Robert Penn Guralnick

University of Florida | UF · Department of Natural History

Despite experimental and observational studies demonstrating that biodiversity enhances primary productivity, the best metric for predicting productivity at broad geographic extents—functional trait diversity, phylogenetic diversity, or species richness—remains unknown. Using >1.8 million tree measurements from across eastern US forests, we quantif...

Recent work has shown the decline of insect abundance, diversity and biomass, with potential implications for ecosystem services. These declines are especially pronounced in regions with high human activity, and urbanization is emerging as a significant contributing factor. However, the scale of these declines and the traits that determine variatio...

Global climate change has been identified as a potential driver of observed insect declines, yet in many regions, there are critical data gaps that make it difficult to assess how communities are responding to climate change. Poleward regions are of particular interest because warming is most rapid while biodiversity data are most sparse. Building...

Premise Among the slowest steps in the digitization of natural history collections is converting imaged labels into digital text. We present here a working solution to overcome this long‐recognized efficiency bottleneck that leverages synergies between community science efforts and machine learning approaches. Methods We present two new semi‐autom...

Urbanization in temperate climates often advances the beginning and peak of biological events due to multiple factors, especially urban heat islands. However, the effect of urbanization on insect phenology remains understudied in more tropical areas, where temperature may be a weaker phenological cue. We surveyed moths across an urban gradient in a...

Mountains and islands are both model systems for studying the biogeography of diversification and population fragmentation. Aotearoa is an excellent location to study both phenomena due to alpine emergence and oceanic separation. While it would be expected that separation across Te Moana o Raukawa and elevation gradients are major barriers to gene...

Premise One of the slowest steps in digitizing natural history collections is converting labels associated with specimens into a digital data record usable for collections management and research. Here, we address how herbarium specimen labels can be converted into digital data records via extraction into standardized Darwin Core fields. Methods W...

The New World warblers (Parulidae) are a model group for ecological and evolutionary analyses. However, current phylogenetic relationships across this family are based upon few loci. Here we use ultraconserved elements (UCEs) to estimate a rigorous species-level phylogeny for the family. As is true for many groups, high-quality tissues were unavail...

Climate change is already leaving a broad footprint of impacts on biodiversity, from an individual caterpillar emerging earlier in spring to an entire plant community migrating poleward. Despite the various modes of how species are on the move, we primarily document shifting species along only one gradient (e.g., latitude or phenology) and along on...

Climatic change is dramatically altering phenology but generalities regarding tempo and mode of response remain limited. Here we present a general model framework incorporating spring temperature, velocity of spring warming, and species’ thermal requirements for predicting phenological response to warming. A key prediction of this framework is that...

Climatic change is dramatically altering phenology but generalities regarding tempo and mode of response remain limited. Here we present a general model framework incorporating spring temperature, velocity of spring warming, and species’ thermal requirements for predicting phenological response to warming. A key prediction of this framework is that...

How landscape composition and configuration impact the distribution of multi-vector and multi-host mosquito vector-borne disease systems, such as West Nile virus (WNV), remains challenging because of complex habitat and resource requirements by hosts and vectors that affect transmission opportunities. We examined correlations between landscape comp...

Insect coloration has evolved in response to multiple pressures, and in Odonata (dragonflies and damselflies) a body of work supports a role of wing color in a variety of visual signals and potentially in thermoregulation. Previous efforts have focused primarily on melanistic coloration even though wings are often multicolored, and there has yet to...

Biological nitrogen fixation is a fundamental part of ecosystem functioning. Anthropogenic nitrogen deposition and climate change may, however, limit the competitive advantage of nitrogen-fixing plants, leading to reduced relative diversity of nitrogen-fixing plants. Yet, assessments of changes of nitrogen-fixing plant long-term community diversity...

Plant phenology plays a fundamental role in shaping ecosystems, and global change-induced shifts in phenology have cascading impacts on species interactions and ecosystem structure and function. Detailed, high-quality observations of when plants undergo seasonal transitions such as leaf-out, flowering, and fruiting are critical for tracking causes...

Although the frequency of ancient hybridization across the Tree of Life is greater than previously thought, little work has been devoted to uncovering the extent, timeline, and geographic and ecological context of ancient hybridization. Using an expansive new dataset of nuclear and chloroplast DNA sequences, we conducted a multifaceted phylogenomic...

