering miRNA candidate regions across the genome has been a challenging problem. Most of the exi...
Data
Total sequences used in training and testing datasets of miR-BAG for different species and benchmarking of various tools. (DOC)
Data
Implementation details for parallelism in miR-BAG. (DOC)
Data
The top 15 feature scores along with the feature names and type of the features obtained after feature selection for every species. (DOC)
Data
Sequence data for novel miRNAs identified in Bos taurus genome, using the NGS module of miR-BAG. (DOC)
Data
The statistics of all conventional features used by previously existing tools. (XLS)
Data
Comparative ROC plots for different precursor identification tools. (TIFF)
Data
Web-server and standalone implementation details for miR-BAG. (PDF)
Data
Energy and Structural profile matrix score plots drawn between the positive and negative instances for all target species, depicting the distribution patterns for positive and negative instances. (DOC)

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