Rene A. Abesamis

• PhD
• University of the Philippines System

While benthic characteristics of coral reef habitats are a major driver of the structure of coral reef fish assemblages, non-reef habitats adjacent to coral reefs (e.g., mangroves, seagrass beds, and macroalgal beds) can affect reef fish assemblages. Here, we investigate how reef fish assemblages respond to local-scale benthic habitats within a cor...

Overfishing remains a threat to coral reef fishes worldwide, with large carnivores often disproportionately vulnerable. Marine protected areas (MPAs) can restore fish populations and biodiversity, but their effect has been understudied in mesophotic coral ecosystems (MCEs), particularly in the Coral Triangle. Videos were analysed from baited remote...

Ectotherms display substantial demographic variation across latitudinal gradients of temperature. Higher temperatures are often associated with smaller size, rapid initial growth rates, and early maturation, generally described as the Temperature-Size Rule (TSR). The longevity of most ectotherms also declines at warmer, lower latitudes. However, th...

Monitoring changes in fish density and biomass inside marine protected areas (MPAs) through fish visual census (FVC) can determine if MPAs are achieving their goal of promoting fish population recovery. Simplified FVC methods have been developed for citizen scientists to enable them to monitor fish populations in MPAs. However, MPA monitoring progr...

Macroalgae‐dominated reefs are a prominent habitat in tropical seascapes that support a diversity of fishes, including fishery target species. To what extent, then, do macroalgal habitats contribute to small‐scale tropical reef fisheries? To address this question we: (1) Quantified the macroalgae‐associated fish component in catches from 133 small‐...

Marine protected areas (MPAs) have become a mainstay of marine resource management in the Philippines in the past three decades and there is growing advocacy to implement MPA networks — systems of MPAs that effectively protect sufficient proportions of the populations of targeted species. MPA networks aim to reduce fishery-induced mortality of targ...

Empirical evidence for increases in the reproductive potential (egg output per unit area) of coral reef fish in no‐take marine reserves (NTMRs) is sparse. Here, we inferred the development of reproductive potential in two species of protogynous reef fishes, Chlorurus bleekeri (Labridae: Scarinae) and Cephalopholis argus (Epinephelidae), inside and...

Patterns of reproductive ontogeny in four species of coral reef wrasses (F: Labridae) Hemigymnus melapterus, Hemigymnus fasciatus, Cheilinus fasciatus and Oxycheilinus digramma were investigated. Populations of each species were sampled from two island groups of the central Great Barrier Reef (GBR), Australia, and from coral reefs in the central Ph...

A Citizen application tool is developed to monitor the fish density and biomass for a Marine Protected Areas (MPAs) in the Philippines.

Understanding whether assemblages of species respond more strongly to bottom‐up (availability of trophic resources or habitats) or top‐down (predation pressure) processes is important for effective management of resources and ecosystems. We determined the relative influence of environmental factors and predation by humans in shaping the density, bi...

Connectivity between shallow coral reefs and adjacent deeper habitats may be crucial to reef ecosystem stability. However, deeper habitats such as mesophotic coral ecosystems (MCEs) remain understudied. We investigated the depth structuring of shore-fish assemblages in the central Philippines across shallow (10–30 m) and mesophotic (upper: 30–60 m,...

Nonreef habitats such as mangroves, seagrass, and macroalgal beds are important for foraging, spawning, and as nursery habitat for some coral reef fishes. The spatial configuration of nonreef habitats adjacent to coral reefs can therefore have a substantial influence on the distribution and composition of reef fish. We investigate how different hab...

An influential paradigm in coral reef ecology is that fishing causes trophic cascades through reef fish assemblages, resulting in reduced herbivory and thus benthic phase shifts from coral to algal dominance. Few long‐term field tests exist of how fishing affects the trophic structure of coral reef fish assemblages, and how such changes affect the...

Baited remote underwater stereo‐video systems (stereo‐BRUVs) are a popular tool to sample demersal fish assemblages and gather data on their relative abundance and body size structure in a robust, cost‐effective and non‐invasive manner. Given the rapid uptake of the method, subtle differences have emerged in the way stereo‐BRUVs are deployed and ho...

Juvenile fish often use alternative habitats distinct from their adult phases. Parrotfishes are an integral group of coral reef fish assemblages, are targeted in fisheries, are sensitive to reef disturbances, and have been documented as multiple-habitat users. Considering the abundance of research conducted on parrotfishes, very little is known abo...

Canopy-forming macroalgae can construct extensive meadow habitats in tropical seascapes occupied by fishes that span a diversity of taxa, life-history stages and ecological roles. Our synthesis assessed whether these tropical macroalgal habitats have unique fish assemblages, provide fish nurseries and support local fisheries. We also applied a meta...

A framework on the structure and dynamics of fisheries management is described. It is used to identify four opportunities and two challenges for fisheries policy in the Philippines if it were to rationally harness fisheries as fulcrum for sustainable food and protein security in the country in the next 10-30 years. This is, when climate conditions...

