Rahul Mallick

Rahul Mallick
University of Eastern Finland | UEF · A.I. Virtanen Institute for Molecular Sciences

MBBS; MSc

About

53
Publications
44,731
Reads
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693
Citations
Introduction
Rahul is currently working at A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, Finland. He finished his medical graduation from Chittagong University, Bangladesh and research master's degree in Experimental and Medical Biosciences from the department of clinical and experimental medicine (IKE), Linköping University, Sweden. He is interested on regenerative and translational medicine research.
Additional affiliations
January 2008 - November 2014
Chittagong Medical College
Position
  • Medical student
January 2018 - June 2018
Umeå University
Position
  • Master's Student
January 2017 - June 2017
Lund University
Position
  • Master's Student
Education
August 2016 - August 2018
Linköping University
Field of study
  • Experimental and Medical Biosciences
January 2008 - July 2013
Chittagong Medical College
Field of study
  • Medicine, Surgery and Gynaecology

Publications

Publications (53)
Article
Full-text available
Background Brain arteriovenous malformations (bAVM) may rupture causing disability or death. BAVM vessels are characterized by abnormally high flow that in general triggers expansive vessel remodeling mediated by cyclo-oxygenase-2 (COX2), the target of non-steroidal anti-inflammatory drugs. We investigated whether COX2 is expressed in bAVMs and whe...
Article
Full-text available
The dysregulation of fat metabolism is involved in various disorders, including neurodegenerative, cardiovascular, and cancers. The uptake of long-chain fatty acids (LCFAs) with 14 or more carbons plays a pivotal role in cellular metabolic homeostasis. Therefore, the uptake and metabolism of LCFAs must constantly be in tune with the cellular, metab...
Article
Full-text available
Atherosclerosis is a chronic inflammatory disease characterized by extensive remodeling of medium and large-sized arteries. Inward remodeling (=lumen shrinkage) of the vascular walls is the underlying cause for ischemia in target organs. Therefore, inward remodeling can be considered the predominant feature of atherosclerotic pathology. Outward rem...
Article
Full-text available
Background: Previous studies have indicated that vascular endothelial growth factor B186 (VEGF-B186) supports coronary vascular growth in normal and ischemic myocardium. However, previous studies also indicated that induction of ventricular arrhythmias is a severe side effect preventing the use of VEGF-B186 in cardiac gene therapy, possibly mediate...
Article
Full-text available
Growing evidence demonstrates the connection between gut microbiota, neurodevelopment, and adult brain function. Microbial colonization occurs before the maturation of neural systems and its association with brain development. The early microbiome interactions with the gut-brain axis evolved to stimulate cognitive activities. Gut dysbiosis can lead...
Preprint
Full-text available
Cytokine-mediated inflammation is becoming recognized as a vital role in the pathophysiology of a wide range of brain illnesses, including neurodegenerative, psychiatric, and neurodevelopmental problems. Pro-inflammatory cytokines such as interleukin-1 (IL-1), tumor necrosis factor-alpha (TNF-α), and interleukin- 6 (IL-6) cause neuroinflammation, a...
Article
Full-text available
Evidence is emerging on the role of maternal diet, gut microbiota, and other lifestyle factors in establishing lifelong health and disease, which are determined by transgenerationally inherited epigenetic modifications. Understanding epigenetic mechanisms may help identify novel biomarkers for gestation-related exposure, burden, or disease risk. Su...
Article
As the most versatile and precise gene editing technology, prime editing (PE) can establish a durable cure for most human genetic disorders. Several generations of PE have been developed based on an editor machine or prime editing guide RNA (pegRNA) to achieve any kind of genetic correction. However, due to the early stage of development, PE comple...
Book
Cellular, Molecular and Environmental Contribution in Cardiac Remodeling consolidates the most recent research advances on cellular, molecular, biochemical, and heterogeneous factors contributing to the physiological and pathological cardiac remodeling, elucidating their mechanisms of action and the clinical outcomes of cardiac remodeling. The book...
Article
Full-text available
Despite scientific development, cancer is still a fatal disease. The development of cancer is thought to be significantly influenced by fatty acids. Several mechanisms that control fatty acid absorption and metabolism are reported to be altered in cancer cells to support their survival. Cancer cells can use de novo synthesis or uptake of extracellu...
Article
Full-text available
Abstract: Changes in gene expression are involved in many brain functions. Epigenetic processes modulate gene expression by histone modification and DNA methylation or RNA-mediated processes, which is important for brain function. Consequently, epigenetic changes are also a part of brain diseases such as mental illness and addiction. Understanding...
Article
Full-text available
Chronic low-grade adipose tissue inflammation is associated with metabolic disorders. Inflammation results from the intertwined cross-talks of pro-inflammatory and anti-inflammatory pathways in the immune response of adipose tissue. In addition, adipose FABP4 levels and lipid droplet proteins are involved in systemic and tissue inflammation. Dysreg...
Article
Full-text available
