Robin William Baird

Cascadia Research Collective

Natural populations that are rare, cryptic or inaccessible provide a monumental challenge to monitoring, as adequate data are extremely difficult to collect. Surveys often encompass only a small portion of a population's range due to difficult terrain or inclement weather, especially for populations with extensive ranges. Thus, to maximise encounte...

Cookiecutter sharks ( Isistius spp. ) are small pelagic squaloid sharks found throughout tropical and sub-tropical waters that are known to feed opportunistically on a range of prey, including animals much larger than themselves. Short-finned pilot whales ( Globicephala macrorhynchus ) are resident to Hawaiʻi Island and are often observed with fres...

Background To tag large marine vertebrates, without the need to catch them, avoiding using barbs for tag retention, and precisely controlling tag location, the remote Tag Attachment Device on a pole (TADpole) was developed. This allows single-pin tags (Finmount, Wildlife Computers) to be attached to the dorsal fins of free-swimming large marine ver...

Here we update U.S. West Coast Biologically Important Areas (BIAs) that were published in 2015 using new data and approaches. Additionally, BIAs were delineated for two species that were not delineated in the 2015 BIAs: fin whales and Southern Resident killer whales (SRKW). While harbor porpoise BIAs remained the same, substantial changes were made...

Small, island-associated populations of cetaceans have evolved around numerous oceanic islands, likely due to habitat discontinuities between nearshore and offshore waters. However, little is known about the ecology and structure of cetacean populations around the Mariana Islands, a remote archipelago in the western Pacific Ocean. We present sighti...

Context Funding agencies are often unlikely to fund research on rarely-encountered species and limited time is usually spent with such species when they are not the focus of research. Thus, knowledge of these species often lags behind their encounter rates. Aims To gain information on rarely-encountered odontocetes in Hawai‘i while simultaneously s...

Understanding environmental drivers of species’ behavior is key for successful conservation. Within cetacean research, studies focused on understanding such drivers often consider local conditions (e.g., sea surface temperature), but rarely include large-scale, long-term parameters such as climate indices. Here we make use of long-term passive acou...

Introduction: Worldwide, false killer whales (Pseudorca crassidens) are infrequently encountered, yet long-term studies have shown strong site fidelity as well as long-term associations among individuals in several locations. Detailed studies of this species have primarily been conducted around tropical oceanic islands or in the subtropi�cal sout...

Endangered Southern Resident killer whales (Orcinus orca) are fish-eaters that preferentially prey on adult Chinook salmon (Oncorhynchus tshawytscha). Despite being salmon specialists, individuals from all three killer whale pods (J, K, L) have been observed harassing and killing porpoises (family Phocoenidae) without consuming them. Retrospectivel...

Mating and sociosexual behaviors of cetaceans are challenging to study in nature because most species spend only brief periods of time at the surface and most copulation and courtship occurs underwater. Recent advancements in technology have enabled a new perspective on these behaviors. Drones, or unoccupied aerial systems, have revolutionized stud...

The presence of distinct social groups within an animal population can result in heterogeneity in many aspects of its life history and ecology. The ability to accurately assess social group membership increases with the number of times individuals are identified, but obtaining sufficient sightings of rarely encountered species can be difficult. Thr...

Researchers can investigate many aspects of animal ecology through noninvasive photo–identification. Photo–identification is becoming more efficient as matching individuals between photos is increasingly automated. However, the convolutional neural network models that have facilitated this change need many training images to generalize well. As a r...

Background Animal-borne telemetry instruments (tags) have greatly advanced our understanding of species that are challenging to observe. Recently, non-recoverable instruments attached to cetaceans have increased in use, but these devices have limitations in data transmission bandwidth. We analyze trade-offs in the longevity, resolution, and continu...

The global expansion of mariculture offers numerous potential benefits but may also pose a threat to wildlife populations. There is currently only one commercial finfish mariculture facility in Hawaiʻi, a nearshore kanpachi ( Seriola rivoliana ) farm off the west coast of Hawaiʻi Island. This farm lies within the range of several resident odontocet...

