Peter H van Tienderen

University of Amsterdam | UVA · Faculty of Science

Though polyploidy is an important aspect of the evolutionary genetics of both plants and animals, the development of population genetic theory of polyploids has seriously lagged behind that of diploids. This is unfortunate since the analysis of polyploid genetic data -and the interpretation of the results- requires even more scrutiny than with dipl...

Global climate change is predicted to increase water precipitation fluctuations and lead to localized prolonged floods in agricultural fields and natural plant communities. Thus, understanding the genetic basis of submergence tolerance is crucial in order to improve plant survival under these conditions. In this study, we performed a quantitative t...

In this research, we isolated three CBF (C-repeat-Binding Factors) genes from two genotypes of Boechera stricta with contrasting freezing tolerance and characterized their structure and expression patterns in response to cold treatment. An amino acid sequence comparison revealed that the CBF genes in B. stricta showed high conservation in the AP2 d...

Climate change has increased the frequency and severity of flooding events with significant negative impact on agricultural productivity. These events often submerge plant aerial organs and roots, limiting growth and survival due to a severe reduction in light reactions and gas exchange necessary for photosynthesis and respiration, respectively. To...

Cultivated lettuce is more sensitive to salinity stress than its wild progenitor species potentially due to differences in root architecture and/or differential uptake and accumulation of sodium. We have identified quantitative trait locis (QTLs) associated with salt-induced changes in root system architecture (RSA) and ion accumulation using a rec...

Development of chilling and freezing tolerance is complex and can be affected by photoperiod, temperature and photosynthetic performance; however, there has been limited research on the interaction of these three factors. We evaluated 108 recombinant inbred lines of Boechera stricta, derived from a cross between lines originating from Montana and C...

The development of stress-tolerant crops is an increasingly important goal of current crop breeding. A higher abiotic stress tolerance could increase the probability of introgression of genes from crops to wild relatives. This is particularly relevant to the discussion on the risks of new GM crops that may be engineered to increase abiotic stress r...

Flooding events negatively affect plant performance and survival. Flooding gradients thereby determine dynamics in vegetation composition and species abundance. In adaptation to flooding, the group VII Ethylene Response Factor genes (ERF-VIIs) play pivotal roles in rice and Arabidopsis through regulation of anaerobic gene expression and antithetica...

Invasive plants can have a major impact on local plant and animal communities. However, effects of plant invasions on arthropod communities and the potential drivers have rarely been studied.We present a meta-analysis of 56 studies on the impact of plant invasions on abundance and richness of local arthropod communities. Moreover, we study the role...

Complete submergence represses photosynthesis and aerobic respiration causing rapid mortality in most terrestrial plants. However, some plants have evolved traits allowing them to survive prolonged flooding, such as species of the genus Rorippa, close relatives of Arabidopsis. We studied plant survival, changes in carbohydrate and metabolite concen...

The evolutionary significance of introgression has been discussed for decades. Questions about potential impacts of transgene flow into wild and weedy populations brought renewed attention to the introgression of crop alleles into those populations. In the past two decades, the field has advanced with considerable descriptive, experimental, and the...

Genomic selection patterns and hybrid performance influence the chance that crop (trans)genes can spread to wild relatives. We measured fitness(-related) traits in two different field environments employing two different crop-wild crosses of lettuce. We performed quantitative trait loci (QTL) analyses and estimated the fitness distribution of early...

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Biodiversity informatics plays a central enabling role in the research community's efforts to address scientific conservation and sustainability issues. Great strides have been made in the past decade establishing a framework for sharing data, where taxonomy and systematics has been perceived as the most prominent discipline involved. To some exten...

The genetic architecture of crop domesti-cation is generally characterized by three trends: relatively few genomic regions with major QTL effects are involved, QTL are often clustered, and alleles derived from the crop do not always contribute to the crop phenotype. We have investigated the genetic architecture of lettuce using a recombinant inbred...

