Richard Shine

Macquarie University

Mitochondrial DNA (mtDNA) has been widely used in genetics research for decades. Contamination from nuclear DNA of mitochondrial origin (NUMT) can confound studies of phylogenetic relationships and mtDNA heteroplasmy. Homology searches with mtDNA are widely used to detect NUMTs in the nuclear genome. Nevertheless, false positive detection of NUMTs...

Heat therapy has been reported as a safe, effective, and readily available treatment method for heat-tolerant frogs infected with Batrachochytrium dendrobatidis (Bd). We treated wild-caught Australian green tree frogs (Litoria caerulea) infected with Bd using two periods of elevated ambient room temperature (28.2–30.3 °C for 7 weeks followed by 28....

Many threats to biodiversity cannot be eliminated; for example, invasive pathogens may be ubiquitous. Chytridiomycosis is a fungal disease that has spread worldwide, driving at least 90 amphibian species to extinction, and severely affecting hundreds of others1, 2, 3–4. Once the disease spreads to a new environment, it is likely to become a permane...

The energy allocation decisions that organisms make can differ between sexes and populations and can be influenced by factors such as age and parasite infection. We conducted experimental parasite infections on common-garden reared cane toads originating from sites across the species’ invasive range in Australia to assess how sex, parasite infectio...

Aim: Squamate fitness is affected by body temperature, which in turn is influenced by environmental temperatures and, in many species, by exposure to solar radiation. The biophysical drivers of body temperature have been widely studied, but we lack an integrative synthesis of actual body temperatures experienced in the field, and their relationship...

Context. Masked water snakes (Homalopsis buccata, Homalopsidae) thrive in the muddy edges of agricultural ponds and canals in densely populated areas of West Java, Indonesia, and are harvested by local farmers to protect fish stocks and to provide meat, skins, and medicines for commercial use. Aims. Here, we aimed to quantify sexual dimorphism and...

Diminishing natural resources and increasing climatic volatility are impacting agri-food systems, prompting the need for sustainable and resilient alternatives. Python farming is well established in Asia but has received little attention from mainstream agricultural scientists. We measured growth rates in two species of large pythons (Malayopython...

Many organisms can adjust their development according to environmental conditions, including the presence of conspecifics. Although this developmental plasticity is common in amphibians, its underlying molecular mechanisms remain largely unknown. Exposure during development to either ‘cannibal cues’ from older conspecifics, or ‘alarm cues’ from inj...

By imposing novel selection pressures on both participants, biological invasions can modify evolutionary ‘arms races’ between hosts and parasites. A spatially replicated cross-infection experiment reveals strong spatial divergence in the ability of lungworms (Rhabdias pseudosphaerocephala) to infect invasive cane toads (Rhinella marina) in Australi...

Inducible defences can improve survival in variable environments by allowing individuals to produce defences if they detect predators. These defences are often expressed as inter‐related developmental, morphological, and behavioural changes. However, producing defences can incur costs, which may be expressed immediately and/or during subsequent lif...

Many Australians who work outdoors (notably, farmers and graziers) routinely kill venomous snakes. We argue that this attitude is misguided and dangerous. Despite their fearsome reputation, venomous Australian snakes pose little risk to human health (snakes kill an average of less than three people per year in Australia). Also, snakes confer a subs...

Evolutionary shifts from one habitat type to another can clarify selective forces that affect life-history attributes. Four lineages of snakes (acrochordids and three clades within the Elapidae) have invaded marine habitats, and all have larger offspring than do terrestrial snakes. Predation by fishes on small neonates offers a plausible selective...

The transition from terrestrial to aquatic life by hydrophiine elapid snakes modified targets of natural selection and likely affected sexual selection also. Thus, the shift to marine life also might have affected sexual dimorphism. Our measurements of 419 preserved specimens of six species of aipysurine snakes (genera Emydocephalus and Aipysurus)...

