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Publications (9)
A main problem with reproducing machine learning publications is the variance of metric implementations across papers. A lack of standardization leads to different behavior in mechanisms such as checkpointing, learning rate schedulers or early stopping, that will influence the reported results. For example, a complex metric such as Fréchet inceptio...
Patients with severe COVID-19 have overwhelmed healthcare systems worldwide. We hypothesized that machine learning (ML) models could be used to predict risks at different stages of management and thereby provide insights into drivers and prognostic markers of disease progression and death. From a cohort of approx. 2.6 million citizens in Denmark, S...
How we choose to represent our data has a fundamental impact on our ability to subsequently extract information from them. Machine learning promises to automatically determine efficient representations from large unstructured datasets, such as those arising in biology. However, empirical evidence suggests that seemingly minor changes to these machi...
Background Patients with severe COVID-19 have overwhelmed healthcare systems worldwide. We hypothesized that Machine Learning (ML) models could be used to predict risks at different stages of management (at diagnosis, hospital admission and ICU admission) and thereby provide insights into drivers and prognostic markers of disease progression and de...
Pulmonary opacification is the inflammation in the lungs caused by many respiratory ailments, including the novel corona virus disease 2019 (COVID-19). Chest X-rays (CXRs) with such opacifications render regions of lungs imperceptible , making it difficult to perform automated image analysis on them. In this work, we focus on segmenting lungs from...
Time-series analysis is confounded by nonlinear time warping of the data. Traditional methods for joint alignment do not generalize: after aligning a given signal ensemble, they lack a mechanism, that does not require solving a new optimization problem, to align previously-unseen signals. In the multi-class case, they must also first classify the t...
Disentangled representation learning finds compact, independent and easy-to-interpret factors of the data. Learning such has been shown to require an inductive bias, which we explicitly encode in a generative model of images. Specifically, we propose a model with two latent spaces: one that represents spatial transformations of the input data, and...
We propose and investigate new complementary methodologies for estimating predictive variance networks in regression neural networks. We derive a locally aware mini-batching scheme that result in sparse robust gradients, and show how to make unbiased weight updates to a variance network. Further, we formulate a heuristic for robustly fitting both t...