Ming Yue

• Doctor of Philosophy
• Principal Investigator at Northwest University

Climate change presents significant challenges to plant growth and reproduction. Clonal plants, with low genetic diversity, are particularly vulnerable due to their limited adaptive capacity. Plant-associated microbiomes can play a crucial role in enhancing clonal plant survival and adaptability, yet the mechanisms governing microbial community ass...

Trait and evolutionary differences among coexisting species are increasingly used to comprehend the processes shaping communities. However, they do not consistently yield congruent insights due to methodological limitations and scale dependence. Utilizing two plastid DNA genes (rbcL and matK) and one nuclear DNA gene (internal transcribed spacer, I...

This study aimed to reveal the effects of crude oil addition on the characteristics of soil microbial communities and ecosystem multifunctionality in Achnatherum splendens and Pennisetum alopecuroides. Specifically, it explored how crude oil addition influences the relationship between soil nutrient regulation, microbial community characteristics,...

Members of the genus Juglans (walnuts, family Juglandaceae) are typical Tertiary relict tree species. They are widely distributed in China and are well known for their edible nuts and high‐quality wood. The genetic structure and historical gene flow patterns of Chinese Juglans still need to be resolved. Here, we collected samples from a total of 22...

Leaf area to sapwood area ratio (AL/AS) influences carbon sequestration, community composition, and ecosystem functioning in terrestrial vegetation and is closely related to leaf economics and hydraulics. However, critical predictors of AL/AS are not well understood. We compiled an AL/AS data set with 1612 species‐site combinations (1137 species fr...

The walnut (Juglans regia) is a woody oilseed crop with high economic and food value as its kernels are edible and its hulls can be widely used in oil extraction and plugging, chemical raw materials, and water purification. Currently, red walnut varieties have emerged, attracting consumer interest due to their high nutritional values as they are ri...

Bacteria, fungi, archaea, and viruses are reflective organisms that indicate soil health. Investigating the impact of crude oil pollution on the community structure and interactions among bacteria, fungi, archaea, and viruses in Calamagrostis epigejos soil can provide theoretical support for remediating crude oil pollution in Calamagrostis epigejos...

Microbial adsorption is a cost-effective and environmentally friendly remediation method for heavy metal pollution. The adsorption mechanism of cadmium (Cd) by bacteria inhabiting extreme environments is largely unexplored. This study describes the biosorption of Cd²⁺ by Sphingomonas sp. M1-B02, which was isolated from the moraine on the north slop...

Soil microbial communities are essential drivers of ecosystem functions, yet the factors shaping their structure and function, particularly at different altitudes and between invasive and native plants, remain insufficiently understood. Using high-throughput Illumina sequencing, we assessed the composition, diversity, impact factors, and functional...

Aims Forest gaps disturb soil available nutrients and microbial biomass unparallelly along precipitation gradients, leading to stoichiometric mismatches that limit the growth of microbial communities. However, adaptions of microbial physiological and metabolic processes to the stoichiometric limitations and the resulting effects on soil carbon (C)...

Soil microbial communities are essential drivers of ecosystem functions, yet the factors shaping their structure and function, particularly at different altitudes and between invasive and native plants, remain insufficiently understood. Our study investigated the influence of plant species and altitude on soil bacterial communities in the Qinling M...

Invasive plants have already been observed in the understory of mountain forests, which are often considered a safe shelter for most native plants. Microorganisms might be drivers of plant invasions. Nevertheless, the mechanisms determining variations in microbial community composition (beta diversity) during invasion along altitudinal gradients re...

Plant restoration strategies are ubiquitously employed for the purposes of soil and water conservation and ecological improvement in forest ecosystems. Despite N and temperature being acknowledged as pivotal factors affecting plant restoration outcomes, their effects on soil fertility, microbial communities, and shrub biomass remain underexplored,...

Climbing plants are important components of tropical and many temperate forest ecosystems. Current studies regard climbing plants as a single ecological plant type and ignore the ecological differences resulting from their climbing mechanisms, which may lead to a misrepresentation of the role of climbing plants in forest dynamics. Based on behavior...

Invasive plants exert significant ecological impacts on native plants, communities, and ecosystems. However, consistent conclusions regarding how traits of invasive plants, native plants, and their divergences affect invasion dynamics are still lacking. Here, we conducted a pairwise common garden experiment to investigate how invasion was influence...

Accurately predicting carbon‐climate feedbacks relies on understanding the environmental factors regulating soil organic carbon (SOC) storage and dynamics. Here, we employed a microbial ecological model (MEND), driven by downscaled output data from six Earth system models under two Shared Socio‐economic Pathways (SSP1‐2.6 and SSP5‐8.5) scenarios, t...

Introduction Touch by neighboring plants is a common but overlooked environmental variable for plants, especially in dense vegetation. In addition, shade is inevitable for understory plants. The growth performance of clonal plant to the interaction between thigmomorphogenesis and shade response, and their impact on light adaptability is still unkno...