A phylogenetically diverse minority of snake and lizard species exhibit rostral and ocular appendages that substantially modify the shape of their heads. These cephalic horns have evolved multiple times in diverse squamate lineages, enabling comparative tests of hypotheses on the benefits and costs of these distinctive traits. Here, we demonstrate...

Competition among larval anurans can occur via interference as well as via a reduction in per-capita food supply. Previous research on intraspecific interference competition in cane toad (Rhinella marina) tadpoles found conflicting results, with one study detecting strong effects on tadpoles and another detecting no effects on metamorphs. A capacit...

Many organisms can adjust their development according to environmental conditions, including the presence of conspecifics. Although this developmental plasticity is common in amphibians, its underlying molecular mechanisms remain largely unknown. Exposure during development to either ‘cannibal cues’ from older conspecifics, or ‘alarm cues’ from inj...

Invasive species offer insights into rapid adaptations in novel environments. The iconic cane toad ( Rhinella marina ) is an excellent model for studying rapid adaptation during invasion. Previous research using the mitochondrial NADH dehydrogenase 3 ( ND3 ) gene in the Hawai′ian and Australian invasive populations found a single haplotype, indicat...

In many taxa, natural selection favours the ability of a female to accommodate a clutch or litter that is very large relative to her own body, placing a selective premium on traits that increase available abdominal space relative to litter volume. Flexible changes during pregnancy might help to mitigate these constraints. Using ultrasound scanning...

What factors render a species more vulnerable to extinction? In reptiles, foraging mode is a fundamental ecological dimension: some species actively search for immobile prey, whereas others ambush mobile prey. Foraging mode is linked to diet, morphology, movement ecology, and reproductive output, and hence plausibly might affect vulnerability to th...

The capacity for individuals to move long distances can profoundly influence how species are affected by localised threatening processes. Previous studies on the movement patterns of sea snakes have highlighted the highly site-attached nature of some species, but constraints on collecting data at large spatial and temporal scales have underestimate...

A range of abiotic parameters within a reptile nest influence the viability and attributes (including sex, behaviour and body size) of hatchlings that emerge from that nest. As a result of that sensitivity, a reproducing female can manipulate the phenotypic attributes of her offspring by laying her eggs at times and in places that provide specific...

Parasites may suppress the immune function of an infected host using microRNAs (miRNAs) to prevent protein production. Nonetheless, little is known about the diversity of miRNAs and their mode(s) of action. In this study, we investigated the effects of infection by a parasitic lungworm ( Rhabdias pseudosphaerocephala ) on miRNA and mRNA expression...

Biological invasions can favour rapid changes in intraspecific competitive mechanisms such as cannibalism by imposing novel evolutionary pressures. For example, cane toad (Rhinella marina) tadpoles are highly cannibalistic on eggs and hatchlings in their invasive range in Australia, but not in their native range in South America. Whether such chang...

Variation in food resources can result in dramatic fluctuations in the body condition of animals dependent on those resources. Decreases in body mass can disrupt patterns of energy allocation and impose stress, thereby altering immune function. In this study, we investigated links between changes in body mass of captive cane toads ( Rhinella marina...

Natural populations can show rapid adaptive responses to intense (human-mediated) environmental change. The potential for exploiting rapidly evolved traits for conservation management has been often discussed but rarely implemented. Capitalizing on a well-studied biological invasion, we here explore the idea that rapid phenotypic change in the inva...

Rhabdias pseudosphaerocephala is a well-studied invasive nematode parasite of amphibians. However, there are several outstanding questions about R. pseudosphaerocephala that are best answered using genomic data. This species differs phenotypically across its invasive range. These differences are challenging to interpret because this species is part...

By imposing novel evolutionary pressures, biological invasions can favour rapid changes in intraspecific competitive mechanisms such as cannibalism. In their invasive range in Australia but not in their native range in South America, cane toads ( Rhinella marina ) exhibit high rates of cannibalism of embryos (eggs and hatchlings) by tadpoles. To ex...

