Pauliina Salmi

Pauliina Salmi
University of Jyväskylä | JYU · Faculty of Information Technology

Doctor of Philosophy
measurements and data, remote sensing and green innovations

About

36
Publications
14,614
Reads
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680
Citations
Introduction
I am a researcher with interest in remote sensing, measurement and information technology, green biotechnology, environmental change and sustainability.
Additional affiliations
September 2019 - August 2022
University of Jyväskylä
Position
  • PostDoc Position
September 2019 - August 2022
University of Jyväskylä
Position
  • PostDoc Position
August 2017 - October 2018
University of Jyväskylä
Position
  • Lecturer

Publications

Publications (36)
Preprint
Commercial cultivation of the microalgae Haematococcus pluvialis to produce natural astaxanthin has gained significant traction due to the high antioxidant capacity of this pigment and its application in foods, feed, cosmetics and nutraceuticals. However, monitoring of astaxanthin content in cultures remains challenging and relies on invasive, time...
Article
Full-text available
High expectations are placed on microalgae as a sustainable source of valuable biomolecules. Robust methods to control microalgae cultivation processes are needed to enhance their efficiency and, thereafter, increase the profitability of microalgae-based products. To meet this need, a non-invasive monitoring method based on a hyperspectral imager w...
Article
Motivated by the need for rapid and robust monitoring of phytoplankton in inland waters, this article introduces a protocol based on a mobile spectral imager for assessing phytoplankton pigments from water samples. The protocol includes (1) sample concentrating; (2) spectral imaging; and (3) convolutional neural networks (CNNs) to resolve concentra...
Article
Full-text available
Eutrophication, i.e. increasing level of nutrients and primary production, is a central environmental change of lakes globally with wide effects on food webs. However, how eutrophication affects the synthesis of physiologically essential biomolecules (omega-3 fatty acids) and their transfer to higher trophic levels at the whole food web level is no...
Article
Temperature increases driven by climate change are expected to decrease the availability of polyunsaturated fatty acids in lakes worldwide. Nevertheless, a comprehensive understanding of the joint effects of lake trophic status, nutrient dynamics and warming on the availability of these biomolecules is lacking. Here, we conducted a laboratory exper...
Article
Full-text available
Chemotaxonomic biomarkers are needed to monitor and evaluate the nutritional quality of phytoplankton communities. The biomolecules produced by different phytoplankton species do not always follow genetic phylogeny. Therefore, we analyzed fatty acids, sterols, and carotenoids from 57 freshwater phytoplankton strains to evaluate the usability of the...
Preprint
Full-text available
Microbial communities often respond to various challenges, such as the presence of antibiotics, as a whole. Dissecting these community-level effects into separate acting entities requires the identification of organisms that carry functional genes for the observed feature. However, unculturable microbes abound in various environments, hence making...
Article
Full-text available
Light availability is the main regulator of primary production, shaping photosynthetic communities and their production of ecologically important biomolecules. In freshwater ecosystems, increasing dissolved organic carbon concentrations, commonly known as browning, leads to lower light availability and the proliferation of mixotrophic phytoplankton...
Article
Full-text available
Effective monitoring of microalgae growth is crucial for environmental observation, while the applications of this monitoring could also be expanded to commercial and research-focused microalgae cultivation. Currently, the distinctive optical properties of different microalgae groups are targeted for monitoring. Since different microalgae can grow...
Article
Full-text available
To determine the drivers of phytoplankton biomass, we collected standardized morphometric, physical, and biological data in 230 lakes across the Mediterranean, Continental, and Boreal climatic zones of the European continent. Multilinear regression models tested on this snapshot of mostly eutrophic lakes (median total phosphorus [TP] = 0.06 and tot...
Article
Full-text available
Present practices in the microscopic counting of phytoplankton to estimate the reliability of results rely on the assumption of a random distribution of taxa in sample preparations. In contrast to that and in agreement with the literature, we show that aggregated distribution is common and can lead to over-optimistic confidence intervals, if estima...
Article
Full-text available
Microplastics (MPs) from households, stormwater, and various industries are transported to wastewater treatment plants (WWTPs), where a high proportion of them are captured before discharging their residuals to watersheds. Although recent studies have indicated that the removed MPs are mainly retained in wastewater sludge, sludge treatment processe...
Article
Full-text available
The abundance of microplastics (MPs) in the atmosphere, on land, and especially in water bodies is well acknowledged. In this study, we establish an optical method based on three different techniques, namely, specular reflection to probe the medium, transmission spectroscopy measurements for the detection and identification, and a speckle pattern f...
Article
Full-text available
Thus far, the phytoplankton community composition analyses, used e.g. monitoring and assessment of the ecological status of water bodies, are based on time-consuming and expertise-demanding light microscopy analyses. Currently, DNA-based molecular tools are being developed to replace microscopy-based analyses. Although most of the DNA is expected t...
