Olivia Du Roure

• PhD Physics
• Reseracher at ESPCI Paris

Branched actin networks exert pushing forces in eukaryotic cells, and adapt their stiffness to their environment. The physical basis for their mechanics and adaptability is however not understood. Indeed, here we show that their high density and low connectivity place them outside the scope of standard elastic network models for actin. We combine h...

Self-assembly of colloidal particles is a promising avenue to control the shape and dynamics of larger aggregates. However, achieving the necessary fine control over the dynamics and specificity of the bonds between such particles remains a challenge. Here we demonstrate such control in bonds mediated by depletion interactions between anisotropic c...

The cellular cortex provides crucial mechanical support and plays critical roles during cell division and migration. The proteins of the ERM family, comprised of ezrin, radixin, and moesin, are central to these processes by linking the plasma membrane to the actin cytoskeleton. To investigate the contributions of the ERM proteins to leukocyte migra...

The actin cortex is an essential element of the cytoskeleton allowing cells to control and modify their shape. It is involved in cell division and migration. However, probing precisely the physical properties of the actin cortex has proved to be challenging: it is a thin and dynamic material, and its location in the cell—directly under the plasma m...

Fiber suspensions flowing in structured media are encountered in many biological and industrial systems. Interactions between fibers and the transporting flow as well as fiber contact with obstacles can lead to complex dynamics. In this work, we combine microfluidic experiments and numerical simulations to study the interactions of a rigid fiber wi...

Fiber suspensions flowing in structured media are encountered in many biological and industrial systems. Interactions between fibers and the transporting flow as well as fiber contact with obstacles can lead to complex dynamics. In this work, we combine microfluidic experiments and numerical simulations to study the interactions of a rigid fiber wi...

The migration of helical particles in viscous shear flows plays a crucial role in chiral particle sorting. Attaching a nonchiral head to a helical particle leads to a rheotactic torque inducing particle reorientation. This phenomenon is responsible for bacterial rheotaxis observed for flagellated bacteria as Escherichia coli in shear flows. Here, w...

The cellular actin cortex provides crucial mechanical support and plays critical roles in numerous functions, including cell division and migration. The proteins of the ERM family, ezrin, radixin, and moesin, are central to these processes by linking the plasma membrane to the actin cytoskeleton. To investigate the individual contributions of these...

Animal cell shape changes are controlled by the actomyosin cortex, a peripheral actin network tethered to the plasma membrane by membrane-to-cortex attachment (MCA) proteins. Previous studies have focused on how myosin motors or actin turnover can generate the local deformations required for morphogenesis. However, how the cell controls local actin...

The fluid–structure interactions between flexible fibres and viscous flows play an essential role in various biological phenomena, medical problems and industrial processes. Of particular interest is the case of particles transported freely in time-dependent flows. This work elucidates the dynamics and morphologies of actin filaments under oscillat...

Chirality-induced effects are at the origin of bacterial rheotaxis and particle drift in shear flows. Here we use 3D printed micro-particles consisting of a spherical head and a helical tail of different pitch and handedness. We investigate the chirality-induced reorientation dynamics using microfluidics and observe asymmetric orientation bistabili...

Helical objects are often implemented in electronic or mechanical micro-systems, requiring a precise understanding of their mechanical properties. While helices formed by cylindrical filaments have been intensely investigated, little is known about the role of the cross-section of the filament at the basis of the helical shape. We study experimenta...

Helical objects are often implemented in electronic or mechanical micro-systems, requiring a precise understanding of their mechanical properties. While helices formed by cylindrical filaments have been intensely investigated, little is known about the role of the cross-section of the filament at the basis of the helical shape. We study experimenta...

We explore the dynamics of a flexible fiber transported by a viscous flow in a Hele-Shaw cell of height comparable to the fiber height. We show that long fibers aligned with the flow experience a buckling instability. Competition between viscous and elastic forces leads to the deformation of the fiber into a wavy shape convolved by a Bell-shaped en...

We report fabrication of highly flexible micron-sized helices from nanometer-thick ribbons. Building upon the helical coiling of such ultrathin ribbons mediated by surface tension, we demonstrate that the enhanced creep properties of highly confined materials can be leveraged to shape helices into the desired geometry with full control of the final...

Correction for 'Non-linear elastic properties of actin patches to partially rescue yeast endocytosis efficiency in the absence of the cross-linker Sac6' by Belbahri Reda et al., Soft Matter, 2022, 18, 1479-1488, https://doi.org/10.1039/D1SM01437D.