Canopy-forming macroalgae can construct extensive meadow habitats in tropical seascapes occupied by fishes that span a diversity of taxa, life history stages and ecological roles. Our synthesis assessed whether these tropical macroalgal habitats have unique fish assemblages, provide fish nurseries, and support local fisheries. We also applied a met...

No-take marine protected areas (MPAs) are an important tool for conserving marine biodiversity and managing fisheries. However, with increasing environmental change driven by local and global stressors, it is critical to understand whether MPAs can continue to provide social, economic and conservation benefits in the long-term. Here, we compare cor...

The Philippines is often highlighted as the global epicenter of marine biodiversity, yet surveys of reef-associated fishes in this region rarely extend beyond shallow habitats. Here, we improve the understanding of fish species diversity and distribution patterns in the Philippines by analyzing data from mesophotic coral ecosystems (MCEs; 30–150 m...

The Philippines is often highlighted as the globalepicenter of marine biodiversity, yet surveys of reef-asso-ciated fishes in this region rarely extend beyond shallowhabitats. Here, we improve the understanding of fish spe-cies diversity and distribution patterns in the Philippines byanalyzing data from mesophotic coral ecosystems (MCEs;30–150 m de...

Tropical reefs have been subjected to a range of anthropogenic pressures such as global climate change, overfishing and eutrophication that have raised questions about the prominence of macroalgae on tropical reefs, whether they pose a threat to biodiversity, and how they may influence the function of tropical marine ecosystems. We synthesise curre...

Marine protected areas (MPAs) are considered viable fisheries management tools due to their potential benefits of adult spillover and recruitment subsidy to nearby fisheries. However, before–after control–impact studies that explore the biological and fishery effects of MPAs to surrounding fisheries are scarce. We present results from a fine-scale...

Marine protected areas (MPAs) are considered viable fisheries management tools due to their potential benefits of adult spillover and recruitment subsidy to nearby fisheries. However, before-after control-impact studies that explore the biological and fishery effects of MPAs to surrounding fisheries are scarce. We present results from a fine-scale...

Instantaneous implementation of systematic conservation plans at regional scales is rare. More typically, planned actions are applied incrementally over periods of years or decades. During protracted implementation, the character of the connected ecological system will change as a function of external anthropogenic pressures, local metapopulation p...

No‐take marine reserves (NTMR) are increasingly being implemented to mitigate the effects of fishing on coral reefs, yet determining the efficacy of NTMRs depends largely on partitioning the effects of fishing from the effects protection on benthic habitat. Species of coral‐reef fishes typically decline in density when subjected to fishing or benth...

Baseline ecological studies of mesophotic coral ecosystems are lacking in the equatorial Indo-West Pacific region where coral reefs are highly threatened by anthropogenic and climate-induced disturbances. Here, we used baited remote underwater video to describe benthic habitat and fish assemblage structure from 10 to 80 m depth at Apo Island, a wel...

Saura () claims that studies using the Probability of Connectivity metric (PC) had already demonstrated the importance of including node self-connections in network metrics. As originally defined and used, PC cannot test the importance of self-connections. However, with key terms redefined, PC could be a useful tool in future work.

Networks of no-take marine reserves (NTMRs) are a widely advocated strategy for managing coral reefs. However, uncertainty about the strength of population connectivity between individual reefs and NTMRs through larval dispersal remains a major obstacle to effective network design. In this study, larval dispersal among NTMRs and fishing grounds in...

Network analysis is gaining increasing importance in conservation planning. However, which network metrics are the best predictors of metapopulation persistence is still unresolved. Here, we identify a critical limitation of graph theory-derived network metrics that have been proposed for this purpose: their omission of node self-connections. We re...

There is considerable global interest in rebuilding depleted populations of sea cucumbers (Echinodermata, Holothuroidea) to address conservation and economic goals. For the vast majority of holothurian species, the habitat and food requirements of the juvenile stage are poorly understood. We investigated the distribution and microhabitat associatio...

Ecosystems are under increasing pressure from external disturbances. Understanding how species that drive important functional processes respond to benthic and community change will have implications for predicting ecosystem recovery. Herbivorous fishes support reefs in coral-dominated states by mediating competition between coral and macroalgae. S...

Systematic conservation planning increasingly underpins the conservation and management of marine and coastal ecosystems worldwide. Amongst other benefits, conservation planning provides transparency in decision-making, efficiency in the use of limited resources, the ability to minimise conflict between diverse objectives, and to guide strategic ex...

Coral reefs within the Coral Triangle (CT) are home to the greatest marine diversity on the globe and are an important supplier of marine resources to densely populated coastal regions. Many coral reefs within the CT and around the world are under threat from over-exploitation. Marine protected areas (MPAs) have been proven to be effective tools in...

The question of whether biological systems are maintained by top-down versus bottom-up drivers is a recurring one in ecology. It is a particularly important question to address in the management of coral reefs, which are at risk from a variety of anthropogenic stressors. Here, we explicitly test whether the abundance of different feeding guilds of...

