Paul Stoy

University of Wisconsin–Madison | UW · Biological Systems Engineering

The eddy covariance technique has revolutionized our understanding of ecosystem-atmosphere interactions. Eddy covariance studies often use a “paired” tower design in which observations from nearby towers are used to understand how different vegetation, soils, hydrology, or experimental treatment shape ecosystem function and surface-atmosphere excha...

Abstract We investigate the atmospheric diurnal variability inside and above the Amazonian rainforest for a representative day during the dry season. To this end, we combine high‐resolution large‐eddy simulations that are constrained and evaluated against a comprehensive observation set, including CO2 concentrations, gathered during GoAmazon2014/15...

Long‐running eddy covariance flux towers provide insights into how the terrestrial carbon cycle operates over multiple timescales. Here, we evaluated variation in net ecosystem exchange (NEE) of carbon dioxide (CO2) across the Chequamegon Ecosystem‐Atmosphere Study AmeriFlux core site cluster in the upper Great Lakes region of the USA from 1997 to...

Plant water stress occurs at the point when soil moisture (SM) limits transpiration, defining a critical SM threshold ( crit). Knowledge of the spatial distribution of  crit is crucial for future projections of climate and water resources. Here, we use global eddy covariance observations to quantify  crit and evaporative fraction (EF) regimes. T...

Despite the importance of high-latitude surface energy budgets (SEBs) for land-climate interactions in the rapidly changing Arctic, uncertainties in their prediction persist. Here, we harmonize SEB observations across a network of vegetated and glaciated sites at circumpolar scale (1994–2021). Our variance-partitioning analysis identifies vegetatio...

Bioenergy carbon capture and storage (BECCS) systems can serve as decarbonization pathways for climate mitigation. Perennial grasses are a promising second‐generation lignocellulosic bioenergy feedstock for BECCS expansion, but optimizing their sustainability, productivity, and climate mitigation potential requires an evaluation of how nitrogen (N)...

Ecological processes are complex, often exhibiting non-linear, interactive, or hierarchical relationships. Furthermore, models identifying drivers of phenology are constrained by uncertainty regarding predictors, interactions across scales, and legacy impacts of prior climate conditions. Nonetheless, measuring and modeling ecosystem processes such...

Livestock agriculture accounts for ∼15% of global anthropogenic greenhouse gas (GHG) emissions. Recently, natural climate solutions (NCS) have been identified to mitigate farm‐scale GHG emissions. Nevertheless, their impacts are difficult to quantify due to farm spatial heterogeneity and effort required to measure changes in carbon stocks. Remote s...

Vegetation productivity is increasing in the U.S. Northern Great Plains but decreasing in some nearby Northern Rocky Mountain grasslands due to increases in aridity. It is unclear if decreases to montane grassland productivity from drying autumns can be partly offset by late‐season green‐ups after precipitation events. These include the multiple sn...

Perennial crops can improve the ecological and economic sustainability of agroecosystems because of their potential to provide diverse ecosystem services including carbon storage. Intermediate wheatgrass (IWG; Thinopyrum intermedium) is a stress-tolerant grain and forage species that can be grown in bicultures with legumes for symbiotic nitrogen fi...

The processes governing the temporal and spatial patterns of isoprene and monoterpenes emitted by a rainforest in the central Amazon region of Brazil is investigated using a combination of field experiments and numerical simulations. Specifically, Large Eddy Simulations (LES) are used to resolve emissions of isoprene and monoterpenes, turbulent tra...

Wheat is a staple crop that is critical for feeding a hungry and growing planet, but its nutritive value has declined as global temperatures have warmed. The price offered to producers depends not only on yield but also grain protein content (GPC), which are often negatively related at the field scale but can positively covary depending in part on...

Grasslands and shrublands exhibit pronounced spatial and temporal variability in structure and function with differences in phenology that can be difficult to observe. Unpiloted aerial vehicles (UAVs) can measure vegetation spectral patterns relatively cheaply and repeatably at fine spatial resolution. We tested the ability of UAVs to measure pheno...

Gross primary productivity (GPP) is the largest flux in the global carbon cycle and satellite‐based GPP estimates have long been used to study the trends and interannual variability of GPP. With recent updates to geostationary satellites, we can now explore the diurnal variability of GPP at a comparable spatial resolution to polar‐orbiting satellit...

Plain Language Summary Greenhouse gases trap longwave radiation, making it more difficult for energy to leave Earth. This increases air temperatures, but there is much more to global climate change than air temperature alone. Most of the excess energy caused by the increase in greenhouse gases has entered the ocean, because it takes a lot of energy...

Both low soil water content (SWC) and high atmospheric dryness (vapor pressure deficit, VPD) can negatively affect terrestrial gross primary production (GPP). The sensitivity of GPP to soil versus atmospheric dryness is difficult to disentangle, however, because of their covariation. Using global eddy-covariance observations, here we show that a de...