The fluid-structure interactions between flexible fibers and viscous flows play an essential role in various biological phenomena, medical problems, and industrial processes. Of particular interest is the case of particles freely transported in time-dependent flows. This work elucidates the dynamics and morphologies of actin filaments under oscilla...

We report fabrication of highly flexible micron-sized helices from nanometer-thick ribbons. Building upon the helical coiling of such ultra-thin ribbons mediated by surface tension, we demonstrate that the enhanced creep properties of highly confined materials can be leveraged to shape helices into the desired geometry with full control of the fina...

Clathrin mediated endocytosis is an essential and complex cellular process involving more than 60 proteins. In yeast, successful endocytosis requires counteracting a large turgor pressure. To this end, yeasts assemble actin patches, which accumulate elastic energy during their assembly. We investigated the material properties of reconstituted actin...

We explore the dynamics of a flexible fiber transported by a viscous flow in a Hele-Shaw cell of height comparable to the fiber height. We show that long fibers aligned with the flow experience a buckling instability. Competition between viscous and elastic forces leads to the deformation of the fiber into a wavy shape convolved by a Bell-shaped en...

Nature is remarkably adept at using interfaces to build structures, encapsulate reagents, and regulate biological processes. Inspired by Nature, we describe flexible polymer-based ribbons, termed "mesoscale polymers" (MSPs), to modulate interfacial interactions with liquid droplets. This produces unprecedented hybrid assemblies in the forms of flag...

The cell cortex is a contractile actin meshwork, which determines cell shape and is essential for cell mechanics, migration, and division. Because its thickness is below optical resolution, there is a tendency to consider the cortex as a thin uniform two-dimensional layer. Using two mutually attracted magnetic beads, one inside the cell and the oth...

Synthetic biomimetic microswimmers are promising agents for in vivo healthcare and important frameworks to advance the understanding of locomotion strategies and collective motion at the microscopic scale. Nevertheless, constructing these devices with design flexibility and in large numbers remains a challenge. Here, a step toward meeting this chal...

As a stiff polymer tumbles in shear flow, it experiences compressive viscous forces that can cause it to buckle and undergo a sequence of morphological transitions with increasing flow strength. We use numerical simulations to uncover the effects of these transitions on the steady shear rheology of a dilute suspension of stiff polymers. Our results...

The transport of bio-particles in viscous flows exhibits a rich variety of dynamical behaviour, such as morphological transitions, complex orientation dynamics or deformations. Characterising such complex behaviour under well controlled flows is key to understanding the microscopic mechanical properties of biological particles as well as the rheolo...

The cell cortex is a contractile actin meshwork, which determines cell shape and is essential for cell mechanics, migration and division. Because the cortical thickness is below optical resolution, it has been generally considered as a thin uniform two-dimensional layer. Using two mutually attracted magnetic beads, one inside the cell and the other...

The transport of bio-particles in viscous flows exhibits a rich variety of dynamical behaviour, such as morphological transitions, complex orientation dynamics or deformations. Characterising such complex behaviour under well controlled flows is key to understanding the microscopic mechanical properties of biological particles as well as the rheolo...

Nature is remarkably adept at using interfaces to build structures, encapsulate reagents, and regulate biological processes. Inspired by nature, flexible polymer‐based ribbons, termed “mesoscale polymers” (MSPs), are described to modulate interfacial interactions with liquid droplets. This produces unprecedented hybrid assemblies in the forms of fl...

The occurrence of coiled or helical morphologies is common in nature, from plant roots to DNA packaging into viral capsids, as well as in applications such as oil drilling processes. In many examples, chiral structures result from the buckling of a straight fibre either with intrinsic twist or to which end moments have been applied in addition to c...

Being able to precisely characterize the mechanical properties of soft microparticles is essential for numerous situations, from the understanding of the flow of biological fluids to the development of soft micro-robots. Here, we present a simple measurement technique for determining Poisson’s ratio of soft micron-sized hydrogels in the presence of...

Being able to precisely characterize the mechanical properties of soft microparticles is essential for numerous situations from the understanding of the flow of biological fluids to the development of soft micro-robots. Here we present a simple measurement technique for the Poisson's ratio of soft micron-sized hydrogels in the presence of a surroun...

Clathrin-mediated endocytosis involves the sequential assembly of more than 60 proteins at the plasma membrane. An important fraction of these proteins regulates the assembly of an actin-related protein 2/3 (Arp2/3)-branched actin network, which is essential to generate the force during membrane invagination. We performed, on wild-type (WT) yeast a...