Nitrogen (N)-fixing symbiosis is critical to terrestrial ecosystems, yet possession of this trait is known for few plant species. Broader presence of the symbiosis is often indirectly determined by phylogenetic relatedness to taxa investigated via manipulative experiments. This data gap may ultimately underestimate phylogenetic, spatial, and tempor...

Tetrapods (amphibians, reptiles, birds, and mammals) are model systems for global biodiversity science, but continuing data gaps, limited data standardisation, and ongoing flux in taxonomic nomenclature constrain integrative research on this group and potentially cause biased inference. We combined and harmonised taxonomic, spatial, phylogenetic, a...

Insect coloration has evolved in response to multiple pressures, and in Odonata (dragonflies and damselflies) a body of work supports a role of wing color in a variety of visual signals and potentially in thermoregulation. Previous efforts have focused primarily on melanistic coloration even though wings are often multicolored, and there has yet to...

Insects often exhibit irruptive population dynamics determined by environmental conditions. We examine if populations of the Culex tarsalis mosquito, a West Nile virus (WNV) vector, fluctuate synchronously over broad spatial extents and multiple timescales and whether climate drives synchrony in Cx. tarsalis, especially at annual timescales, due to...

Root nodule symbiosis (RNS) is a complex trait that enables plants to access atmospheric nitrogen converted into usable forms through a mutualistic relationship with soil bacteria. Pinpointing the evolutionary origins of RNS is critical for understanding its genetic basis, but building this evolutionary context is complicated by data limitations an...

Astragalus (Fabaceae) is astoundingly diverse in temperate, cold arid regions of Earth, positioning this group as a model clade for investigating the distribution of plant diversity in the face of environmental challenges. Here, we identify the spatial distribution of diversity and endemism in Astragalus using species distribution models for 752 sp...

Elaborate traits evolve via intense selective pressure, often overpowering ecological constraints. Hindwing tails that thwart bat attack have repeatedly originated in moon moths (Saturniidae), with longer tails having more pronounced anti-predator effect. Understanding the relative evolutionary balance between predation pressure and possible limiti...

Raw data and R-code for the research approach on phylogenetic multiple imputation of natural history traits for tetrapod species. In brief, the code computes the phylogenetic filters, reproduces the grid search procedure to tune XGBoost hyperparameters; compute phylogenetic multiple imputations for traits related to body length, body mass, activity...

Please, access the file through its DOI. Version 1.0.0 (19 April 2024). TetrapodTraits, the full phylogenetically coherent database we developed, is being made publicly available to support a range of research applications in ecology, evolution, and conservation and to help minimise the impacts of biassed data in this model system. The database inc...

Aim Quantifying the phylogenetic diversity of temperate trees is essential for understanding the processes that have shaped the modern distribution of temperate broadleaf forest and other major forest biomes. Here, we focus on Fagales, an iconic member of forests worldwide, to uncover global diversity and endemism patterns and investigate the distr...

Recent reports of insect declines have raised concerns about the potential for concomitant losses to ecosystem processes. However, understanding the causes and consequences of insect declines is challenging, especially given the data deficiencies for most species. Needed are approaches that can help quantify the magnitude and potential causes of de...

Continued and rapid development of urban environments presents many challenges to organisms living in and around cities. Insects are among the most abundant and diverse class of animals but surprisingly little is known about how most species respond to urbanisation across clades with varying life histories, especially in the subtropics and tropics....

Insects often exhibit irruptive population dynamics determined by environmental conditions. Here, we examine if populations of the Culex tarsalis mosquito, an important vector for West Nile virus (WNV), fluctuate synchronously over broad spatial extents and multiple timescales. We also examine whether climate drives synchrony in Cx. tarsalis , espe...

Premise Astragalus (Fabaceae), with more than 3000 species, represents a globally successful radiation of morphologically highly similar species predominant across the northern hemisphere. It has attracted attention from systematists and biogeographers, who have asked what factors might be behind the extraordinary diversity of this important arid‐a...

