Paul M. Thompson

University of Aberdeen | ABDN · Institute of Biological and Environmental Sciences

Mercury (Hg) is a heterogeneously distributed toxicant affecting wildlife and human health. Yet, the spatial distribution of Hg remains poorly documented, especially in food webs, even though this knowledge is essential to assess large-scale risk of toxicity for the biota and human populations. Here, we used seabirds to assess, at an unprecedented...

Many man-made marine structures (MMS) will have to be decommissioned in the coming decades. While studies on the impacts of construction of MMS on marine mammals exist, no research has been done on the effects of their decommissioning. The complete removal of an oil and gas platform in Scotland in 2021 provided an opportunity to investigate the res...

Fisheries waste is used by many seabirds as a supplementary source of food, but interacting with fishing vessels to obtain this resource puts birds at risk of entanglement in fishing gear and mortality. As a result, bycatch is one of the leading contributors to seabird decline worldwide, and this risk may increase over time as birds increasingly as...

Area-restricted search (ARS) behaviour is commonly used to characterize spatio-temporal variation in foraging activity of predators, but evidence of the drivers underlying this behaviour in marine systems is sparse. Advances in underwater sound recording techniques and automated processing of acoustic data now provide opportunities to investigate t...

The offshore renewable energy sector has grown rapidly in recent years. Floating Offshore Wind (FOW) will add significant additional capacity soon, but questions remain regarding long-term environmental impacts which could prove problematic for consenting. For example, given typical turbine lifespans up to 30 years, operational turbine noise emissi...

Mitigation measures to disperse marine mammals prior to pile-driving include acoustic deterrent devices and piling soft starts, but their efficacy remains uncertain. We developed a self-contained portable hydrophone cluster to detect small cetacean movements from the distributions of bearings to detections. Using an array of clusters within 10 km o...

Results are presented of acoustic measurements made during the disposal of 54 items of unexploded ordnance (UXO) in the North Sea during the pre-construction phase of two offshore windfarms. The disposals were conducted using high-order controlled detonation of donor charges placed on the seabed adjacent to the UXOs. The total charge masses ranged...

With increasing numbers of offshore structures being installed and decommissioned, a better understanding of their effect on marine predators is timely. There is some evidence that oil and gas platforms may attract marine mammals, acting as artificial reefs. However, it is unclear whether different man-made structure designs have similar effects or...

The biodiversity of marine and coastal habitats is experiencing unprecedented change. While there are well-known drivers of these changes, such as overexploitation, climate change and pollution, there are also relatively unknown emerging issues that are poorly understood or recognized that have potentially positive or negative impacts on marine and...

Marine predator populations are crucial to the structure and functioning of ecosystems. Like many predator taxa, pinnipeds face an increasingly complex array of natural and anthropogenic threats. Understanding the relationship between at-sea processes and trends in abundance at land-based monitoring sites requires robust estimates of at-sea distrib...

Given the patchiness and long-term predictability of marine resources, memory of high-quality foraging grounds is expected to provide fitness advantages for central place foragers. However, it remains challenging to characterize how marine predators integrate memory with recent prey encounters to adjust fine-scale movement and use of foraging patch...

Abstract Data on sex ratios, age classes, reproductive success and health status are key metrics to manage populations, yet can be difficult to collect in wild cetacean populations. Long‐term individual‐based studies provide a unique opportunity to apply unoccupied aerial system (UAS) photogrammetry to non‐invasively measure body morphometrics of i...

Habitat-use and distribution models are essential tools of conservation biology. For wide-ranging species, such models may be challenged by the expanse, remoteness and variability of their habitat, these challenges often being compounded by the species’ mobility. In marine environments, direct observations and sampling are usually impractical over...

Supplementary data to "Six pelagic seabird species of the North Atlantic engage in a fly-and-forage strategy during their migratory movements"

Tracking data of marine predators are increasingly used in marine spatial management. We developed a spatial data set with estimates of the monthly distribution of 6 pelagic seabird species breeding in the Northeast Atlantic. The data set was based on year-round global location sensor (GLS) tracking data of 2356 adult seabirds from 2006-2019 from a...