Bacterial assemblages on amphibian skin may play an important role in protecting hosts against infection. In hosts that occur over a range of environments, geographic variation in composition of bacterial assemblages might be due to direct effects of local factors and/or to evolved characteristics of the host. Invasive cane toads (Rhinella marina)...

Marine environments show strong cycles at daily (tidal), monthly (lunar) and seasonal timeframes, and the behavioural responses of marine organisms to such cycles may depend upon ecological and behavioural traits that differ between the sexes. Underwater observations of free-ranging olive sea snakes (Aipysurus laevis, Hydrophiinae, Elapidae) at a s...

Although they are among the most abundant snakes on Earth, and are heavily exploited for their skins and meat, Asian bockadams (or “dog-faced water snakes”, Cerberus schneiderii) have attracted relatively little study across their wide geographic range. Based on dissection of 3,382 snakes brought to processing facilities in and around the city of C...

The evolution of bright ‘warning’ colours in nontoxic animals often is attributed to mimicry of toxic species, but empirical tests of that hypothesis must overcome the logistical challenge of quantifying differential rates of predation in nature. Populations of a harmless sea snake species ( Emydocephalus annulatus ) in New Caledonia exhibit colour...

Context. Across much of its geographic range, the masked water snake, Homalopsis buccata, is harvested each year in large numbers, questioning the sustainability of that offtake. Aims. To quantify abundance and demography of water snakes in anthropogenically disturbed habitats in an area of West Java, where these snakes are subject to intensive har...

Context Unsustainable harvesting can threaten wildlife populations and jeopardise the livelihoods of people relying on wildlife resources. Although millions of rainbow mudsnakes (Enhydris enhydris) are harvested from wetland agroecosystems in tropical Asia each year, few detailed studies have been conducted on the biology of this species. Aims We a...

The first survey of sea snakes (Elapidae, Hydrophiinae) at the remote Entrecasteaux atolls, Coral Sea, was conducted using remote unbaited 360° video cameras (RUV360), in 2021. We detected 49 snakes belonging to at least six species (Aipysurus duboisii, A. laevis, Hydrophis coggeri, H. macdowelli, H. major and H. ornatus) at the two largest atolls,...

Aim Viviparity has evolved more times in squamates than in any other vertebrate group; therefore, squamates offer an excellent model system in which to study the patterns, drivers and implications of reproductive mode evolution. Based on current species distributions, we examined three selective forces hypothesized to drive the evolution of squamat...

Abstract Coevolutionary host–parasite “arms races” can be disrupted by new evolutionary forces imposed by biological invasions, affecting both host and parasite densities, as well as their traits. The spread of cane toads (Rhinella marina) and their parasitic lungworm (Rhabdias pseudosphaerocephala) across tropical Australia provides an ideal oppor...

Comparative studies of mortality in the wild are necessary to understand the evolution of aging; yet, ectothermic tetrapods are underrepresented in this comparative landscape, despite their suitability for testing evolutionary hypotheses. We present a study of aging rates and longevity across wild tetrapod ectotherms, using data from 107 population...

Wildfires can modify habitat attributes, and those changes may differentially affect males versus females within a species if there is pre-existing niche divergence between the sexes. We used radio-tracking and dissections to study invasive cane toads (Rhinella marina), and performed transect counts on native frogs and cane toads 12 months after ex...

As an invasive organism spreads into a novel environment, it may encounter strong selective pressures to adapt to abiotic and biotic challenges. We examined the effect of water temperature during larval life on rates of survival and growth of the early life-history stages of cane toads (Rhinella marina) from two geographic regions (tropical vs. tem...

Although giant snakes are abundant in some tropical forests, their ecology is far less well-known than for smaller species of snakes in cooler climates. Information on spatial ecology can clarify management issues such as the sizes and types of habitats needed for conservation. We radio-tracked 27 scrub pythons (Simalia amethistina; snout-vent leng...