Vegetation productivity is increasing across much of the U.S. Northern Great Plains but is decreasing in some nearby Northern Rocky Mountain grasslands due to increases in aridity. Mountain grasslands support critical ecosystem services that are under threat from ongoing land use and climate changes, and it is important to understand their function...

Understanding the critical soil moisture (SM) threshold (θcrit) of plant water stress and land surface energy partitioning is a basis to evaluate drought impacts and improve models for predicting future ecosystem condition and climate. Quantifying the θcrit across biomes and climates is challenging because observations of surface energy fluxes and...

Biogenic volatile organic compounds (BVOCs) play critical roles in ecological and earth-system processes. Ecosystem BVOC models rarely include soil and litter fluxes and their accuracy is often challenged by BVOC dynamics during periods of rapid ecosystem change like spring leaf out. We measured BVOC concentrations within the air space of a mixed d...

Heat and drought affect plant chemical defenses and thereby plant susceptibility to pests and pathogens. Monoterpenes are of particular importance for conifers as they play critical roles in defense against bark beetles. To date, work seeking to understand the impacts of heat and drought on monoterpenes has primarily focused on young potted seedlin...

In limnological studies of temperate lakes, most studies of carbon dioxide (CO2) and methane (CH4) emissions have focused on summer measurements of gas fluxes despite the importance of shoulder seasons to annual emissions. This is especially pertinent to dimictic, small lakes that maintain anoxic conditions and turnover quickly in the spring and fa...

Surface‐atmosphere fluxes and their drivers vary across space and time. A growing area of interest is in downscaling, localizing, and/or resolving sub‐grid scale energy, water, and carbon fluxes and drivers. Existing downscaling methods require inputs of land surface properties at relatively high spatial (e.g., sub‐kilometer) and temporal (e.g., ho...

Wheat is a staple crop that is critical for feeding a hungry and growing planet, but its nutritive value has declined as global temperatures have warmed. The price offered to producers depends not only on yield but also grain protein content (GPC), which are often negatively related at the field scale but can positively covary depending in part on...

The atmospheric boundary layer mediates the exchange of energy, matter, and momentum between the land surface and the free troposphere, integrating a range of physical, chemical, and biological processes and is defined as the lowest layer of the atmosphere (ranging from a few meters to 3 km). In this review, we investigate how continuous, automated...

Accurate measurements of actual evapotranspiration (ETa) and crop coefficients (Kc) are essential to know crop water requirements and to improve irrigation scheduling. The eddy covariance (EC) technique is increasingly being used to do so. Precise information on Kc for lowland rice is essential for local- and regional-scale irrigation planning but...

Land management strategies can moderate or intensify the impacts of a warming atmosphere. Since the early 1980s, nearly 116,000 km ² of crop land that was once held in fallow during the summer is now planted in the northern North American Great Plains. To simulate the impacts of this substantial land cover change on regional climate processes, conv...

Environmental science is increasingly reliant on remotely sensed observations of the Earth's surface and atmosphere. Observations from polar-orbiting satellites have long supported investigations on land cover change, ecosystem productivity, hydrology, climate, the impacts of disturbance, and more and are critical for extrapolating (upscaling) grou...

Vegetation phenology—the seasonal timing and duration of vegetative phases—is controlled by spatiotemporally variable contributions of climatic and environmental factors plus additional potential influence from human management. We used land surface phenology derived from the Advanced Very High Resolution Radiometer and climate data to examine vari...

Large datasets of greenhouse gas and energy surface-atmosphere fluxes measured with the eddy-covariance technique (e.g., FLUXNET2015, AmeriFlux BASE) are widely used to benchmark models and remote-sensing products. This study addresses one of the major challenges facing model-data integration: To what spatial extent do flux measurements taken at in...

Achieving food security is a critical challenge of the Anthropocene that may conflict with environmental and societal goals such as increased energy access. The “fuel versus food” debate coupled with climate mitigation efforts has given rise to next-generation biofuels. Findings of this systematic review indicate just over half of the studies (56%...

Urgency and deliberateness are often at odds when executing conservation projects, especially as the scale and complexity of objectives increases. The pace of environmental degradation supports immediate and measurable action. However, best practices for adaptive governance and building resilient social-ecological systems call for more deliberate e...

American bison (Bison bison L.) have recovered from the brink of extinction over the past century. Bison reintroduction creates multiple environmental benefits, but impacts on greenhouse gas emissions are poorly understood. Bison are thought to have produced some 2 Tg yr−1 of the estimated 9–15 Tg yr−1 of pre-industrial enteric methane emissions, b...

Understanding carbon (C) dynamics from ecosystem to global scales remains a challenge. Although expansion of global carbon dioxide (CO2) observatories makes it possible to estimate C‐cycle processes from ecosystem to global scales, these estimates do not necessarily agree. At the continental US scale, only 5% of C fixed through photosynthesis remai...

