Robert Fisher

United States Geological Survey | USGS · Western Ecological Research Center

Context. Skinks comprise the dominant component of the terrestrial vertebrate fauna in Oceania, New Guinea, and Eastern Wallacea (ONGEW). However, knowledge of their diversity is incomplete, and their conservation needs are poorly understood. Aims. To explore the diversity and threat status of the skinks of ONGEW and identify knowledge gaps and con...

Spatially heterogeneous landscape factors such as urbanisation can have substantial effects on the severity and spread of wildlife diseases. However, research linking patterns of pathogen transmission to landscape features remains rare. Using a combination of phylogeographic and machine learning approaches, we tested the influence of landscape and...

Habitat loss, flood control infrastructure, and drought have left most of southern California and northern Baja California’s native freshwater fish near extinction, including the endangered unarmored threespine stickleback (Gasterosteus aculeatus williamsoni). This subspecies, an unusual morph lacking the typical lateral bony plates of the G. acule...

Species extinction and loss of biodiversity are major crises in the Anthropocene. Translocations of threatened and endangered species, the movement of individuals to augment existing or establish new populations, are increasingly important conservation tools, but have historically had limited success. Selection of a suitable receiver site is essent...

The glossy snake (Arizona elegans) is a polytypic species broadly distributed across southwestern North America. The species occupies habitats ranging from California’s coastal chaparral to the shortgrass prairies of Texas and southeastern Nebraska, to the extensive arid scrublands of central México. Three subspecies are currently recognized in Cal...

Abstract Identifying how natural (i.e., unaltered by human activity) and anthropogenic landscape variables influence contemporary functional connectivity in terrestrial organisms can elucidate the genetic consequences of environmental change. We examine population genetic structure and functional connectivity among populations of a declining specie...

Cryptic ecologies, the Wallacean Shortfall of undocumented species' geographical ranges and the Linnaean Shortfall of undescribed diversity, are all major barriers to conservation assessment. When these factors overlap with drivers of extinction risk, such as insular distributions, the number of threatened species in a region or clade may be undere...

Conservation translocations, the human-mediated movement and release of a living organism for a conservation benefit, are increasingly recommended in species’ recovery plans as a technique for mitigating population declines or augmenting genetic diversity. However, translocation protocols for species with broad distributions may require regionally...

Movements by animals can serve different functions and occur over a variety of spatial and temporal scales. Routine movement types, such as residency (localized movements) and migration, have been well studied. However, nonroutine movement types, such as dispersal, prospecting, and nomadism, are less well understood. Documenting these rarely detect...

Early detection and rapid response (EDRR) can help mitigate and control invasive species outbreaks early on but its success is dependent on accurate identification of invasive species. We evaluated a novel outbreak in San Diego County, California of the Sonoran Spotted Whiptail ( Aspidoscelis sonorae ) in order to confirm their spread as well as qu...

Prolonged drought due to climate change has negatively impacted amphibians in southern California, U.S.A. Due to the severity and length of the current drought, agencies and researchers had growing concern for the persistence of the arroyo toad (Anaxyrus californicus), an endangered endemic amphibian in this region. Range‐wide surveys for this spec...

The importance of terrestrial coastal ecosystems for maintaining healthy coral reef ecosystems remains understudied. Sea kraits are amphibious snakes that require healthy coral reefs for foraging, but little is known about their requirements of terrestrial habitats, where they slough their skin, digest prey, and breed. Using concurrent microclimate...

The endangered mountain yellow‐legged frog (Rana muscosa) has been reduced to <10 isolated populations in the wild. Due to frequent catastrophic events (floods, droughts, wildfires), the recent dynamics of these populations have been erratic, making the future of the species highly uncertain. In 2018, a recovery plan was developed to improve the sp...

Species distributions are governed by processes occurring at multiple spatial scales. For species with complex life cycles, the needs of all life stages must be met within the dispersal limitations of the species. Multi‐scale processes can be particularly important for these species, where small‐scale patterns in specific habitat components can aff...

Golden eagles (Aquila chrysaetos) are of increasing conservation concern in western North America. Effective conservation measures for this wide-ranging, federally protected raptor species require monitoring frameworks that accommodate strong inference on the status of breeding populations across vast landscapes. We used a broad-scale sampling desi...