The occurrence of coiled or helical morphologies is common in nature, from plant roots to DNA packaging into viral capsids, as well as in applications such as oil drilling processes. In many examples, chiral structures result from the buckling of a straight fiber either with intrinsic twist or to which end moments have been applied in addition to c...

The dynamics and deformations of immersed flexible fibers are at the heart of important industrial and biological processes, induce peculiar mechanical and transport properties in the fluids that contain them, and are the basis for novel methods of flow control. Here we focus on the low Reynolds number regime where advances in studying these fiber-...

When transported in confined geometries rigid fibers show interesting transport dynamics induced by friction with the top and bottom walls. Fiber flexibility causes an additional coupling between fiber deformation and transport and is expected to lead to more complex dynamics. A first crucial step for their understanding is the characterization of...

Significance Elastic filaments and semiflexible polymers occur ubiquitously in biophysical systems and are key components of many complex fluids, yet our understanding of their conformational dynamics under flow is incomplete. Here, we report on experimental observations of actin filaments in simple shear and characterize their various dynamical re...

The equilibrium state of a flexible fiber settling in a viscous fluid is examined using a combination of macroscopic experiments, numerical simulations and scaling arguments. We identify three regimes having different signatures on this equilibrium configuration of the elastic filament: weak and large deformation regimes wherein the drag is proport...

The equilibrium state of a flexible fiber settling in a viscous fluid is examined using a combination of macroscopic experiments, numerical simulations and scaling arguments. We identify three regimes having different signatures on this equilibrium configuration of the elastic filament: weak and large deformation regimes wherein the drag is proport...

When transported in confined geometries rigid fibers show interesting transport dynamics induced by friction with the top and bottom walls. Fiber flexibility causes an additional coupling between fiber deformation and transport and is expected to lead to more complex dynamics. A first crucial step for their understanding is the characterization of...

The morphological dynamics, instabilities and transitions of elastic filaments in viscous flows underlie a wealth of biophysical processes from flagellar propulsion to intracellular streaming, and are also key to deciphering the rheological behavior of many complex fluids and soft materials. Here, we combine experiments and computational modeling t...

We measured mechanical properties and dynamic assembly of actin networks with a new method based on magnetic microscopic cylinders. Dense actin networks are grown from the cylinders’ surfaces using the biochemical Arp2/3-machinery at play in the lamellipodium extension and other force-generating processes in the cell. Under a homogenous magnetic fi...

In this communication we outline how the bespoke arrangements and design of micron-sized superparamagnetic shapes provide levers to modulate their assembly under homogeneous magnetic fields. We label this new approach, 'assembly modulated by particle position and shape' (APPS). Specifically, using rectangular lattices of superparamagnetic micron-si...

Fluidization, a process in which a granular solid phase behaves like a fluid under the influence of an imposed upward fluid flow, is routinely used in many chemical and biological engineering applications. It brings, to applications involving fluid-solid exchanges, advantages such as high surface to volume ratio, constant mixing, low flow resistanc...

The dynamics and deformations of immersed flexible fibers are at the heart of important industrial and biological processes, induce peculiar mechanical and transport properties in the fluids that contain them, and are the basis for novel methods of flow control. Here we focus on the low–Reynolds number regime where advances in studying these fiber–...

Fibers are widely used in different industrial processes, for example in paper manufacturing or lost circulation problems in the oil industry. Recently, interest towards the use of fibers at the microscale has grown, driven by research in bio-medical applications or drug delivery systems. Microfluidic systems are not only directly relevant for lab-...

We report the spontaneous formation of rings when a colloidal dispersion, containing silica-coated iron-oxide particles and the liquids ethanol and ethoxylated trimethylolpropane triacrylate, is deposited within micron-sized PDMS wells. Just after filling, the interface between air and the dispersion is a meniscus dictated by the dispersion's conta...

The actin cytoskeleton is an assembly of organized polymer structures. In cells, actin contributes to their internal organization, their rigidity, and their ability to exert forces. The properties of the actin networks are regulated by multiple families of actin binding proteins (ABPs). In this work, we focus on Arp2/3-branched networks, which are...

We examine experimentally the deformation of flexible, microscale helical ribbons with nanoscale thickness subject to viscous flow in a microfluidic channel. Two aspects of flexible microhelices are quantified: the overall shape of the helix and the viscous frictional properties. The frictional coefficients determined by our experiments are consist...

We study, using both experiment and theory, the coupling of transport and shape dynamics for elastomeric fibres moving through an inhomogeneous flow. The cellular flow, created electromagnetically in our experiment, comprises many identical cells of counter-rotating vortices, with a global flow geometry characterized by a backbone of stable and uns...

