Philipp Ernst

Otto-von-Guericke-Universität Magdeburg | OvGU · Department of Technical & Operational Information Systems (ITI)

Computed tomography (CT) and magnetic resonance imaging (MRI) are two widely used clinical imaging modalities for non-invasive diagnosis. However, both of these modalities come with certain problems. CT uses harmful ionising radiation, and MRI suffers from slow acquisition speed. Both problems can be tackled by undersampling, such as sparse samplin...

Iterative undersampled MRI reconstructions, such as compressed sensing, can reconstruct undersampled MRIs - but due to their slow execution speed, they are not suitable for real-time applications. Several deep learning approaches have been proposed, mostly working in image space. Some of the approaches, which work on the k-space or in a mix of spac...

In this paper, the Primal-Dual UNet for sparse view CT reconstruction is modified to be applicable to cone beam projections and perform reconstructions of entire volumes instead of slices. Experiments show that the PSNR of the proposed method is increased by 10dB compared to the direct FDK reconstruction and almost 3dB compared to the modified orig...

In this paper, the Primal-Dual UNet for sparse view CT reconstruction is modified to be applicable to cone beam projections and perform reconstructions of entire volumes instead of slices. Experiments show that the PSNR of the proposed method is increased by 10dB compared to the direct FDK reconstruction and almost 3dB compared to the modified orig...

The C-arm Cone-Beam Computed Tomography (CBCT) increasingly plays a major role in interventions and radiotherapy. However, the slow data acquisition and high dose hinder its predominance in the clinical routine. To overcome the high-dose issue, various protocols such as sparse-view have been proposed, where a subset of projections is acquired over...

This paper proposes an extension to the Dual Branch Prior-Net for sparse view interven-tional CBCT reconstruction incorporating a high quality planning scan. An additional head learns to segment interventional instruments and thus guides the reconstruction task. The prior scans are misaligned by up to ±5deg in-plane during training. Experiments sho...

The C-arm Cone-Beam Computed Tomography (CBCT) increasingly plays a major role in interventions and radiotherapy. However, the slow data acquisition and high dose hinder its predominance in the clinical routine. To overcome the high-dose issue, various protocols such as sparse-view have been proposed, where a subset of projections is acquired over...

CT and MRI are two widely used clinical imaging modalities for non-invasive diagnosis. However, both of these modalities come with certain problems. CT uses harmful ionising radiation, and MRI suffers from slow acquisition speed. Both problems can be tackled by undersampling, such as sparse sampling. However, such undersampled data leads to lower r...

Purpose Development and performance measurement of a fully automated pipeline that localizes and segments the locus coeruleus in so-called neuromelanin-sensitive magnetic resonance imaging data for the derivation of quantitative biomarkers of neurodegenerative diseases such as Alzheimer’s disease and Parkinson’s disease. Methods We propose a pipel...

Pulmonary cancer is one of the most commonly diagnosed and fatal cancers and is often diagnosed by incidental findings on computed tomography. Automated pulmonary nodule detection is an essential part of computer-aided diagnosis, which is still facing great challenges and difficulties to quickly and accurately locate the exact nodules' positions. T...

Pulmonary cancer is one of the most commonly diagnosed and fatal cancers and is often diagnosed by incidental findings on computed tomography. Automated pulmonary nodule detection is an essential part of computer-aided diagnosis, which is still facing great challenges and difficulties to quickly and accurately locate the exact nodules' positions. T...

In this paper, we present a method for removing streak artifacts from reconstructions of sparse cone beam CT (CBCT) projections along circular trajectories. The differentiated backprojection on 2-D planes is combined with convolutional neural networks for both artifact reduction and the ill-posed inversion of the Hilbert transform. Undersampling er...

In this paper, we present an approach based on a combination of convolutional neural networks and analytical algorithms to interpolate between neighboring conebeam projections for upsampling along circular trajectories. More precisely, networks are trained to interpolate the angularly centered projection between the input projections of different a...

Segmentation of abdominal organs has been a comprehensive, yet unresolved, research field for many years. In the last decade, intensive developments in deep learning (DL) introduced new state-of-the-art segmentation systems. Despite outperforming the overall accuracy of existing systems, the effects of DL model properties and parameters on the perf...

[https://arxiv.org/abs/2001.06535] Segmentation of abdominal organs has been a comprehensive, yet unresolved, research field for many years. In the last decade, intensive developments in deep learning (DL) have introduced new state-of-the-art segmentation systems. Despite outperforming the overall accuracy of existing systems, the effects of DL mod...

Introduction: Reconstructions are of low visual quality in few-view CT. Deep learning helps to improve these yet acts as a black box and depends on the reconstruction method. However, the explainability can be increased when directly applied to interpolate views in projection space. Materials & Methods: Different interpolation methods to upsample...

The extraction of spines from medical records in a fast yet accurate way is a challenging task, especially for large data sets. Addressing this issue, we present a framework based on convolutional neural networks for the reconstruction of the spinal shape and curvature, making statistical assessments feasible on epidemiological scale. Our method us...

Introduction: Reconstructions are of low visual quality in few-view CT. Deep learning helps to improve these yet acts as a black box and depends on the reconstruction method. However, the explainability can be increased when directly applied to interpolate views in projection space. Materials & Methods: Different interpolation methods to upsample p...

The extraction of spines from medical records in a fast yet accurate way is a challenging task, especially for large data sets. Addressing this issue, we present a framework based on convolutional neural networks for the reconstruction of the spinal shape and curvature, making statistical assessments feasible on epidemiological scale. Our method us...

Short description of the method used for CHAOS Challenge.