Sex-related differences in mortality are widespread in the animal kingdom. Although studies have shown that sex determination systems might drive lifespan evolution, sex chromosome influences on aging rates have not been investigated so far, likely due to an apparent lack of demographic data from clades including both XY (with heterogametic males)...

The purpose of the present application, under Articles 74.1.1 and 81.1 of the Code, is to maintain consistent usage of the commonly used name Emoia nigra (Hombron & Jacquinot, 1853) by setting aside a lectotype designation for Gongylus (Eumeces) freycineti Duméril & Bibron, 1839 by Wells & Wellington in 1985 in favour of a later lectotype designati...

We discuss the problems associated with beaver disturbance and its effects on conserving the region's native fauna and flora. We refute arguments underlying the claim that beaver is native to the region, and review paleontological, zooarchaeological, and historical survey data from renowned field biologists and naturalists over the past ~160 years...

Extensive urbanization in coastal southern California has reduced natural habitat in this biodiversity hotspot. To better conserve ecological communities, state and federal agencies, along with local jurisdictions and private stakeholders, developed regional conservation plans for southern California. Although many protected areas exist within this...

Abstract Most invasive species are not studied during their initial colonization of ecosystems to which they were recently introduced. Rather, research is typically performed after invasive species are well established and causing harm to the native biodiversity. Thus, novel adaptations of invasive species during their initial invasions are rarely...

Rediscovery of living populations of a species that was presumed to be extirpated can generate new narratives for conservation in areas suffering from losses in biodiversity. We used field observations and DNA sequence data to verify the rediscovery of the Critically Endangered scincid lizard Emoia slevini on Dåno′, an islet off the coast of Guam i...

Climate change and prolonged drought have negatively impacted amphibians in southern California, U.S.A. Due to the severe drought from 2012–2016, agencies and researchers had growing concern for the persistence of the arroyo toad ( Anaxyrus californicus ), an endangered endemic amphibian in this region. Range-wide surveys for this species had not b...

Migratory amphibians are at high risk of negative impacts when roads intersect their upland and breeding habitats. Road mortality can reduce population abundance, survivorship, breeding, recruitment, and probability of long-term persistence. Increasingly, environmental planners recommend installation of under-road tunnels with barrier fencing to re...

Accurate status assessments of long-lived, widely distributed taxa depend on the availability of long-term monitoring data from multiple populations. However, monitoring populations across large temporal and spatial scales is often beyond the scope of any one researcher or research group. Consequently, wildlife managers may be tasked with utilizing...

The interaction between climate change and biological invasions is a global conservation challenge with major consequences for invasive species management. However, our understanding of this interaction has substantial knowledge gaps; this is particularly relevant for invasive snakes on islands because they can be a serious threat to island ecosyst...

The widespread parthenogenetic gecko Lepidodactylus lugubris is comprised of several clonal lineages, at least one of which has been known for some time to have originated from hybridization between its maternal ancestor, Lepidodactylus moestus, and a putatively undescribed paternal ancestor previously known only from remote islands in the Central...

Conservation of species reliant on ephemeral resources can be especially challenging in the face of a changing climate. Western spadefoots (Spea hammondii) are small burrowing anurans that breed in ephemeral pools, but adults spend the majority of their lives underground in adjacent terrestrial habitat. Western spadefoots are of conservation concer...

The invasiveness of nonnative taxa can vary across a landscape due to environmental gradients, suggesting that location-dependent management strategies may be more effective at reducing spread compared to a “one size fits all” approach across the entire introduced range. Using bait stations placed along linear transects within habitat preserves, we...

The western pond turtle (WPT) was formerly considered a single species ( Actinemys or Emys marmorata ) that ranged from southern British Columbia, Canada to Baja California, México. More recently it was divided into a northern and a southern species. WPTs are found primarily in streams that drain into the Pacific Ocean, although scattered populatio...

• A central theme for conservation is understanding how animals differentially use, and are affected by change in, the landscapes they inhabit. However, it has been challenging to develop conservation schemes for habitat-specific behaviors. • Here we use behavioral change point analysis to identify behavioral states of golden eagles (Aquila chrysae...