Gels are a functional template for micro-particle fabrication and microbiology experiments. The control and knowledge of their mechanical properties is critical in a number of applications, but no simple in situ method exists to determine these properties. We propose a novel microfluidic based method that directly measures the mechanical properties...

Fibrosis is a hallmark of human white adipose tissue (WAT) during obesity-induced chronic inflammation. The functional impact of increased interstitial fibrosis (peri-adipocyte fibrosis) on adjacent adipocytes remains unknown. Here we developed a novel in vitro 3D culture system in which human adipocytes and decellularised material of adipose tissu...

The actin cytoskeleton is essential for cell mechanics and motility. Its dynamic nature and the host of actin binding protein (ABP) that modifies its architecture and growth make its description challenging to achieve. Here we propose to study actin branched networks through their mechanical properties. We previously developed a powerful experiment...

We outline a simple technique to engineer monodisperse, superparamagnetic, micron-sized prisms of arbitrary cross-section and large magnetic susceptibility. The fabrication process allows pre-positioning of the particles that introduces another lever to guide self-assembly. In this method, a dispersion of magnetic colloids in a UV-curable monomer i...

We present a mathematical model and corresponding series of microfluidic experiments examining the flow of a viscous fluid past an elastic fibre in a three-dimensional channel. The fibre's axis lies perpendicular to the direction of flow and its base is clamped to one wall of the channel; the sidewalls of the channel are close to the fibre, confini...

Actin filaments play a fundamental role in cell migration and cell mechanics. Assembled by different Actin-Binding Proteins into different structures -cortex, stress fibers, filipodia, lamellipodium- actin filament is the basic unit available for the cell to apply forces or carry tensions. Actin filament is a semi-flexible polymer at the scale of t...

We developed a new method of mechanical measurement, based on the dipolar attraction between magnetic colloids. A spherical gel formed around magnetic colloids is progressively deformed between two surfaces as the dipolar attraction between the colloids increase. Applied force is controlled by the external magnetic field, while the gel deformation...

Actin filaments play a fundamental role in cell mechanics: assembled into networks by a large number of partners, they ensure cell integrity, deformability, and migration. Here we focus on the mechanics of the dense branched network found at the leading edge of a crawling cell. We develop a new technique based on the dipolar attraction between magn...

The cytoskeleton is an interconnected network of filamentous polymers and regulatory proteins. The cell's integrity, deformability and shape changing abilities come from the mechanical properties of these organized assemblies. Both the filaments’ flexibility and their relative organization give the assembly its mechanical properties.Our work aims t...

The interaction of a deformable body with a viscous flow is found in a wide range of situations ranking from biology to polymer science. Here we address the question how an elastic object transported in a viscous flow is deformed by the latter. We experimentally study the deformation and the transport of an isolated elastic fiber in a viscous cellu...

Flexible superparamagnetic filaments (‘fleximags’) are very slender elastic filaments, which can be driven by distributed magnetic torques to mimic closely the behaviour of biological flagella. Previously, fleximags have been used as a basis for artificial micro-swimmers capable of transporting small cargos Dreyfus et al. (Nature, vol. 437, 2005, p...

We combine technical, experimental, and theoretical efforts to investigate the collective dynamics of artificial microcilia in a viscous fluid. We take advantage of soft lithography and colloidal self-assembly to devise microcarpets made of hundreds of slender magnetic rods. This novel experimental setup is used to investigate the dynamics of exten...

Magnetic colloids move apart as a consequence of actin polymerization. Video of the magnetic chain during actin polymerization. (9.52 MB AVI)

Author Summary Actin self-assembles into filaments, and this produces forces that deform cell membranes in a large number of motile processes. While physical measurements have been performed of the force produced by growth of either a single filament or a large intricate array of filaments organized in an active macroscopic gel, these measurements...

We investigate experimentally and theoretically the dynamics of paramagnetic microrods tethered to a solid wall and driven by a precessing magnetic field. We identify two distinct regimes : at low driving frequencies, the response of the rod is synchronous whatever the inclination of the field. Above a characteristic frequency, two qualitatively di...

We report on the collective beating of artificial magnetic cilia. First, we show how to combine soft-lithography and colloidal-self assembly to achieve patterning of PDMS surfaces with soft magnetic micro-cilia. Second, we investigate the collective hydrodynamics of regular cilia arrays actuated by a precessing magnetic field. Whereas an isolated c...

We investigate experimentally and theoretically the dynamics of paramagnetic microrods anchored to a surface and driven by a precessing magnetic field. We identify two distinct regimes, corresponding to extended domains in the (ω,θ(B)) plane, where ω and θ(B) are, respectively, the frequency and inclination of the driving field. At low frequencies,...