Life-history traits such as rates of growth, survival and reproduction can vary though time within a single population, or through space among populations, due to abiotically-driven changes in resource availability. In terrestrial reptiles, parameters such as temperature and rainfall generate variation in life-histories—but other parameters likely...

Evolutionary theory suggests that polymorphic traits can be maintained within a single population only under specific conditions, such as negative frequency-dependent selection or heterozygote advantage. Non-venomous turtle-headed sea snakes (Emydocephalus annulatus) living in shallow bays near Noumea in New Caledonia exhibit three colour morphs: b...

Evolutionary arms races can alter both parasite infectivity and host resistance, and it is difficult to separate the effects of these twin determinants of infection outcomes. We used a co-introduced, invasive host-parasite system (the lungworm Rhabdias pseudosphaerocephala and cane toads Rhinella marina), where rapid adaptation and dispersal have l...

In many species, cannibalism is uncommon and involves nonselective consumption of conspecifics as well as heterospecifics. However, within their invasive Australian range, cane toad larvae (Rhinella marina) specifically target and voraciously consume the eggs and hatchlings of conspecifics, often extirpating entire clutches. In contrast, toad larva...

Adaptations of post‐hatching animals have attracted far more study than have embryonic responses to environmental challenges, but recent research suggests that we have underestimated the complexity and flexibility of embryos. We advocate a dynamic view of embryos as organisms capable of responding – on both ecological and evolutionary timescales –...

Competition within and among species can play a key role in structuring the assemblages of anuran tadpoles. Previous studies have reported that tadpoles of the invasive cane toad ( Rhinella marina ) are more strongly disadvantaged by the presence of native frog tadpoles than by the same number of conspecific toad tadpoles. That effect might arise f...

How innovations such as vision, flight and pregnancy evolve is a central question in evolutionary biology. Examination of transitional (intermediate) forms of these traits can help address this question, but these intermediate phenotypes are very rare in extant species. Here we explore the biology and evolution of transitional forms of pregnancy th...

Biological invasions can modify the behaviour of vulnerable native species in subtle ways. For example, native predators may learn or evolve to reduce foraging in conditions (habitats, times of day) that expose them to a toxic invasive species. In tropical Australia, freshwater crocodiles (Crocodylus johnstoni) are often fatally poisoned when they...

Understanding the mechanisms allowing invasive species to adapt to novel environments is a challenge in invasion biology. Many invaders demonstrate rapid evolution of behavioural traits involved in range expansion such as locomotor activity, exploration and risk-taking. However, the molecular mechanisms that underpin these changes are poorly unders...

Reptile eggs develop in intimate association with microbiota in the soil, raising the possibility that embryogenesis may be affected by shifts in soil microbiota caused by anthropogenic disturbance, translocation of eggs for conservation purposes, or laboratory incubation in sterile media. To test this idea we incubated eggs of keelback snakes (Tro...

The frequency and severity of wildfires are increasing due to anthropogenic modifications to habitats and to climate. Post-fire landscapes may advantage invasive species via multiple mechanisms, including changes to host–parasite interactions. We surveyed the incidence of endoparasitic lungworms ( Rhabdias pseudosphaerocephala ) in invasive cane to...

Invasions often accelerate through time, as dispersal-enhancing traits accumulate at the expanding range edge. How does the dispersal behaviour of individual organisms shift to increase rates of population spread? We collate data from 44 radio-tracking studies (in total, of 650 animals) of cane toads (Rhinella marina) to quantify distances moved pe...

Geographical variation in abiotic and biotic conditions can significantly affect the rate that an invasive species expands its range. The colonisation of Australia by cane toads (Rhinella marina) has attracted extensive research, but mostly in tropical regions rather than cooler climatic zones. We assembled multiple datasets to characterise the his...

For sea snakes as for many types of animals, long-term studies on population biology are rare and hence, we do not understand the degree to which annual variation in population sizes is driven by density-dependent regulation versus by stochastic abiotic factors. We monitored three populations of turtle-headed sea snakes ( Emydocephalus annulatus )...