Animals often exhibit distinct microbial communities when maintained in captivity as compared to when in the wild. Such differentiation may be significant in headstart and reintroduction programs where individuals spend some time in captivity before release into native habitats. Using 16S rRNA gene sequencing, we (i) assessed differences in gut mic...

The Coyote Mountain desert snail (Sonorelix harperi carrizoensis) was described in 1937 from 30 dry shells collected the previous year. We reviewed the literature and museum records and found two additional shell collections for this subspecies from the type locality with the latest being from 1958, and one collection from an adjacent mountain rang...

Fragmentation within urbanized environments often leads to a loss of native species diversity; however, variation exists in responses among‐species and among‐populations within species. We aimed to identify patterns in species biogeography in an urbanized landscape to understand anthropogenic effects on vertebrate communities and identify species t...

Niche breadth and position can influence diversification among closely related species or populations, yet limited empirical data exist concerning the predictability of the outcomes. We explored the effects of these factors on the evolution of the Emoia atrocostata species group, an insular radiation of lizards in the western Pacific Ocean and Indo...

Niche breadth and position can influence diversification among closely related species or populations, yet limited empirical data exist concerning the predictability of the outcomes. We explored the effects of these factors on the evolution of the Emoia atrocostata species group, an insular radiation of lizards in the western Pacific Ocean and Indo...

Populations of the western spadefoot (Spea hammondii) in southern California occur in one of the most urbanized and fragmented landscapes on the planet and have lost up to 80% of their native habitat. Orange County is one of the last strongholds for this pond-breeding amphibian in the region, and ongoing restoration efforts targeting S. hammondii h...

The interaction of climate change and invasive species is a global conservation challenge with major consequences for invasive species management. However, our current understanding on this interaction is still filled with substantial knowledge gaps. These are particularly relevant in the context of islands and invasive snakes, which represent a se...

Urban development has major impacts on connectivity among wildlife populations and is thus likely an important factor shaping pathogen transmission in wildlife. However, most investigations of wildlife diseases in urban areas focus on prevalence and infection risk rather than potential effects of urbanisation on transmission itself. Feline immunode...

The geomorphological formation of the Baja California peninsula and the Gulf of California is a principal driver of diversification for the reptiles of North America’s warm deserts. The western banded gecko, Coleonyx variegatus, is distributed throughout the Mojave, Sonoran and Peninsular deserts. In this study we use multilocus sequence data to ad...

Background The southern California biodiversity hotspot has had a complex geological history, with both plate tectonic forces and sea level changes repeatedly reconfiguring the region, and likely driving both lineage splittings and extinctions. Here we investigate patterns of genetic divergence in two species of slender salamanders (Plethodontidae:...

The salamander chytrid fungus (Batrachochytrium salamandrivorans [Bsal]) is causing massive mortality of salamanders in Europe. The potential for spread via international trade into North America and the high diversity of salamanders has catalyzed concern about Bsal in the U.S. Surveillance programs for invading pathogens must initially meet challe...

Long‐term ecological monitoring provides valuable and objective scientific information to inform management and decision‐making. In this article, we analyze 22 years of herpetofauna monitoring data from the Point Loma Ecological Conservation Area (PLECA), an insular urban reserve near San Diego, CA. Our analysis showed that counts of individuals fo...

The western pond turtle (WPT), recently separated into two paripatrically distributed species ( Emys pallida and Emys marmorata ), is experiencing significant reductions in its range and population size. In addition to habitat loss, two potential causes of decline are female-biased road mortality and high juvenile mortality from non-native predator...

Abstract— The Coyote Mountain desert snail (Sonorelix harperi carrizoensis) was described in 1937 from 30 dry shells collected the previous year. We reviewed the literature and museum records and found two additional shell collections for this subspecies from the type locality with the latest being from 1958, and one collection from an adjacent mou...

Abstract. The brown anole, Anolis sagrei, is a native species to the Caribbean; however, A. sagrei has invaded multiple parts of the USA, including Florida, Louisiana, Hawai'i and more recently California. The biological impacts of A. sagrei invading California are currently unknown. Evidence from the invasion in Taiwan shows that they spread quick...

