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September 2003 - present
Publications
Publications (179)
Coral reefs are threatened globally by compounding stressors of accelerating climate change and deteriorating water quality. Water quality plays a central role in coral reef health. Yet, accurately quantifying water quality at large scales meaningful for monitoring impacts on coral health remains a challenge due to the complex optical conditions ty...
Accurate retrieval of canopy nutrient content has been made possible using visible-to-shortwave infrared (VSWIR) imaging spectroscopy. While this strategy has often been tested on closed green plant canopies, little is known about how nutrient content estimates perform when applied to pixels not dominated by photosynthetic vegetation (PV). In such...
In Hawaiʻi, native macroalgae or “limu” are of ecological, cultural, and economic value. Invasive algae threaten native macroalgae and coral, which serve a key role in the reef ecosystem. Spectroscopy can be a valuable tool for species discrimination, while simultaneously providing insight into chemical processes occurring within photosynthetic org...
Corals are habitat-forming organisms on tropical and sub-tropical reefs, often displaying diverse phenotypic behaviors that challenge field-based monitoring and assessment efforts. Symbiont chlorophyll (Chl) is a long-recognized indicator of intra- and inter-specific variation in coral’s response to environmental variability and stress, but the qua...
Coral reefs are in decline worldwide, making it increasingly important to promote coral recruitment in new or degraded habitat. Coral reef morphology—the structural form of reef substrate—affects many aspects of reef function, yet the effect of reef morphology on coral recruitment is not well understood. We used structure-from-motion photogrammetry...
Accurate monitoring of crop nitrogen (N) across spatial and temporal scales is a fundamental goal for meeting precision agriculture requirements and promoting sustainable agriculture. The planning and implementation of several spaceborne imaging spectroscopy missions in recent years holds great promise for such large scale and intricate monitoring....
Vegetation classifications on large geographic scales are necessary to inform conservation decisions and monitor keystone, invasive, and endangered species. These classifications are often effectively achieved by applying models to imaging spectroscopy, a type of remote sensing data, but such undertakings are often limited in spatial extent. Here w...
Vegetation classifications on large geographic scales are necessary to inform conservation decisions and monitor keystone, invasive, and endangered species. These classifications are often effectively achieved by applying models to imaging spectroscopy, a type of remote sensing, data, but such undertakings are often limited in spatial extent. Here...
Plant pathogens are increasingly compromising forest health, with impacts to the ecological, economic, and cultural goods and services these global forests provide. One response to these threats is the identification of disease resistance in host trees, which with conventional methods can take years or even decades to achieve. Remote sensing method...
Imaging spectroscopy is a burgeoning tool for understanding ecosystem functioning on large spatial scales, yet the application of this technology to assess intra-specific trait variation across environmental gradients has been poorly tested. Selection of specific genotypes via environmental filtering plays an important role in driving trait variati...
Although tropical forests differ substantially in form and function, they are often represented as a single biome in global change models, hindering understanding of how different tropical forests will respond to environmental change. The response of the tropical forest biome to environmental change is strongly influenced by forest type. Forest typ...
Tropical forests are some of the most biodiverse ecosystems in the world, yet their functioning is threatened by anthropogenic disturbances and climate change. Global actions to conserve tropical forests could be enhanced by having local knowledge on the forestsʼ functional diversity and functional redundancy as proxies for their capacity to respon...
Assessing the impacts of anthropogenic degradation and climate change on global carbon cycling is hindered by a lack of clear, flexible and easy‐to‐use productivity models along with scarce trait and productivity data for parameterizing and testing those models. We provide a simple solution: a mechanistic framework (RS‐CFM) that combines remotely‐s...
Significance
Corals exhibit highly variable responses to marine heat waves as well as to local biological and ecological circumstances that moderate them across reef seascapes. This variability makes identifying refugia—reefs possessing conditions that increase coral resilience—nearly impossible with traditional surveys. We developed and applied an...