Coronary heart disease (CHD) is the leading cause of death around the world. Based on the roles of vascular endothelial growth factor (VEGF) family members to regulate blood and lymphatic vessels and metabolic functions, several therapeutic approaches have been attempted during the last decade. However proangiogenic therapies based on classical VEG...
Chapter
Cytoplasmic fatty acid-binding proteins (FABPs) are multipurpose proteins that can modulate lipid fluxes, trafficking, signaling, and metabolism. FABPs regulate metabolic and inflammatory pathways, its inhibition can improve type 2 diabetes mellitus and atherosclerosis. In addition, FABPs are involved in obesity, metabolic disease, cardiac dysfunct...
Article
Full-text available
The endothelium acts as the barrier that prevents circulating lipids such as lipoproteins and fatty acids into the arterial wall; it also regulates normal functioning in the circulatory system by balancing vasodilation and vasoconstriction, modulating the several responses and signals. Plasma lipids can interact with endothelium via different mecha...
Article
Full-text available
Vascular endothelial growth factor B (VEGF-B) is an interesting therapeutic candidate for coronary artery disease. However, it can also cause ventricular arrhythmias, potentially preventing its use in clinics. We cloned VEGF-B isoforms with different receptor binding profiles to clarify the roles of VEGFR-1 and Nrp-1 in angiogenesis and to see if a...
Article
Full-text available
Cancer cells survive and grow despite various advanced anti-cancer therapy. To overcome this antineoplastic resistance, adjuvant therapy is often required to prevent cancer cells' immunoescape capacity. Established tumors build a stressful and hostile microenvironment in order to escape protective innate and adaptive immune responses. Specific cond...
Article
Full-text available
Citation: Basak, S.; Mallick, R.; Banerjee, A.; Pathak, S.; Duttaroy, A.K. Maternal Supply of Both Arachidonic and Docosahexaenoic Acids Is Required for Optimal Neurodevelopment. Nutrients 2021, 13, 2061. https://doi. Abstract: During the last trimester of gestation and for the first 18 months after birth, both docosahexaenoic acid,22:6n-3 (DHA) an...
Preprint
Full-text available
During the last trimester of gestation and for the first 18 months after birth, both docosahexaenoic acid,22:6n-3 (DHA) and arachidonic acid,20:4n-6 (ARA) are preferentially deposited within the cerebral cortex at a rapid rate. Although, the structural and functional roles of DHA in brain development are well investigated, similar roles of ARA are...
Preprint
Full-text available
During the last trimester of gestation and for the first 18 months after birth, docosahexaenoic acid,22:6n-3 (DHA) and arachidonic acid,20:4n-6 (ARA) deposited within the cerebral cortex at a rapid rate. The mode of action of these two fatty acids and their derivatives at different structural-function and signaling pathways levels in the brain have...
Article
Full-text available
Dietary components are essential for the structural and functional development of the brain. Among these, docosahexaenoic acid, 22:6n-3 (DHA), is critically necessary for the structure and development of the growing fetal brain in utero. DHA is the major n-3 long-chain polyunsaturated fatty acid in brain gray matter representing about 15% of all fa...
Article
Full-text available
Coronaviruses are a group of enveloped viruses with non-segmented, single-stranded, and positive-sense RNA genomes. Human coronavirus infection causes respiratory diseases with mild to severe outcomes. In December 2019, a new outbreak of the novel coronavirus disease 2019 (COVID-19) emerged in Wuhan, China and spread around the world. Genomic analy...
Article
Full-text available
Copper (Cu) is an essential micronutrient for both pathogens and the hosts during viral infection. Cu is involved in the functions of critical immune cells such as T helper cells, B cells, neutrophils natural killer (NK) cells, and macrophages. These blood cells are involved in the killing of infectious microbes, in cell-mediated immunity and the p...
Chapter
Full-text available
Introduction: A recent rapid outbreak of infection around the globe has been caused by a novel coronavirus, now known as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which was first identified in December 2019 in Wuhan city of Hubei province, People's Republic of China. Methods: We reviewed the currently available literature on...
Chapter
Full-text available
Introduction: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)-associated coronavirus pandemic has posed a global health emergency. Methods: This chapter focuses on the epidemiology and transmission immunopathology of SARS-CoV-2 infection based on the available data on SARS-CoV-2 and other coronaviruses. Results: The virus is trans...
Chapter
Full-text available
Introduction: Severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2)-associated coronavirus pandemic has posed a global health emergency. Methods: We focused on clinical features, diagnostic evaluation, management, infection prevention, and safe handling of deceased bodies with suspected and confirmed COVID-19. Results: The case...
Article
Full-text available
Docosahexaenoic acid,22:6n-3 (DHA) and its metabolites are vital for the structure and functional brain development of the fetus and infants, and also for maintenance of healthy brain function of adults. DHA is thought to be an essential nutrient required throughout the life cycle for the maintenance of overall brain health. The mode of actions of...
Article
Full-text available
Docosahexaenoic acid,22:6n-3 (DHA) and its metabolites are vital for the structure and functional brain development of the fetus and infants, and also for maintenance of healthy brain function of adults. DHA is thought to be an essential nutrient required throughout the life cycle for the maintenance of overall brain health. The mode of actions of...