Peaks in the reproduction of coral reef fish in equatorial regions are hypothesised to usually coincide with periods of the year when winds are weaker, presumably to minimise larval transport and maximise recruitment. The annual patterns of spawning of four species of reef fish in the central Philippines (9.201355°N, 123.327421°E) were investigated...

Recent research has demonstrated that, despite a pelagic larval stage, many coral reef fishes disperse over relatively small distances, leading to well-connected populations on scales of 0–30 km. Although variation in key biological characteristics has been explored on the scale of 100–1000 s of km, it has rarely been explored at the scale relevant...

Well-designed and effectively managed networks of marine reserves can be effective tools for both fisheries management and biodiversity conservation. Connectivity, the demographic linking of local populations through the dispersal of individuals as larvae, juveniles or adults, is a key ecological factor to consider in marine reserve design, since i...

Coral reef fishes differ in their intrinsic vulnerability to fishing and rates of population recovery after cessation of fishing. We reviewed life history-based predictions about the vulnerability of different groups of coral reef fish and examined the empirical evidence for different rates of population recovery inside no-take marine reserves to (...

Well-designed and effectively managed networks of marine reserves can be effective tools for both fisheries management and biodiversity conservation. Connectivity, the demographic linking of local populations through the dispersal of individuals as larvae, juveniles or adults, is a key ecological factor to consider in marine reserve design, since i...

Systematic conservation planning increasingly underpins the conservation and management of marine and coastal ecosystems worldwide. Amongst other benefits, conservation planning provides transparency in decision-making, efficiency in the use of limited resources, the ability to minimise conflict between diverse objectives, and to guide strategic ex...

Systematic conservation planning increasingly underpins the conservation and management of marine and coastal ecosystems worldwide. Amongst other benefits, conservation planning provides transparency in decision-making, efficiency in the use of limited resources, the ability to minimise conflict between diverse objectives, and to guide strategic ex...

Systematic conservation planning increasingly underpins the conservation and management of marine and coastal ecosystems worldwide. Amongst other benefits, conservation planning provides transparency in decision-making, efficiency in the use of limited resources, the ability to minimise conflict between diverse objectives, and to guide strategic ex...

Systematic conservation planning increasingly underpins the conservation and management of marine and coastal ecosystems worldwide. Amongst other benefits, conservation planning provides transparency in decision-making, efficiency in the use of limited resources, the ability to minimise conflict between diverse objectives, and to guide strategic ex...

Overfishing and habitat destruction due to local and global threats are undermining fisheries, biodiversity, and the long-term sustainability of tropical marine ecosystems worldwide, including in the Coral Triangle. Well-designed and effectively managed marine reserve networks can reduce local threats, and contribute to achieving multiple objective...

Percentage of coral reef loss and declining reef area for all species of parrotfishes and surgeonfishes (1 = exclusively coral reef dependent, 2 = primarily found in coral reefs, 3 = mixed habitat). (PDF)

Major threats identified for each species of parrotfish and surgeonfish. (PDF)

Complete list of species, Red List Category and associated information on life history, dietary classification and presence in marine reserves. (PDF)

Parrotfishes and surgeonfishes perform important functional roles in the dynamics of coral reef systems. This is a consequence of their varied feeding behaviors ranging from targeted consumption of living plant material (primarily surgeonfishes) to feeding on detrital aggregates that are either scraped from the reef surface or excavated from the de...

The abundance of newly settled recruits of coral reef fishes was monitored at a total of 11 sites at two islands and two coastal locations in the central Philippines for a 20-month period (February 2008 to September 2009) that included two monsoon cycles. Recruitment occurred throughout the year. Most of the abundant species exhibited protracted re...

No-take marine reserves are expected to enhance coral reef resilience indirectly through suppression of algal growth and thus maintenance of coral dominance. The mechanism of such enhancement is protection of functionally important herbivorous fishes from harvest. We provide indirect (inferred) evidence of reserves performing this role. We used dat...

The contribution of the no-take marine reserve at Apo Island, Philippines, to local fishery yield through "spillover" (net export of adult fish) was estimated. Spatial patterns of fishing effort, yield, and catch rates around Apo Island were documented daily in 2003-2004. Catch rates were higher near the reserve (by a factor of 1.1 to 2.0), but fis...

1.An abundance gradient from high inside to low outside a no-take marine reserve may indicate net emigration of adult fish from the reserve (‘spillover’).2.We examined spatial patterns of abundance of fish across two ∼900 m long sections of coral reef slope at each of two small Philippine islands (Apo and Balicasag). One section sampled the entire...

Spillover, the net export of adult fish, is one mechanism by which no-take marine reserves may eventually have a positive influence on adjacent fisheries. Although evidence for spillover has increased recently, mechanisms inducing movement of adult fish from reserve to fished areas are poorly understood. While density-dependent export is a reasonab...