The global decline of coral reefs urgently requires scalable colony‐level data about phenotypic variation to improve coral conservation and management. To address this, we leveraged historical bleaching phenotypes, airborne imaging spectroscopy, and recurrent temperature stress to map coral species composition and thermal tolerance across four foca...
Coral reefs are threatened by climate change, overfishing, and pollution. Artificial reefs may provide havens for corals, both to escape warming surface waters and to assist in the geographic migration of corals to more habitable natural reef conditions of the future. The largest artificial reefs have been generated by nearly 2000 shipwrecks around...
Native forests of Hawaiʻi Island are experiencing an ecological crisis in the form of Rapid ʻŌhiʻa Death (ROD), a recently characterized disease caused by two fungal pathogens in the genus Ceratocystis. Since approximately 2010, this disease has caused extensive mortality of Hawaiʻi's keystone endemic tree, known as ʻōhiʻa (Metrosideros polymorpha)...
Severe droughts are predicted to become more frequent in the future, and the consequences of such droughts on forests can be dramatic, resulting in massive tree mortality, rapid change in forest structure and composition, and substantially increased risk of catastrophic fire. Forest managers have tools at their disposal to try to mitigate these eff...
Metrosideros polymorpha Gaud. (‘ōhi‘a) is the most abundant native forest tree in Hawai‘i and a keystone species of cultural, ecological, and economic importance. ‘Ōhi‘a forests, particularly on Hawaiʻi Island, are being severely impacted by Rapid ‘Ōhi‘a Death (ROD), which is caused by the fungal pathogens Ceratocystis lukuohia and C. huliohia. ROD...
Between 2012 and 2016, California suffered one of the most severe droughts on record. During this period Sequoiadendron giganteum (giant sequoias) in the Sequoia and Kings Canyon National Parks (SEKI), California, USA experienced canopy water content (CWC) loss, unprecedented foliage senescence, and, in a few cases, death. We present an assessment...
Coral reefs are undergoing changes caused by coastal development, resource use, and climate change. The extent and rate of reef change demand robust and spatially explicit monitoring to support management and conservation decision-making. We developed and demonstrated an airborne-assisted approach to design and upscale field surveys of reef fish ov...
National Academies' Decadal Survey, Thriving on Our Changing Planet, recommended Surface Biology and Geology (SBG) as a "Designated Targeted Observable" (DO). The SBG DO is based on the need for capabilities to acquire global, high spatial resolution, visible to shortwave infrared (VSWIR; 380-2500 nm; ~30 m pixel resolution) hyperspectral (imaging...
Reef rugosity, a metric of three-dimensional habitat complexity, is a central determinant of reef condition and multi-trophic occupancy including corals, fishes and invertebrates. As a result, spatially explicit information on reef rugosity is needed for conservation and management activities ranging from fisheries to coral protection and restorati...
Abstract Plant defense chemistry is often hypothesized to drive ecological and evolutionary success in diverse tropical forests, yet detailed characterizations of plant secondary metabolites in tropical plants are logistically challenging. Here, we explore a new integrative approach that combines visible‐to‐shortwave infrared (VSWIR) spectral refle...
Tropical forest ecosystems are undergoing rapid transformation as a result of changing environmental conditions and direct human impacts. However, we cannot adequately understand, monitor or simulate tropical ecosystem responses to environmental changes without capturing the high diversity of plant functional characteristics in the species-rich tro...
Significance
Coral reefs are changing at unprecedented rates, and the majority of reefs are undergoing widespread losses in live coral cover. Management and policy development efforts focused on conserving and restoring coral reefs are hampered by a lack of geographically consistent and actionable high-resolution information on the specific locatio...
Forests are integral to global carbon cycling but are threatened by anthropogenic degradation and climate change. Assessing this global threat has been hindered by a lack of clear, flexible, and easy-to-use productivity models along with a lack of functional trait and productivity data for parameterizing and testing those models. Current productivi...
Tropical forest ecosystems are undergoing rapid transformation as a result of changing environmental conditions and direct human impacts. However, we cannot adequately understand, monitor or simulate tropical ecosystem responses to environ ⁎ mental changes without capturing the high diversity of plant functional characteristics in the species-rich...