Bird migration is commonly defined as a seasonal movement between breeding and non-breeding grounds. It generally involves relatively straight and directed large-scale movements, with a latitudinal change, and specific daily activity patterns comprising less or no foraging and more traveling time. Our main objective was to describe how this general...

Migratory seabirds are exposed to various pollutants throughout their annual cycle. Among them, mercury (Hg) is of particular concern given large impacts on animals’ health. Recent studies suggest that winter is a critical period for seabirds when contamination by Hg can be higher than other times of year. However, individuals within and between sp...

Biological production in the oceanic zone (i.e. waters beyond the continental shelves) is typically spatially patchy and strongly seasonal. In response, seabirds have adapted to move rapidly within and between ocean basins, making them important pelagic consumers. Studies in the Pacific, Southern and Indian Oceans have shown that seabirds are relat...

Increasing levels of anthropogenic underwater noise have caused concern over their potential impacts on marine life. Offshore renewable energy developments and seismic exploration can produce impulsive noise which is especially hazardous for marine mammals because it can induce auditory damage at shorter distances and behavioral disturbance at long...

Offshore windfarm developments are expanding, requiring assessment and mitigation of impacts on protected species. Typically, assessments of impacts on marine mammals have focused on pile-driving, as intense impulsive noise elicits adverse behavioral responses. However, other construction activities such as jacket and turbine installation also chan...

Understanding spatiotemporally varying animal distributions can inform ecological understanding of species' behavior (e.g., foraging and predator/prey interactions) and support development of management and conservation measures. Data from an array of echolocation-click detectors (C-PODs) were analyzed using Bayesian spatiotemporal modeling to inve...

Seabird-fishery interactions are a known and common phenomenon of conservation concern. Here, we highlight how light-level geolocators provide promising opportunities to study these interactions. By examining raw light data, it is possible to detect encounters with artificial lights at night, while conductivity data give insight on seabird behaviou...

Understanding why animals move as they do when searching for resources is a central question in ecology, and a prerequisite for the development of predictive process-based models for conservation and management. Many species are central-place foragers (CPF). While several models for CPFs have been proposed, they often assume well-defined return rul...

1. Offshore windfarms require construction procedures that minimize impacts on protected marine mammals. Uncertainty over the efficacy of existing guidelines for mitigating near‐field injury when pile‐driving recently resulted in the development of alternative measures, which integrated the routine deployment of acoustic deterrent devices (ADD) int...

This report provides estimates of at-sea distribution for both grey and harbour seals from haulouts in the British Isles. The predictions are based on regional models of habitat preference. Associated shapefiles available from: https://doi.org/10.17630/dcebb865-3177-4498-ac9d-13a0f10b74e1

Efforts to conserve marine mammals are often constrained by uncertainty over their population history. Here, we examine the evolutionary history of a harbour seal (Phoca vitulina) population in the Moray Firth, northeast Scotland using genetic tools and microsatellite markers to explore population change. Previous fine-scale analysis of UK harbour...

Members of the seabird family Procellariidae (albatrosses, petrels and shearwaters) typically produce a single-egg clutch. Two-egg clutches have been recorded occasionally in some of those species, but it is not known whether they were laid by a single female. In this study we examined eight two-egg clutches of the Fulmar Fulmarus glacialis in the...

Distribution maps of cetaceans and seabirds at basin and monthly scales are needed for conservation and marine management. These are usually created from standardized and systematic aerial and vessel surveys, with recorded animal densities interpolated across study areas. However, distribution maps at basin and monthly scales have previously not be...

The efficacy of marine protected areas (MPAs) depends on clear conservation objectives and ecologically meaningful boundaries. The east coast of Scotland bottlenose dolphin population expanded its distributional range during the 1990s beyond the boundaries of the Moray Firth Special Area of Conservation (SAC), originally proposed to contain their c...