One of the slowest steps in digitizing natural history collections is converting labels associated with specimens into a digital data record usable for collections management and research. Recent work has shown a path for semi-automated approaches that can find labels, OCR them and convert the raw OCR text into digital data records. Here we address...

Land use and land cover (LULC) change has been identified as an important driver of emerging mosquito-borne zoonotic diseases. However, studies are often limited to individual vector species, despite the potential for interspecific variation in vector competency within mosquito assemblages. This variation can affect transmission hazard, particularl...

Seasonal movement strategies are poorly understood for most animals, impeding broader understanding of processes underlying migration and limiting practical conservation needs. Here we develop and implement a framework for integrating multiple sources of endogenous markers, in particular stable hydrogen isotope data, that capture and scale dynamics...

Thermal performance curves (TPCs) depict variation in vital rates in response to temperature and have been an important tool to understand ecological and evolutionary constraints on the thermal sensitivity of ectotherms. TPCs allow for the calculation of indicators of thermal tolerance, such as minimum, optimum, and maximum temperatures that allow...

Urbanization is quickly becoming one of the most important drivers of global environmental change as human population and economic development rapidly increase. However, the effects of urbanization on plant phenology, especially leaf senescence and the length of growing season across large spatial scales, are still understudied. Previous work sugge...

Premise Plant trait data are essential for quantifying biodiversity and function across Earth, but these data are challenging to acquire for large studies. Diverse strategies are needed, including the liberation of heritage data locked within specialist literature such as floras and taxonomic monographs. Here we report FloraTraiter, a novel approac...

The macroevolutionary processes that have shaped biodiversity across the temperate realm remain poorly understood and may have resulted from evolutionary dynamics related to diversification rates, dispersal rates, and colonization times, closely coupled with Cenozoic climate change. We integrated phylogenomic, environmental ordination, and macroevo...

Guralnick, Robert and Morris, Robert A. (2024) Biodiversity Informatics. In: Scheiner Samuel M. (eds.) Encyclopedia of Biodiversity 3rd edition, vol. 5, pp. 308–313. Oxford: Elsevier.

iNaturalist has the potential to be an extremely rich source of organismal occurrence data. Launched in 2008, it now contains over 150 million uploaded observations as of May 2023. Based on the findings of a limited number of past studies assessing the taxonomic accuracy of participatory science-driven sources of occurrence data such as iNaturalist...

Astragalus (Fabaceae) is astoundingly diverse in temperate, cold arid regions of Earth, positioning this group as a model clade for investigating the distribution of plant diversity in the face of climatic challenge. Here we identify the spatial distribution of diversity and endemism in Astragalus , using species distribution models for 752 species...

Recent work has shown the decline of insect abundance, diversity, and biomass, with potential implications for ecosystem services. These declines are especially pronounced in regions with high human activity, and urbanization is emerging as a significant contributing factor. However, the scale of these declines and the traits that determine variati...

The digitization and open availability of life history traits measured directly from individuals provide a key means of linking organismal function to environmental and ecological contexts at fine resolution. These linkages play a critical role in understanding trait‐mediated response to global change, with particular need to resolve them for taxa...

Humans did not arrive on most of the world’s islands until relatively recently, making islands favorable places for disentangling the timing and magnitude of natural and anthropogenic impacts on species diversity and distributions. Here, we focus on Amazona parrots in the Caribbean, which have close relationships with humans (e.g., as pets as well...

Predicting potential distributions of species in new areas is challenging. Physiological data can improve interpretation of predicted distributions and can be used in directed distribution models. Nonnative species provide useful case studies. Panther chameleons (Furcifer pardalis) are native to Madagascar and have established populations in Florid...

Aim Here we determine centers of species richness (SR), relative phylogenetic diversity (RPD) and centers of paleo- and neo-endemism, and regionalizations of phylogenetic diversity in the mimosoid clade of the legumes to understand the distribution and environmental associates of mimosoids lacking RNS (root nodule symbiosis). Location Global. Tim...

All aspects of biodiversity research, from taxonomy to conservation, rely on data associated with species names. Effective integration of names across multiple fields is paramount and depends on the coordination and organization of taxonomic data. We assess current efforts and find that even key applications for well-studied taxa still lack commona...