Environmental science is increasingly reliant on remotely-sensed observations of the Earth's surface and atmosphere. Observations from polar-orbiting satellites have long supported investigations on land cover change, ecosystem productivity, hydrology, climate, the impacts of disturbance, and more, and are critical for extrapolating (upscaling) gro...

Keywords: Temperature extremes Pinus palustris metabolic energy density maximum entropy production freezing extreme heat A B S T R A C T The southeastern US has experienced an increase in the number of extreme heat events since the 1970s, due in part to global change. Despite rising temperatures, greater variability in weather has also led to more...

Successful monitoring of soil moisture dynamics at high spatio-temporal resolutions globally is hampered by the heterogeneity of soil hydraulic properties in space and complex interactions between water and the environmental variables that control it. Current soil moisture monitoring schemes via in situ station networks are sparsely distributed whi...

The Chequamegon Heterogeneous Ecosystem Energy-balance Study Enabled by a High-density Extensive Array of Detectors 2019 (CHEESEHEAD19) is an ongoing National Science Foundation project based on an intensive field campaign that occurred from June-October 2019. The purpose of the study is to examine how the atmospheric boundary layer (ABL) responds...

In summer 2018, Europe experienced a record drought, but it remains unknown how the drought affected ecosystem carbon dynamics. Using observations from 34 eddy covariance sites in different biomes across Europe, we studied the sensitivity of gross primary productivity (GPP) to environmental drivers during the summer drought of 2018 versus the refer...

Tropical peat forests are a globally important reservoir of carbon, but little is known about CO2 exchange on an annual basis, especially in undisturbed ecosystems. We measured CO2 exchange between the atmosphere and an undisturbed tropical peat swamp forest in Sarawak, Malaysia using the eddy covariance technique over four years from 2011 to 2014....

Bioenergy with carbon capture and storage (BECCS) has been proposed as a potential climate mitigation strategy raising concerns over trade‐offs with existing ecosystem services. We evaluate the feasibility of BECCS in the Upper Missouri River Basin (UMRB), a landscape with diverse land use, ownership, and bioenergy potential. We develop land‐use ch...

Executive summary • Target audience: AmeriFlux community, AmeriFlux Science Steering Committee & Department of Energy (DOE) program managers [ARM/ASR (atmosphere), TES (surface), and SBR (subsurface)] • Problem statement: The atmospheric boundary layer mediates the exchange of energy and matter between the land surface and the free troposphere in...

Vegetation greenness has increased across much of the global land surface over recent decades. This trend is projected to continue – particularly in northern latitudes – but future greening may be constrained by nutrient availability needed for plant carbon (C) assimilation in response to CO2 enrichment (eCO2). eCO2 impacts foliar chemistry and fun...

Biogenic volatile organic compounds (bVOCs) play important roles in ecological interactions and Earth system processes, yet the biological and physical processes that drive soil bVOC exchanges remain poorly understood. In temperate forests, nearly all tree species associate with arbuscular mycorrhizal (AM) or ectomycorrhizal (ECM) fungi. Given well...

Land‐Use/Cover Change (LUCC) is an important driver of environmental change, occurring at the same time as, and often interacting with, global climate change. Reforestation and deforestation have been critical aspects of LUCC over the past two centuries and are widely studied for their potential to perturb the global carbon cycle. More recently, th...

Terrestrial ecosystems obtain energy in the form of carbon‐containing molecules. Quantifying energy acquisition and dissipation throughout an ecosystem may be useful for describing their resistance and resilience to disturbances. Three longleaf pine savannas with different vegetation composition—a result of variation in soil moisture and land use l...

American bison (Bison bison L.) have recovered from the brink of extinction over the past century. Bison reintroduction creates multiple environmental benefits, but their impacts on greenhouse gas emissions are poorly understood. Bison are thought to have produced some 2 Tg year−1 of the estimated 9–15 Tg year−1 of pre-industrial enteric methane em...

Many plant and fungal species use volatile organic compounds (VOCs) as chemical signals to convey information about the location or quality of their fruits or fruiting bodies to animal dispersers. Identifying the environmental factors and biotic interactions that shape fruit selection by animals is key to understanding the evolutionary processes th...

Feedbacks between atmospheric processes like precipitation and land surface fluxes including evapotranspiration are difficult to observe, but critical for understanding the role of the land surface in the Earth System. To quantify global surface-atmosphere feedbacks we use results of a process network (PN) applied to 251 eddy covariance sites from...

The sagebrush biome covers much of the western United States yet is at risk from ongoing disturbances. Physical disturbances such as fire often overcome the resistance of sagebrush communities to biological disturbances such as invasion by non‐native species, but the impact of burn severity or combined disturbance types on sagebrush community compo...

We examined climate trends in the northern North American Great Plains (NNAGP) from 1970 to 2015, a period that aligns with widespread land-use changes in this globally important agricultural region. Trends were calculated from the Climatic Research Unit (CRU) and other climate datasets using a linear regression model that accounts for temporal aut...