• The abundance of harbour seals (Phoca vitulina) in the UK as a whole has increased over the past 10 years, after a 30% decline during the preceding 10 years and two major viral epidemics. However, population trends vary greatly among regions, with those on the east coast of Scotland and in the Northern Isles experiencing dramatic declines since t...

Estimating impacts of offshore windfarm construction on marine mammals requires data on displacement in relation to different noise levels and sources. Using echolocation detectors and noise recorders, we investigated harbour porpoise behavioural responses to piling noise during the 10-month foundation installation of a North Sea windfarm. Current...

Concerns exist about the impacts of underwater noise on marine mammals. These include auditory damage, which is a significant risk for marine mammals exposed to impulsive sounds such as explosions, pile‐driving, and seismic air guns. Currently, impact assessments use different risk criteria for impulsive and non‐impulsive sounds (e.g., ships, drill...

Supplementary plots and tables

Environmental cycles often influence the presence of animals, creating patterns at different temporal scales, which may mean that their effects overlap and/or interact. Interactions between diel and seasonal cycles have been reported to influence fish behaviour but little is known about such interactions in marine top predators. Here, we studied th...

Estimates of temporal variation in demographic rates are critical for identifying drivers of population change and supporting conservation. However, for inconspicuous wide-ranging species, births may be missed and fecundity rates underestimated. We address this issue using photo-identification data and a novel robust design multistate model to inve...

Seabirds are key marine top predator species that are often used as indicators of the environmental quality of the oceans. Their breeding phenology has been studied extensively, but their pelagic habits mean less is known about the phenology of other events during the non‐breeding period. Here, we used miniaturized saltwater immersion light‐based g...

Understanding the drivers underlying fluctuations in the size of animal populations is central to ecology, conservation biology, and wildlife management. Reliable estimates of survival probabilities are key to population viability assessments, and patterns of variation in survival can help inferring the causal factors behind detected changes in pop...

This is a TRACE document ("TRAnsparent and Comprehensive model Evaludation"), which provides supporting evidence that our model presented in: Nabe-Nielsen J., van Beest F.M., Grimm V., Sibly R.M., Teilmann, J. & Thompson, P.M. (2018). Predicting the impacts of anthropogenic disturbances on marine populations. Conserv. Lett. was thoughtfully designe...

Marine ecosystems are increasingly exposed to anthropogenic disturbances that cause animals to change behavior and move away from potential foraging grounds. Here we present a process-based modeling framework for assessing population consequences of such sub-lethal behavioral effects. It builds directly on how disturbances influence animal movement...

Human activities can influence the movement of organisms, either repelling or attracting individuals depending on whether they interfere with natural behavioural patterns or enhance access to food. To discern the processes affecting such interactions, an appropriate analytical approach must reflect the motivations driving behavioural decisions at m...

Telomeres are highly conserved regions of DNA that protect the ends of linear chromosomes. The loss of telomeres can signal an irreversible change to a cell's state, including cellular senescence. Senescent cells no longer divide and can damage nearby healthy cells, thus potentially placing them at the crossroads of cancer and ageing. While the epi...

Growth and body condition can be used as indices of health and fitness, but are difficult to collect for populations of conservation concern where individuals cannot be captured. We incorporated a laser photogrammetry system into boat-based photo-identification surveys that underpin individual-based studies of cetacean populations. These data were...

The ecological value of the stranding record is often challenged due to the complexity in quantifying the biases associated with multiple components of the stranding process. There are biological, physical and social aspects that complicate the interpretation of stranding data particularly at a population level. We show how examination of baseline...

The development of risk assessments for the exposure of protected populations to noise from coastal construction is constrained by uncertainty over the nature and extent of marine mammal responses to man-made noise. Stakeholder concern often focuses on the potential for local displacement caused by impact piling, where piles are hammered into the s...