The macroevolutionary processes that have shaped biodiversity across the temperate realm remain poorly understood and may have resulted from evolutionary dynamics related to diversification rates, dispersal rates, and colonization times, closely coupled with Cenozoic climate change. We integrated phylogenomic, environmental ordination, and macroevo...

The rate and extent of global biodiversity change is surpassing our ability to measure, monitor and forecast trends. We propose an interconnected worldwide system of observation networks — a global biodiversity observing system (GBiOS) — to coordinate monitoring worldwide and inform action to reach international biodiversity targets.

Producers and users contributing to diverse scientific enterprises are often siloed. FISHGLOB is a sociotechnical infrastructure supporting collaboration and data sharing between experts in, and users of, fish bottom trawl surveys, a form of ocean monitoring.

Before the arrival of Europeans, domestic cattle (Bos taurus) did not exist in the Americas, and most of our knowledge about how domestic bovines first arrived in the Western Hemisphere is based on historical documents. Sixteenth-century colonial accounts suggest that the first cattle were brought in small numbers from the southern Iberian Peninsul...

Context Dispersal typically consists of three components—departure, transience and settlement—each of which can be influenced by the landscape. A fundamental aspect of dispersal is the dispersal kernel, which describes how the likelihood of settlement varies as a function of the distance from the departure location. Dispersal concepts are often clo...

The mulberry genus, Morus L. (Moraceae), has long been taxonomically difficult, and its species circumscription has only been defined recently. This genus comprises ca. 16 species distributed across Asia and the Americas, yet its biogeographic history remains poorly understood. In this study, we reconstructed the phylogeny and explored the biogeogr...

The iNaturalist platform generates millions of research-grade biodiversity records via a system in which users collectively reach consensus on taxonomic identification. In the present article, we examine how identifiers and their efforts, an understudied component of the platform, support data generation. Identification is keeping pace with rapid g...

Changes in phenology in response to ongoing climate change have been observed in numerous taxa around the world. Differing rates of phenological shifts across trophic levels have led to concerns that ecological interactions may become increasingly decou-pled in time, with potential negative consequences for populations. Despite widespread evidence...

Astragalus (Fabaceae), with more than 3,000 species, represents a successful radiation of morphologically highly similar species found across the Northern Hemisphere. It has attracted attention from systematists and biogeographers, who have asked what factors might be behind the extraordinary diversity of this important arid-adapted clade and what...

The use of gDNAs isolated from museum specimens for high throughput sequencing, especially targeted sequencing in the context of phylogenetics, is a common practice. Yet, little understanding has been focused on comparing the quality of DNA and results of sequencing museum DNAs. Dragonflies and damselflies are ubiquitous in freshwater ecosystems an...

Many ecologists increasingly advocate for research frameworks centered on the use of 'big data' to address anthropogenic impacts on ecosystems. Yet, experiments are often considered essential for identifying mechanisms and informing conservation interventions. We highlight the complementarity of these research frameworks and expose largely untapped...

Premise--Plant trait data are essential for quantifying biodiversity and function across Earth, but these data are challenging to acquire for large studies. Diverse strategies are needed, including the liberation of heritage data locked within specialist literature such as floras and taxonomic monographs. Here we report FloraTraiter, a novel approa...

Butterfly migration across great distances is testimony to their impressive aeronautical skills. Wing size and shape are two key determinants of flight performance, and in butterflies, the specific configuration of forewings to hindwings including the overlapping area between them can have profound effects on overall size and shape. Here we use qua...

Butterflies are a diverse and charismatic insect group that are thought to have evolved with plants and dispersed throughout the world in response to key geological events. However, these hypotheses have not been extensively tested because a comprehensive phylogenetic framework and datasets for butterfly larval hosts and global distributions are la...

Land use and land cover (LULC) change has been identified as an important driver of emerging mosquito-borne zoonotic diseases. However, studies are often limited to individual vector species, despite the potential for interspecific variation in vector competency within mosquito assemblages. This variation can affect transmission hazard, particularl...

Studies of long-term trends in phenology often rely on climatic averages or accumulated heat, overlooking climate variability. Here we test the hypothesis that unusual weather conditions are critical in driving adult insect phenology. First, we generate phenological estimates for Lepidoptera (moths and butterflies) across the Eastern USA, and over...