We present a new method for the detection of coral bleaching using satellite time-series data. While the detection of coral bleaching from satellite imagery is difficult due to the low signal-to-noise ratio of benthic reflectance, we overcame this difficulty using three approaches: (1) specialized pre-processing developed for Planet Dove satellites...
Tropical biomes are the most diverse plant communities on Earth, and quantifying this diversity at large spatial scales is vital for many purposes. As macroecological approaches proliferate, the taxonomic uncertainties in species occurrence data are easily neglected and can lead to spurious findings in downstream analyses. Here, we argue that techn...
The carbon gain in restored logged forest
There is currently great interest in the capacity of global forest to store carbon and hence contribute to the mitigation of climate change in the coming decades. In a study of Southeast Asian tropical forest, Philipson et al. show that active restoration of logged forests generates higher rates of carbon a...
Leaf reflectance spectra have been increasingly used to assess plant diversity. However, we do not yet understand how spectra vary across the tree of life or how the evolution of leaf traits affects the differentiation of spectra among species and lineages.
Here we describe a framework that integrates spectra with phylogenies and apply it to a glob...
Haffer’s (Science 165: 131–137, 1969) Pleistocene refuge theory has provided motivation for 50 years of investigation into the connections between climate, biome dynamics, and neotropical speciation, although aspects of the original theory are not supported by subsequent studies. Recent advances in paleoclimatology suggest the need for reevaluating...
Deconstructing functional trait variation and co-variation across a wide range of environmental conditions is necessary to increase the mechanistic understanding of community assembly processes and improve current parameterization of dynamic vegetation models. Here, we present a study that deconstructs leaf trait variation and co-variation into wit...
Foliar trait adaptation to sun and shade has been extensively studied in the context of photosynthetic performance of plants, focusing on nitrogen allocation, light capture and use via chlorophyll pigments and leaf morphology; however, less is known about the potential sun-shade dichotomy of other functionally important foliar traits. In this study...
Spatially continuous data on functional diversity will improve our ability to predict global change impacts on ecosystem properties. We applied methods that combine imaging spectroscopy and foliar traits to estimate remotely sensed functional diversity in tropical forests across an Amazon-to-Andes elevation gradient (215 to 3537 m). We evaluated th...
1.The network of minor veins of angiosperm leaves may include loops (reticulation). Variation in network architecture has been hypothesized to have hydraulic and also structural and defensive functions. 2.We measured venation network trait space in eight dimensions for 136 biomass-dominant angiosperm tree species along a 3,300 m elevation gradient...
Tropical forest leaf albedo (reflectance) greatly impacts how much energy the planet absorbs; however; little is known about how it might be impacted by climate change. Here, we measure leaf traits and leaf albedo at ten 1-ha plots along a 3,200-m elevation gradient in Peru. Leaf mass per area (LMA) decreased with warmer temperatures along the elev...
Rapid ‘Ōhi‘a Death (ROD) is a disease aggressively killing large numbers of Metrosideros polymorpha (‘ōhi‘a), a native keystone tree species on Hawaii Island. This loss threatens to deeply alter the biological make-up of this unique island ecosystem. Spatially explicit information about the present and past advancement of the disease is essential f...
Pathogenic invasions are a major source of change in both agricultural and natural ecosystems. In forests, fungal pathogens can kill habitat-generating plant species such as canopy trees, but methods for remote detection, mapping and monitoring of such outbreaks are poorly developed. Two novel species of the fungal genus Ceratocystis have spread ra...
Trade-offs among plant functional traits indicate diversity in plant strategies of growth and survival. The leaf economics spectrum (LES) reflects a trade-off between short-term carbon gain and long-term leaf persistence. A related trade-off, between foliar growth and anti-herbivore defense, occurs among plants growing in contrasting resource regim...
Hotter droughts are becoming more common as climate change progresses, and they may already have caused instances of forest dieback on all forested continents. Learning from hotter droughts, including where on the landscape forests are more or less vulnerable to these events, is critical to help resource managers proactively prepare for the future....