In this assessment we incorporated published and unpublished information to delineate and score Biologically Important Areas (BIAs) for cetaceans in the Hawaiʻi region following standardized criteria. Twenty-six cetacean species have been documented in Hawaiʻi. Eleven odontocete species have distinct small populations resident to one or more island...

Successful conservation and management of marine top predators rely on detailed documentation of spatiotemporal behavior. For cetacean species, this information is key to defining stocks, habitat use, and mitigating harmful interactions. Research focused on this goal is employing methodologies such as visual observations, tag data, and passive acou...

The deep sea is the largest ecosystem on Earth, yet little is known about the processes driving patterns of genetic diversity in its inhabitants. Here, we investigated the macro- and microevolutionary processes shaping genomic population structure and diversity in two poorly understood, globally distributed, deep-sea predators: Cuvier’s beaked whal...

Adults of many free‐ranging delphinid species cannot be reliably sexed at sea. Sexually mature, known‐sex adult short‐finned pilot, pygmy killer, melon‐headed, and false killer whales were profiled from at‐sea photos to assess proportional fin and body dimorphism. Males of all four species had larger dorsal fins proportional to anterior body length...

Background Animal-borne telemetry instruments (tags) have greatly advanced our understanding of species that are challenging to observe. Recently, non-recoverable instruments attached to cetaceans have increased in use, but these devices have limitations in data transmission bandwidth. We analyze trade-offs in the longevity, resolution, and continu...

Rough‐toothed dolphins (Steno bredanensis) have a global tropical and subtropical distribution with oceanic, neritic, and island‐associated populations. To inform conservation and management for this species, we used sequences from the mtDNA control region (n = 360), mitogenomes (n = 19), and six nuclear introns (n = 35) to provide multiple lines o...

Passive acoustic monitoring (PAM) has proven a powerful tool for the study of marine mammals, allowing for documentation of biologically relevant factors such as movement patterns or animal behaviors while remaining largely non-invasive and cost effective. From 2008–2019, a set of PAM recordings covering the frequency band of most toothed whale (od...

Assessing the patterns of wildlife attendance to specific areas is relevant across many fundamental and applied ecological studies, particularly when animals are at risk of being exposed to stressors within or outside the boundaries of those areas. Marine mammals are increasingly being exposed to human activities that may cause behavioral and physi...

Abstract available in English, Spanish and Portuguese. The deep sea has been described as the last major ecological frontier, as much of its biodiversity is yet to be discovered and described. Beaked whales (ziphiids) are among the most visible inhabitants of the deep sea, due to their large size and worldwide distribution, and their taxonomic div...

Abstract available in English, Spanish and Portuguese. The deep sea has been described as the last major ecological frontier, as much of its biodiversity is yet to be discovered and described. Beaked whales (ziphiids) are among the most visible inhabitants of the deep sea, due to their large size and worldwide distribution, and their taxonomic dive...

Dwarf sperm whales (Kogia sima) have been studied rarely at sea. We used photo‐identification, boat‐ and drone‐based behavioral observations, and citizen science photo contributions to examine site fidelity, spatial use, and behavior in Hawaiʻi. Sighting rates were highest in island slope (500–1,000 m) waters. Over 40% of photo‐identified individua...

Runs of homozygosity (ROH) occur when offspring inherit haplotypes that are identical by descent from each parent. Length distributions of ROH are informative about population history; specifically, the probability of inbreeding mediated by mating system and/or population demography. Here, we investigate whether variation in killer whale (Orcinus o...

False killer whales (Pseudorca crassidens) depredate bait and catch in the Hawai‘i‐based deep‐set longline fishery, and as a result, this species is hooked or entangled more than any other cetacean in this fishery. We analyzed data collected by fisheries observers and from satellite‐linked transmitters deployed on false killer whales to identify pa...

Runs of homozygosity (ROH) occur when offspring inherit haplotypes that are identical by descent from each parent. Length distributions of ROH are informative about population history; specifically the probability of inbreeding mediated by mating system and/or population demography. Here, we investigate whether variation in killer whale (Orcinus or...