Polyploids are traditionally classified into allopolyploids and autopolyploids, based on their evolutionary origin and their disomic or multisomic mode of inheritance. Over the past decade it has become increasingly clear that there is a continuum between disomic and multisomic inheritance, with the rate of tetrasomy differing among species and amo...

Greenhouses are a well-accepted containment strategy to grow and study genetically modified plants (GM) before release into the environment. Various containment levels are requested by national regulations to minimize GM pollen escape. We tested the amount of pollen escaping from a standard greenhouse, which can be used for EU containment classes 1...

Many crops contain domestication genes that are generally considered to lower fitness of crop-wild hybrids in the wild environment. Transgenes placed in close linkage with such genes would be less likely to spread into a wild population. Therefore, for environmental risk assessment of GM crops, it is important to know whether genomic regions with s...

With the development of transgenic crop varieties, crop–wild hybridization has received considerable consideration with regard to the potential of transgenes to be transferred to wild species. Although many studies have shown that crops can hybridize with their wild relatives and that the resulting hybrids may show improved fitness over the wild pa...

Differential responses of closely related species to submergence can provide insight into the evolution and mechanisms of submergence tolerance. Several traits of two wetland species from habitats with contrasting flooding regimes, Rorippa amphibia and Rorippa sylvestris, as well as F(1) hybrid Rorippa × anceps were analysed to unravel mechanisms u...

Endemic genera on oceanic islands often evolved striking morphological and ecological differences among species, with weak postzygotic reproductive isolation. Human activities can lead to increased connectivity and can thereby promote secondary contact and hybridization between pre-viously isolated species. We studied this phenomenon in three speci...

After crop-wild hybridization, some of the crop genomic segments may become established in wild populations through selfing of the hybrids or through backcrosses to the wild parent. This constitutes a possible route through which crop (trans)genes could become established in natural populations. The likelihood of introgression of transgenes will no...

Below is the link to the electronic supplementary material. Figure S1. Crossing and experimental scheme of the study on introgression process from cultivated to wild lettuce. The backcrossing pathway (BC1 and BC2 populations) is the subject of this study. Figure S2. Allelic composition of the selected BC1 (A) and BC2 (B) genotypes. Blue: homozygous...

In 2010, the international year of biodiversity, new policies for preserving biodiversity in Europe and worldwide will be developed as targets set by older policies, such as to halt biodiversity loss in the EU by 2010, were not met. This paper aims at sharing the expertise LERU’s members harbour to set the right priorities for new biodiversity poli...

Unlabelled: Premise of the study: Most plants are polyploid and have more than two copies of the genome. The evolutionary success of polyploids is often attributed to their potential to harbor increased genetic variation, but it is poorly understood how polyploids can attain such variation. Because of their formation bottleneck, newly formed tet...

In their recent article, Albertin et al. (2009) suggest an autotetraploid origin of 10 tetraploid strains of baker's yeast (Saccharomyces cerevisiae), supported by the frequent observation of double reduction meiospores. However, the presented inheritance results were puzzling and seemed to contradict the authors' interpretation that segregation ra...

The river floodplain species Rorippa amphibia, Rorippa sylvestris, and their hybrid Rorippa x anceps were studied here, with the aim of identifying potential species differences with respect to flooding tolerance, and of assessing their expression in F1 hybrids. Parents and their F1 hybrids were subjected to three flooding treatments mimicking natu...

Tetraploid inheritance has two extremes: disomic in allotetraploids and tetrasomic in autotetraploids. The possibility of mixed, or intermediate, inheritance models has generally been neglected. These could well apply to newly formed hybrids or to diploidizing (auto)tetraploids. We present a simple likelihood-based approach that is able to incorpor...

Part of a large male woolly mammoth (Mammuthus primigenius) was preserved in permafrost in northern Yakutia. It was radiocarbon dated to ca. 18,500 14C yr BP (ca. 22,500 cal yr BP). Dung from the lower intestine was subjected to a multiproxy array of microscopic, chemical, and molecular techniques to reconstruct the diet, the season of death, and t...