Evolutionary arms races can alter both parasite infectivity and host resistance, and it is difficult to separate the effects of these twin determinants of infection outcomes. Using a co-introduced, invasive host-parasite system (the lungworm Rhabdias pseudosphaerocephala and the cane toad Rhinella marina), we quantified behavioural responses of par...

In snakes, divergence in head size between the sexes has been interpreted as an adaptation to intersexual niche divergence. By overcoming gape-limitation, a larger head enables snakes of one sex to ingest larger prey items. Under this hypothesis, we do not expect a species that consumes only tiny prey items to exhibit sex differences in relative he...

Competition within and among species can play a key role in structuring the assemblages of anuran tadpoles. Previous studies have reported that tadpoles of the invasive cane toad ( Rhinella marina ) are more strongly disadvantaged by the presence of native frog tadpoles than by the same number of conspecific toad tadpoles. That effect might arise f...

Understanding the mechanisms underlying rapid adaptation of invasive species in novel environments is key to improving our ability to manage these species. Many invaders demonstrate rapid evolution of behavioural traits involved in range expansion such as locomotor activity, exploration and risk-taking. However, the molecular mechanisms that underp...

Cane toads (Rhinella marina) are notoriously successful invaders: from 101 individuals brought to Australia in 1935, poisonous toads now cover an area >1.2 million km2 with adverse effects on native fauna. Despite extensive research on the role of macroparasites in cane toad invasion, viral research is lagging. We compared viral prevalence and dive...

Significance Invasive species are known for their ability to achieve high densities within their introduced range. Hence, invaders often face strong competition from members of their own species. Mechanisms for reducing intraspecific competition may therefore be favored in invasive populations, such as cannibalism, in which individuals kill and eat...

Scuba-divers on tropical coral-reefs often report unprovoked “attacks” by highly venomous Olive sea snakes ( Aipysurus laevis ). Snakes swim directly towards divers, sometimes wrapping coils around the diver’s limbs and biting. Based on a focal animal observation study of free-ranging Olive sea snakes in the southern Great Barrier Reef, we suggest...

Biological invasions can massively disrupt ecosystems, but evolutionary and ecological adjustments may modify the magnitude of that impact through time. Such post-colonisation shifts can change priorities for management. We quantified the abundance of two species of giant monitor lizards, and of the availability of their mammalian prey, across 45 s...

Amphibian skin secretions (substances produced by the amphibian plus microbiota) plausibly act as a first line of defense against parasite/pathogen attack, but may also provide chemical cues for pathogens. To clarify the role of skin secretions in host–parasite interactions, we conducted experiments using cane toads (Rhinella marina) and their lung...

Understanding how animal populations respond to environmental factors is critical because large-scale environmental processes (e.g., habitat fragmentation, climate change) are impacting ecosystems at unprecedented rates. On an overgrazed floodplain in north-western Australia, a native rodent (Pale Field Rat, Rattus tunneyi ) constructs its burrows...

Chemical cues produced by late-stage embryos of the cane toad ( Rhinella marina ) attract older conspecific larvae, which are highly cannibalistic and can consume an entire clutch. To clarify the molecular basis of this attraction response, we presented captive tadpoles with components present in toad eggs. As previously reported, attractivity aris...

Like most invasive species, cane toads have attracted less research in their native range than in invaded areas. We radio-tracked 34 free-ranging toads in French Guiana, a source region for most invasive populations, across two coastal and two rainforest sites. Coastal toads generally sheltered in pools of fresh or brackish water but nocturnally fo...

Despite broad scientific consensus that sustainable use of wildlife can enhance conservation efforts, ethical concerns have led some community groups to oppose use of wild animals. Voicing those concerns is legitimate, but underlying philosophical bias should not influence science‐based analysis and interpretation. We argue that philosophical biase...