Species conservation relies on understanding population demographics, yet this information is lacking for many species and populations. Four stocks of common bottlenose dolphins Tursiops truncatus inhabiting the waters surrounding the main Hawaiian Islands (USA) are exposed to anthropogenic disturbances including fisheries interactions, tourism, na...

Observational studies describe rough‐toothed dolphins (Steno bredanensis) actively foraging during the day on epipelagic species. Using data from depth‐transmitting satellite tags deployed on nine individuals off Kauaʻi, we investigated diving behavior and the effects of lunar phase and solar light levels on vertical movements. Overall, tagged roug...

Understanding diet is critical for conservation of endangered predators. Southern Resident killer whales (SRKW) (Orcinus orca) are an endangered population occurring primarily along the outer coast and inland waters of Washington and British Columbia. Insufficient prey has been identified as a factor limiting their recovery, so a clear understandin...

Incidental bycatch in fisheries is a pressing conservation issue for marine mammal populations across the globe. However, the ability to detect and therefore mitigate this issue is challenging for several reasons. Fishermen are unlikely to voluntarily report bycatch due to fear of penalization or apathy towards it. While fisheries observer programs...

Studies of the social behavior of Cuvier's beaked whales (Ziphius cavirostris) are challenging because of their deep‐water habitat usually far from shore and the limited time they spend at the surface. The sociality of these deepest diving mammals is of interest, however, especially for our understanding of how social systems evolve in extreme habi...

Harbor porpoise in the North Pacific are found in coastal waters from southern California to Japan, but population structure is poorly known outside of a few local areas. We used multiplexed amplicon sequencing of 292 loci and genotyped clusters of SNPs as microhaplotypes (N=271 samples) in addition to mtDNA sequence data (N=413 samples), to examin...

Pelagic false killer whales (Pseudorca crassidens) are killed or seriously injured in the Hawai‘i-based deep-set longline fishery more than any other cetacean, with bycatch regularly exceeding allowable levels. Telemetry data from five satellite-tagged whales (from three groups) and longline logbook entries (4182 sets) from the Hawai‘i-based longli...

In Hawaiian waters fishermen use the association between pantropical spotted dolphins (Stenella attenuata) and yellowfin tuna (Thunnus albacares) to catch tuna. Targeting fishing effort around or in spotted dolphin groups has the potential to lead to bycatch, and anecdotal reports of hooking dolphins exist. We recorded information on fishing vessel...

Skin-associated microorganisms have been shown to play a role in immune function and disease of humans, but are understudied in marine mammals, a diverse animal group that serve as sentinels of ocean health. We examined the microbiota associated with 75 epidermal samples opportunistically collected from nine species within four marine mammal famili...

False killer whales are long-lived, slow to mature, apex predators, and therefore susceptible to bioaccumulation of persistent organic pollutants (POPs). Hawaiian waters are home to three distinct populations: pelagic; Northwestern Hawaiian Islands (NWHI) insular; and main Hawaiian Islands (MHI) insular. Following a precipitous decline over recent...

Spinner dolphins Stenella longirostris longirostris in Hawai‘i exhibit a predictable diurnal behavioral pattern which makes them vulnerable to human disturbance: feeding at night in offshore waters and resting during daytime in bays. There is concern that human activity, such as swimming with and viewing wild dolphins from vessels, is altering thei...

Given the difficulties and costs often associated with surveying cetaceans, enlisting members of the public to collect data offers a promising alternative approach. Comparison of cetacean 'participatory science' (also known as 'citizen science') data with data collected during traditional scientific studies helps reveal the strengths and weaknesses...

Cuvier’s beaked whales Ziphius cavirostris are wide-ranging, deep-diving cetaceans that are particularly sensitive to anthropogenic noise. Current stock assessments assume a single population in the western North Atlantic Ocean, but knowledge of the residency patterns and distribution of the species is currently lacking in the region. Here we descr...

Animal-borne electronic instruments (tags) are valuable tools for collecting information on cetacean physiology, behaviour and ecology, and for enhancing conservation and management policies for cetacean populations. Tags allow researchers to track the movement patterns, habitat use and other aspects of the behaviour of animals that are otherwise d...