The frequency of polyploidy increases with latitude in the Northern Hemisphere, especially in deglaciated, recently colonized areas. The cause or causes of this pattern are largely unknown, but a greater genetic diversity of individual polyploid plants due to a doubled genome and/or a hybrid origin is seen as a likely factor underlying selective ad...

Climate change has led to an advance in phenology in many species. Synchrony in phenology between different species within a food chain may be disrupted if an increase in temperature affects the phenology of the different species differently, as is the case in the winter moth egg hatch–oak bud burst system. Operophtera brumata (winter moth) egg hat...

We measured morphological characters and relative DNA contents to assess variation and phylogenetic relationships among Serapias species in three populations of each of the 10 putative taxa that occur in Southwest Europe. DNA contents indicated diploidy for most species, except for tetraploid S. lingua and hexaploid S. olbia. Multivariate (discrimi...

We isolated 12 highly conserved polymorphic microsatellite loci for the yellow-cress species Rorippa amphibia and Rorippa sylvestris. We used a partial genomic library enriched for several repeat motifs. Obtained sequences containing repetitive elements were blasted and aligned with the Arabidopsis thaliana sequence. We evaluated the cross-species...

Male reproductive output, pollen in plants and sperm in animals has been shown to constitute a substantial cost for many organisms. In parthenogenetic hermaphrodites, selection is therefore expected to reduce the allocation of resources to male reproductive output. However, sustained production of pollen or sperm has been observed in numerous asexu...

A joint demographic and population genetics stage-based model for a subdivided population was applied to Gentiana pneumonanthe, an early successional perennial herb, at a regional (metapopulation) scale. We used numerical simulations to determine the optimal frequency of habitat disturbance (sod cutting) and the intensity of gene flow among populat...

The growth habit of the rosette plant Plantago lanceolata is highly variable, and many vegetative and reproductive traits co-vary. At one end of the range plants have relatively few but long and erect leaves, form few daughter rosettes, and produce a limited number of large spikes, with relatively heavy seeds. Plants at the other end of the range h...

Hybrids provide a unique opportunity to study ecological differentiation. The naturally hybridizing Yellow Cress species Rorippa amphibia (RA) and R. sylvestris (RS) occupy different habitats: RA grows in sites with more stable water tables (eg oxbow lakes), mostly as emergent plants, while RS occurs in temporarily submerged sites (eg river floodpl...

Investigating diversity in asexual organisms using molecular markers involves the assignment of individuals to clonal lineages and the subsequent analysis of clonal diversity. Assignment is possible using a distance matrix in combination with a user-specified threshold, defined as the maximum distance between two individuals that are considered to...

Male-sterility was found in diploid dandelions from two widely separated populations from France, and its inheritance was analysed by crossing a diploid male-sterile dandelion to diploid sexuals and triploid apomicts. Nuclear genetic variation, found in full-sib families, segregated for male-fertility, partial male-sterility, and full male-sterilit...

The genetic basis of phenotypic plasticity of relative growth rate (RGR), its components and associated morphological traits was studied in relation to nutrient limitation. In all, 140 F(3) lines from a cross, made between two Hordeum spontaneum (wild barley) accessions sampled in Israel, were subjected to growth analysis under two nutrient levels....

The Resource Availability Hypothesis (RAH) states that plants with a low Relative Growth Rate (RGR) and high levels of defence against herbivores or pathogens are favoured in habitats with low resource availability, whereas plants with a high potential RGR and low levels of defence are favoured in environments with high resource availability. High...

We developed microsatellites for the bromeliads Tillandsia fasciculata and Guzmania monostachya, epiphytes of Central-American montane rain forests. Fragments obtained using amplified fragment length polymorphism (AFLP) pre-amplification were enriched by hybridization with biotin-labelled repeat sequences, and subsequently cloned and sequenced. Pri...

1 The genetic basis of phenotypic plasticity in relative growth rate (RGR) and its components was studied in Hordeum spontaneum (wild barley). Four accessions from each of nine natural populations from Israel and Iran were grown at four nutrient levels. Genetic variation in RGR and its components, differences in phenotypic plasticity, and interacti...