Article
Full-text available
Spectral cameras are traditionally used in remote sensing of microalgae, but increasingly also in laboratory-scale applications, to study and monitor algae biomass in cultures. Practical and cost-efficient protocols for collecting and analyzing hyperspectral data are currently needed. The purpose of this study was to test a commercial, easy-to-use...
Article
Full-text available
Organic matter (OM) other than living phytoplankton is known to affect fluorometric in situ assessments of chlorophyll in lakes. For this reason, calibrating fluorometric measurements for OM error is important. In this study, chlorophyll (Chl) fluorescence was measured in situ in multiple Finnish lakes using two sondes equipped with Chl fluorometer...
Article
Full-text available
Phytoplankton synthesizes essential ω-3 and ω-6 polyunsaturated fatty acids (PUFA) for consumers in the aquatic food webs. Only certain phytoplankton taxa can synthesize eicosapentaenoic (EPA; 20:5ω3) and docosahexaenoic acid (DHA; 22:6ω3), whereas all phytoplankton taxa can synthesize shorter-chain ω-3 and ω-6 PUFA. Here, we experimentally studied...
Article
Full-text available
The composition of phytoplankton community is the basis for environmental monitoring and assessment of the ecological status of aquatic ecosystems. Community composition studies of phytoplankton have been based on time-consuming and expertise-demanding light microscopy analyses. Molecular methods have the potential to replace microscopy, but the hi...
Article
Full-text available
Under ongoing climate change and increasing anthropogenic activity, which continuously challenge ecosystem resilience, an in-depth understanding of ecological processes is urgently needed. Lakes, as providers of numerous ecosystem services, face multiple stressors that threaten their functioning. Harmful cyanobacterial blooms are a persistent probl...
Article
Full-text available
Insight into how environmental change determines the production and distribution of cyanobacterial toxins is necessary for risk assessment. Management guidelines currently focus on hepatotoxins (microcystins). Increasing attention is given to other classes, such as neurotoxins (e.g., anatoxin-a) and cytotoxins (e.g., cylindrospermopsin) due to thei...
Article
Full-text available
Insight into how environmental change determines the production and distribution ofcyanobacterial toxins is necessary for risk assessment. Management guidelines currently focus onhepatotoxins (microcystins). Increasing attention is given to other classes, such as neurotoxins (e.g.,anatoxin-a) and cytotoxins (e.g., cylindrospermopsin) due to their p...
Article
The xenobiotic priority pollutant pentachlorophenol has been used as a timber preservative in a polychlorophenol bulk synthesis product containing also tetrachlorophenol and trichlorophenol. Highly soluble chlorophenol salts have leaked into groundwater, causing severe contamination of large aquifers. Natural attenuation of higher-chlorinated pheno...
Article
Under ongoing climate change and increasing anthropogenic activity, which continuously challenge ecosystem resilience, an in-depth understanding of ecological processes is urgently needed. Lakes, as providers of numerous ecosystem services, face multiple stressors that threaten their functioning. Harmful cyanobacterial blooms are a persistent probl...
Article
Full-text available
Phytoplankton is the basis for aquatic food webs and mirrors the water quality. Conventionally, phytoplankton analysis has been done using time consuming and partly subjective microscopic observations, but next generation sequencing (NGS) technologies provide promising potential for rapid automated examination of environmental samples. Because many...
Article
The development of phytoplankton biomass and composition in a eutrophic boreal lake was studied during the evolution of under-ice convection in spring. The results from 8 yr showed that, within a few weeks before ice-break, phytoplankton biomass regularly increased by up to two or three orders of magnitude, reaching or exceeding the biomass in summ...
Article
A small range (∼ 1°C) of under-ice water temperature is shown to result in remarkably different circulation regimes under spring ice in a deep, oligotrophic boreal lake. With the water column at < 4°C, melting of snow led to deepening vertical convection before ice break and a final depth of convection inversely correlated with earlier deep-water t...
Article
We studied the development of autotrophic picophytoplankton and heterotrophic bacterioplankton during the transition from winter ice cover to open water under natural and manipulated mixing conditions in eutrophic Lake Vesijärvi. During the melting of the snow and ice cover, a convection layer developed which eventually met the chemocline at the in...
Article
To mitigate deep water oxygen depletion and its consequences, epilimnetic water was pumped into deep water of a eutrophic, 26 km2 subbasin of Lake Vesijärvi, Finland. In winter, the mechanical mixing largely eliminated vertical differences in temperature, oxygen, and nutrients. Although ice cover prevented oxygen flux from the atmosphere, the high...
Article
To mitigate deep water oxygen depletion and its consequences, epilimnetic water was pumped into deep water of a eutrophic, 26 km2 subbasin of Lake Vesijärvi, Finland. In winter, the mechanical mixing largely eliminated vertical differences in temperature, oxygen, and nutrients. Although ice cover prevented oxygen flux from the atmosphere, the high...
Article
Full-text available
A small range (, 1uC) of under-ice water temperature is shown to result in remarkably different circulation regimes under spring ice in a deep, oligotrophic boreal lake. With the water column at , 4uC, melting of snow led to deepening vertical convection before ice break and a final depth of convection inversely correlated with earlier deep-water t...

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