Whereas the adhesion and migration of individual cells have been well described in terms of physical forces, the mechanics of multicellular assemblies is still poorly understood. Here, we study the behavior of epithelial cells cultured on microfabricated substrates designed to measure cell-to-substrate interactions. These substrates are covered by...

We report experiments on the deformation and transport of an elastic fiber in a viscous cellular flow, namely a lattice of counter-rotative vortices. We show that the fiber can buckle when approaching a stagnation point. By tuning either the flow or fiber properties, we measure the onset of this buckling instability. The buckling threshold is deter...

We investigate the propulsive force resulting from the rotation of a flexible filament in the low Reynolds number regime. Using a simple linear model, we establish the nonlinear torque–force relations for two torque-driven actuation modes. When the rotation of the filament is induced by two perpendicular transverse oscillating torques, the propulsi...

Actin polymerization drives protrusions at the cell surface and leads to cell motility. Using magnetic colloids, we measure how the chemical reaction of polymerization generates mechanical forces. Rapid force- distance measurement gives us access to the filaments organisation between colloids, whereas long experiments at constant forces give the fo...

A possible propulsion mechanism at low Reynolds number is the rotation of a flexible filament, tilted with respect to its rotation axis. Using a simple linear model, we establish the non linear torque-force relations for two torque-driven actuation modes. When the rotation of the filament is induced by two perpendicular transverse oscillating torqu...

Arrays of motile cilia are used for the propulsion of microprganisms and also for the production of a leftward flow on mammal embryos. We have constructed a physical model of these ciliary arrays, based on linear colloidal structures made of micron-sized superparamagnetic particles (fleximags). These fleximags are attached at one end on the wall of...

Flexible fibers can undergo a buckling instability when they are in interaction with a viscous flow. It has been predicted numerically that the deformation of an elastic fiber can affect both the macroscopic rheology and the transport of the individual fiber through a cellular flow [1]. However, direct experimental observations of the coupling betw...

We analyze experimentally the shape of a long elastic filament rotating in a viscous liquid. We identify a continuous but sharp transition from a straight to an helical shape, resulting from the competition between viscous stresses and elastic forces. This induced helicity generates a propulsive force along the axis of rotation. In addition, we sho...

A majority of microorganisms propel themselves with long flexible cilia or flagella. Understanding in detail the hydrodynamics of such propulsion mechanisms is important both from biological and engineering point of views, in particular to design artificial microswimmers. We report an experimental investigation of the propulsive force delivered by...

Fleximags are linear colloidal structures made of micron-sized superparamagnetic particles. Permanent links between colloids are established through molecules grafted on the particles. The elasticity of the linker bestows a flexibility to the filament. The fleximags have already been used to make one of the first artificial microswimmers (Dreyfus e...

We report measurements of the adhesion forces between single E-cadherin fragments anchored on solid surfaces. These fragments consist of the two outermost extracellular domains of the protein. The specificity of the measured rupture forces was demonstrated by Ca2+ exchange experiments. Two series of experiments were performed using two linkers of d...

Magnetic colloidal particles can be readily assembled into one-dimensional structures by field induced dipole-dipole interactions. When interacting polymers are adsorbed on the colloid surfaces, the filaments can be made into permanent flexible filaments, or "fleximags". Their bending properties is then determined by the mechanical properties of th...

Mechanical forces play an important role in various cellular functions, such as tumor metastasis, embryonic development or tissue formation. Cell migration involves dynamics of adhesive processes and cytoskeleton remodelling, leading to traction forces between the cells and their surrounding extracellular medium. To study these mechanical forces, a...

We measure dynamic traction forces exerted by epithelial cells on a substrate. The force sensor is a high-density array of elastomeric microfabricated pillars that support the cells. Traction forces induced by cell migration are deduced from the measurement of the bending of these pillars and are correlated with actin localization by fluorescence m...

We present an approach to fabricate an array of elastomer posts in order to dynamically measure the traction forces exerted by living cells on a surface with a micrometer lateral resolution. Arrays of closely spaced vertical microposts are made in silicone elastomer [poly(dimethylsiloxane) (PDMS)] by molding a Silicon substrate that has been machin...

We study the grafting of newly synthesized nickel-chelating molecules on gold surfaces via their thiol moiety. These functionalized surfaces can be used as templates to anchor recombinant proteins engineered to bear a sequence of six histidines (His-tag). To tune the nickel concentration on the surface and ultimately the protein density, we have gr...