The brown anole, Anolis sagrei, is a native species to the Caribbean; however, A. sagrei has invaded multiple parts of the USA, including Florida, Louisiana, Hawai'i and more recently California. The biological impacts of A. sagrei invading California are currently unknown. Evidence from the invasion in Taiwan shows that they spread quickly and whe...

Climate change-induced extinctions are estimated to eliminate one in six known species by the end of the century. One major factor that will contribute to these extinctions is extreme climatic events. Here, we show the ecological impacts of recent record warm air temperatures and simultaneous peak drought conditions in California. From 2008–2016, t...

Determining the spatial scale at which landscape features influence population persistence is an important task for conservation planning. One challenge is that sampling biases confound factors that influence species occurrence and survey effort. Recent developments in Point Process Models (PPMs) enable researchers to disentangle the sampling proce...

Chapters in the above report include: Spatial Mapping-California Essential Habitat Connectivity Lands, Highways, and High-Risk Species. Movement of California Tiger Salamanders Along Barrier Fencing and Underpasses in Stanford, CA. Movement of Yosemite Toads Along Barrier Fencing and a Novel Elevated Road Segment in Sierra National Forest, CA...

The Argentine ant (Linepithema humile) is a widespread and abundant introduced species that disrupts ecosystems throughout its introduced range. This invader was inadvertently introduced to Santa Catalina, San Clemente, Santa Cruz, and San Nicolas Islands at various points during the past century but currently appears to be absent from the remainin...

Urbanization is a major factor driving habitat fragmentation and connectivity loss in wildlife. However, the impacts of urbanization on connectivity can vary among species and even populations due to differences in local landscape characteristics, and our ability to detect these relationships may depend on the spatial scale at which they are measur...

An animal's movement is expected to be governed by an interplay between goals determined by its internal state and energetic costs associated with navigating through the external environment. Understanding this ecological process is challenging when an animal moves in two dimensions and even more difficult for birds that move in a third dimension....

Despite increasing interest in determining the population-level effects of emerging infectious diseases on wildlife, estimating effects of disease on survival rates remains difficult. Even for a well-studied disease such as amphibian chytridiomycosis (caused by the fungus Batrachochytrium dendrobatidis [Bd]), there are few estimates of how survival...

The importance of long-distance dispersal (LDD) in shaping geographical distributions has been debated since the nineteenth century. In terrestrial vertebrates, LDD events across large water bodies are considered highly improbable, but organismal traits affecting dispersal capacity are generally not taken into account. Here, we focus on a recent li...

Invasive snakes can lead to the rapid extinction of endemic vertebrates on insular ecosystems, usually because snakes are an efficient and novel predator. There have been no successful (i.e. complete) eradications to date of invasive snakes on islands. In this study we assess a novel invasion on Gran Canaria in the Canary Islands. The invader, the...

Bird movements vary spatially and temporally, but the primary drivers that explain such variation can be difficult to identify. For example, it is well known that the availability of updraft influences soaring flight and that topography interacts with weather to produce these updrafts. However, the influences of topography on flight are not well un...

Invasive alien species are a major threat to native insular species. Eradicating invasive mammals from islands is a feasible and proven approach to prevent biodiversity loss. We developed a conceptual framework to identify globally important islands for invasive mammal eradications to prevent imminent extinctions of highly threatened species using...

Table of islands, country or territory of ownership, invasive mammals and highly threatened species occurring on island, island rank reflecting conservation value, and timeframe assessed by socio-political survey in which an eradication could feasibly be initiated. Invasive mammal species listed are only those identified as having negative impact o...

Table of islands where no socio-political feasibility data was available during this study, country or territory of ownership, invasive mammals and highly threatened species occurring on island. Invasive mammal species listed are only those identified as having negative impact on highly threatened species and fall below island area and human popula...

Additional figures, tables and text supporting the main paper. (DOCX)

Habitat degradation, entwined with land cover change, is a major driver of biodiversity loss. Effects of land cover change on species can be direct (when habitat is converted to alternative land cover types) or indirect (when land outside of the species habitat is altered). Hydrologic and ecological connections between terrestrial and aquatic system...

Changing climate will impact species' ranges only when environmental variability directly impacts the demography of local populations. However, measurement of demographic responses to climate change has largely been limited to single species and locations. Here we show that amphibian communities are responsive to climatic variability, using >500,00...