Ramakrishna Koppisetti

University of Missouri | Mizzou · Department of Biochemistry

Fluor-tagged protein intensities measured w/ and w/o liposomes.

I would like to calculate depth of insertion of a protein after MD simulations. Is there any references for this topic.

I'm trying to calculate center of mass of a free protein and COM of a complex.

We are working on bicelles. Which method is more reliable to determine the molecular weight for a complex with bicelles?

I tried to do MD refinement for a protein-membrane Bilayer complex by using Gromacs. In manual they mentioned only distance restraints between two atoms with in the molecule but here it is a complex with two molecules. Anyone could provide references to this topic is really appreciation.