Questions

Questions (8)
Question
I have 6 groups, one control group and 5 treatment groups that have nothing to do with each other. I just want to see if any of those 5 treatment are different from the control group.
It is recommended to use ANOVA to avoid type-1 errors. In t-test, the chance of error increases. Being that have no interest in differences between the treatment groups, by doing an ANOVA can it not be misleading?
So, should I do an ANOVA followed by Dunnett's multiple comparison or Fisher's LSD? Or just do the multiple t-tests?
Question
Can anyone guide me how to extract the publicly available deposited data (fastq format) in the Gene Expression Omnibus (GEO)? And is this possible to convert the files into tar format to use on Seurat v3?
Question
I would like to see RNA-protein interaction following transcription process inside the cell. I am wondering if there is any protocol similar to protein co-immunoprecipitation,which can bind the bead with RNA followed by detection of RNA-bound protein through gel electrophoresis?
Question
I am working with PPI network of Alzheimer's disease (AD) and type II Diabetes Mellitus (DM) . But I am facing difficulties to retrieve all risk genes predisposing to AD and DM. Some literature have focused on GWAS database, some have focused on candidate genes. Which method should I need to follow?
Question
I have transformed my cloned plasmid DNA into bacteria and cultured bacteria. Then, I extracted DNA from bacteria and run in 0.5% agarose gel. But I am not seeing any DNA band except ladder.
(In nanodrop, the conc. was 86ng/microliter, but 260/280 ratio was 1.62)
To check the gel, I had run another DNA besides this DNA. But I found the band of another DNA.
What could be the problem?

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