Most mammals exhibit natal dispersal of one or both sexes, a behavior that likely evolved in part to reduce the chances of breeding with close relatives. When natal social group fidelity of both sexes has been documented, the risk of inbreeding is reduced by breeding among rather than within social groups. We investigated mating patterns in an enda...

False killer whales (Pseudorca crassidens) are long-lived, slow to mature, apex predators, and therefore susceptible to bioaccumulation of persistent organic pollutants (POPs). Hawaiian waters are home to three distinct populations/stocks: pelagic, Northwestern Hawaiian Islands (NWHI), and main Hawaiian Islands (MHI). The MHI stock comprises at lea...

While beaked whales are the poorest-known family of cetaceans overall, the behavior and ecology of two species of beaked whales, Cuvier’s (Ziphius cavirostris) and Blainville’s (Mesoplodon densirostris), have been studied extensively for more than 15 years in multiple areas around the world. This research was largely initiated as a result of the su...

Reconstruction of the demographic and evolutionary history of populations assuming a consensus tree‐like relationship can mask more complex scenarios, which are prevalent in nature. An emerging genomic toolset, which has been most comprehensively harnessed in the reconstruction of human evolutionary history, enables molecular ecologists to elucidat...

Genomic phylogeography plays an important role in describing evolutionary processes and their geographic, ecological, or cultural drivers. These drivers are often poorly understood in marine environments, which have fewer obvious barriers to mixing than terrestrial environments. Taxonomic uncertainty of some taxa (e.g. cetaceans), due to the diffic...

Aim Fisheries bycatch is a major threat to populations of protected species such as marine mammals, seabirds and sea turtles, and static management approaches are often unsuccessful in mitigating bycatch of these highly mobile species. Combining species distribution models (SDMs) with oceanographic data has been proposed as a means of predicting wh...

Cuvier's beaked whales exhibit exceptionally long and deep foraging dives. The species is little studied due to their deep-water, offshore distribution and limited time spent at the surface. We used LIMPET satellite tags to study the diving behaviour of Cuvier's beaked whales off Cape Hatteras, North Carolina from 2014 to 2016. We deployed 11 tags,...

The misidentification of species and populations is a hindrance to effective cetacean management. We devised a method of species identification using 10 fin and body measurements obtainable from at‐sea photographs, and demonstrated its ability to distinguish four species of Hawaiian “blackfish”: pygmy killer, melon‐headed, short‐finned pilot, and f...

Mass stranding events (MSEs) of beaked whales (BWs) were extremely rare prior to the 1960s but increased markedly after the development of naval mid-frequency active sonar (MFAS). The temporal and spatial associations between atypical BW MSEs and naval exercises were first observed in the Canary Islands, Spain, in the mid-1980s. Further research on...

Until the 1990s, beaked whales were one of the least understood groups of large mammals. Information on northern bottlenose whales (Hyperoodon ampullatus) and Baird’s beaked whales (Berardius bairdii) was available from data collected during whaling, however, little information existed on the smaller species other than occasional data gleaned from...

Reconstruction of the demographic and evolutionary history of populations assuming a consensus tree-like relationship can mask more complex scenarios, which are prevalent in nature. An emerging genomic toolset, which has been most comprehensively harnessed in the reconstruction of human evolutionary history, enables molecular ecologists to elucidat...

In many social species, acoustic dialects are used to differentiate among social groups within a local population. These acoustic dialects and their corresponding social groups are often related to distinct foraging behaviors or spatial movement patterns, and it is possible that vocal repertoire variability is one of the proximate mechanisms drivin...

Short-finned pilot whales (Globicephala macrorhynchus) depredate pelagic longlines along the shelf break of the Mid-Atlantic Bight. The mortality and serious injury of short-finned pilot whales in the U.S. pelagic longline fishery recently exceeded Potential Biological Removal levels defined under the U.S. Marine Mammal Protection Act, and bycatch...

Recent exploration into the interactions and relationship between hosts and their microbiota has revealed a connection between many aspects of the host's biology, health and associated microorganisms. Whereas amplicon sequencing has traditionally been used to characterise the microbiome, the increasing number of published population genomics datase...