Drought is expected to become an increasingly important stressor on forests globally, and understanding the physiological mechanisms driving tree drought response is essential for developing effective mitigation and conservation measures for these ecosystems. In 2014, during California's 2012-2016 "hotter" drought in which higher temperatures exace...
The network of minor veins of angiosperm leaves may include loops (reticulation). Variation in network architecture has been hypothesized to have hydraulic and also structural and defensive functions.
We measured venation network trait space in eight dimensions for 136 biomass‐dominant angiosperm tree species along a 3,300 m elevation gradient in s...
Spatial information on forest functional composition is needed to inform management and conservation efforts, yet this information is lacking, particularly in tropical regions. Canopy foliar traits underpin the functional biodiversity of forests, and have been shown to be remotely measurable using airborne 350–2510 nm imaging spectrometers. We used...
Forest carbon stocks in rapidly developing tropical regions are highly heterogeneous, which challenges efforts to develop spatially-explicit conservation actions. In addition to field-based biodiversity information, mapping of carbon stocks can greatly accelerate the identification, protection and recovery of forests deemed to be of high conservati...
California experienced severe drought from 2012 to 2016, and there were visible changes in the forest canopy throughout the State. In 2014, unprecedented foliage dieback was recorded in giant sequoia (Sequoiadendron giganteum) trees in Sequoia National Park, in the southern California Sierra Nevada mountains. Although visible changes in sequoia can...
Recent drought (2012-2016) caused unprecedented foliage dieback in giant sequoias (Sequoiadendron giganteum), a species endemic to the western slope of the southern Sierra Nevada in central California. As part of an effort to understand and map sequoia response to droughts, we studied the patterns of remotely sensed canopy water content (CWC), both...
High resolution spectroscopy can be used to measure leaf chemical and structural traits. Such leaf traits are often highly correlated to other traits, such as photosynthesis through the, leaf economics spectrum. We measured VNIR (visible – near infrared) leaf reflectance (400-1075nm) of sunlit and shaded leaves in ~150 dominant species across ten 1...
Aim
Tropical elevation gradients are natural laboratories to assess how changing climate can influence tropical forests. However, there is a need for theory and integrated data collection to scale from traits to ecosystems. We assess predictions of a novel trait‐based scaling theory, including whether observed shifts in forest traits across a broad...
Ongoing tropical deforestation and forest degradation, combined with climate change, call for improved forest functional and biological diversity mapping to support increasingly tactical decision-making for conservation action. We combine a new map of forest canopy functional and biological composition with extensive protected area and indigenous l...
One of the major challenges in ecology is to understand how ecosystems respond to changes in environmental conditions, and how taxonomic and functional diversity mediate these changes. In this study, we use a trait-spectra and individual-based model, to analyse variation in forest primary productivity along a 3.3 km elevation gradient in the Amazon...
Fig. S1 Correlation among climate variables for the study sites in Peru.
Fig. S2 Correlation among climate variables among study sites used in the global analysis.
Fig. S3 Differences in leaf water repellency for species occurring at two neighboring sites.
Fig. S4 Partitioning of sources of variance for leaf water repellency.
Fig. S5 Relationsh...
Coral reefs of the Spratly archipelago in the South China Sea are undergoing rapid transformation through military base and outpost development, destructive fishing practices and other factors. Despite increasing pressure on the ecologically unique reefs throughout this region, limited direct access to them has made it difficult to monitor reef cov...
The carbon isotopic composition of plant leaf wax biomarkers is commonly used to reconstruct paleoenvironmental conditions. Adding to the limited calibration information available for modern tropical forests, we analyzed plant leaf and leaf wax carbon isotopic compositions in forest canopy trees across a highly biodiverse, 3.3 km elevation gradient...
Airborne spectroscopy for forest traits
The development of conservation priorities in the tropics is often hampered by the sparseness of ground data on biological diversity and the relative crudeness of larger-scale remote sensing data. Asner et al. developed airborne instrumentation to make large-scale maps of forest functional diversity across 72...