We used passive acoustic monitoring data to explore the combined effect that environmental cycles have on the presence of bottlenose dolphins in the Moray Firth. Site specific results were obtained and patterns were consistent across years. We found a previously unreported seasonal shift in the diel behaviour in one site.

ABSTRACT: Robust information on animal distributions and foraging behaviour is required to target management and conservation measures for protected species and populations. Visual survey data are commonly used to model these distributions. However, because visual data can only be collected in daylight, modelled distributions and consequent managem...

Accurate estimates of fecundity rate are key to population assessments and effectively direct conservation efforts. We present a new approach to estimate fecundity rate based on the probability of a female giving birth, conditional on a previous birth t years ago, from which an expected inter-birth interval (IBI) can be estimated. We use generalize...

Underwater transient noise has the potential to cause auditory damage in marine mammals, fish, and invertebrates. The risk of auditory damage is closely linked to the temporal structure of transient signals (e.g., rise time, peak pressure), which is modulated through propagation in the environment. Current models used in environmental risk assessme...

Robust estimates of the density or abundance of cetaceans are required to support a wide range of ecological studies and inform management decisions. Considerable effort has been put into the development of line‐transect sampling techniques to obtain estimates of absolute density from aerial‐ and boat‐based visual surveys. Surveys of cetaceans usin...

Effective management and conservation of terrestrially breeding marine predators requires information on connectivity between specific breeding sites and at‐sea foraging areas. In the north‐east Atlantic, efforts to monitor and manage the impacts of bycatch or pollution events within different Convention for the Protection of the Marine Environment...

Differences in phenological responses to climate change among species can desynchronise ecological interactions and thereby threaten ecosystem function. To assess these threats, we must quantify the relative impact of climate change on species at different trophic levels. Here, we apply a Climate Sensitivity Profile approach to 10,003 terrestrial a...

Many wildlife studies use chemical analyses to explore spatio-temporal variation in diet, migratory patterns and contaminant exposure. Intrinsic markers are particularly valuable for studying non-breeding marine predators, when direct methods of investigation are rarely feasible. However, any inferences regarding foraging ecology are dependent upon...

Assessment of underwater noise is increasingly required by regulators of development projects in marine and freshwater habitats, and noise pollution can be a constraining factor in the consenting process. Noise levels arising from the proposed activity are modelled and the potential impact on species of interest within the affected area is then eva...

We review recent work that developed new techniques for underwater noise assessment that integrate acoustic monitoring with automatic identification system (AIS) shipping data and time-lapse video, meteorological, and tidal data. Two sites were studied within the Moray Firth Special Area of Conservation (SAC) for bottlenose dolphins, where increase...

Human activities that impact wildlife do not necessarily remove individuals from populations. They may also change individual behaviour in ways that have sublethal effects. This has driven interest in developing analytical tools that predict the population consequences of short-term behavioural responses. In this study, we incorporate empirical inf...

Monitoring trends in abundance of pinnipeds typically involves counting seals at terrestrial haul-out sites during the breeding season. Counts of seals made at other times of the year are typically lower; however, it is often unknown whether this is because fewer animals are present or whether lower counts simply reflect a reduction in haul-out pro...

Investigation of activity budgets in relation to seasonal, intrinsic (age, sex) and extrinsic (time of day, spatial) covariates enables an understanding of how such covariates shape behavioural strategies. However, conducting such investigations in the wild is challenging, because of the required large sample size of individuals across the annual c...

Assessing broad-scale changes in seabird populations across the North Atlantic requires an integration of available datasets to understand the spatial extent of potential drivers and demographic change. Here, we compared survival of Northern Fulmars Fulmarus glacialis from a Scottish and an Irish colony from 1974 to 2009. Despite lower recapture pr...

Fine-scale information on the occurrence of coastal cetaceans is required to support regulation of offshore energy developments and marine spatial planning. In particular, the EU Habitats Directive requires an understanding of the extent to which animals from Special Areas of Conservation (SAC) use adjacent waters, where survey effort is often spar...