Platycarya strobilacea belongs to the walnut family (Juglandaceae), is commonly known as species endemic to East Asia, and is an ecologically important, wind pollinated, woody deciduous tree. To facilitate this ancient tree for the ecological value and conservation of this ancient tree, we report a new high-quality genome assembly of P. strobilacea...

Hedysarum qilianshanense sp. nov. (Fabaceae, Hedysareae) is described and illustrated from the Qilianshan Mountains in Gansu, China. This new species is similar to H. przewalskii , but can be distinguished by its corolla being light purple to purple, standard 15–19 mm long, wings 14–16 mm long, keels 16–19 mm long, and the ovary and legume being gl...

Studies suggest that clonal plants’ ability to select habitats and forage in a heterogeneous environment is influenced by their past environment, with stress legacy potentially playing a crucial role. In this study, we examined parental ramets of Duchesnea indica Focke that were subject to either a control or lead-contaminated environment (past env...

The MYB transcription factor gene family is among the most extensive superfamilies of transcription factors in plants and is involved in various essential functions, such as plant growth, defense, and pigment formation. Salvia nemorosa is a perennial herb belonging to the Lamiaceae family, and S. nemorosa has various colors and high ornamental valu...

Covering about 30% of the global total land area, desert ecosystems have been influenced by warming and nitrogen deposition. However, it remains unclear how desert ecosystems respond to warming and nitrogen deposition. Therefore, we conducted a greenhouse experiment to examine the impacts of N addition and warming on the plant–soil system of Neotri...

Environmental filtering and dispersal limitation jointly determine patterns of beta diversity, for which little is known about how their relative contribution to beta diversity varies with sample size and the dimensions of diversity in desert plant communities. Here, based on vegetation survey data from the southern margin of the Taklamakan Desert,...

The knowledge of transcription factor (TF) families is an important aspect in the postgenomic era. The U-box TF play pivotal role in plant development and growth. Although, the U-box gene family has been extensively investigated in many plants, it has not been systematically explored in Juglans regia. This study aims to identify U-box TF in J. regi...

Purpose Soil carbon cycling processes in terrestrial ecosystems are significantly influenced by global changes, and soil microorganisms play a crucial role in soil organic carbon (SOC) and its feedbacks to climate change. Methods To investigate the potential future changes in soil carbon dynamics under different scenarios in the Ziwuling Forest re...

Speciation is often accompanied by frequent gene exchanges, which have been gradually recognized as a common phenomenon in nature. Although gene flow may influence different reproductive isolations, the specific mechanism of the process still requires more experimental evidence, especially in hybrid populations that have no significant differentiat...

Juglans regia is an important perennial crop cultivated for its high-quality nuts and wood. It is generally believed that J. regia survived and expanded in almost completely isolated stands in Asia after the last glaciation. Humans subsequently dispersed J. regia through cultural expansion and trade. We evaluated the spatial genetic structure and g...

Assessing plant diversity during community succession based on plant trait and phylogenetic features within a community (alpha scale) and among communities (beta scale) could improve our understanding of community succession mechanism. However, whether changes of community functional diversity at alpha and beta scale are structured by different tra...

We examined the morphological and physiological responses of Osmanthus fragrans 'Yingui' (Yin) and O. fragrans 'Jingui' (Jin) to different NaCl concentrations. NaCl concentrations significantly affected plant height and leaf mass per area. Total biomass decreased by 22.8-41.8% under moderate and high NaCl which inhibited O. fragrans growth. The rat...

Soil microorganisms are critical biological indicators for evaluating soil health and play a vital role in carbon (C)-climate feedback. In recent years, the accuracy of models in terms of predicting soil C pools has been improved by considering the involvement of microbes in the decomposition process in ecosystem models, but the parameter values of...

Walnut (Juglans) species are used as nut crops worldwide. Eastern black walnut (EBW, J. nigra), a diploid, horticultural important woody species is native to much of eastern North America. Although it is highly valued for its wood and nut, there are few resources for understanding EBW genetics. Here, we present a high-quality genome assembly of J....

Hybridization is recognized as a major force in species evolution and biodiversity formation, generally leading to the origin and differentiation of new species. Multiple hybridization events cannot easily be reconstructed, yet they offer the potential to study a number of evolutionary processes. Here, we used nuclear expressed sequence tag-simple...

Restoration of natural secondary forests and afforestation of introduced tree species are major effective measures for revegetation. The semiarid Loess Plateau region, characterised by fragile ecosystems and severe soil erosion, is a key area for ecological restoration and protection in China. To illustrate water use characteristics and adaptation...

Fire and mowing are crucial drivers of grass growth. However, their effects on soil properties, microbial communities, and plant productivity in dry-alkaline grasslands have not been well investigated. This study evaluated the effects of mowing (slightly and deeply) and fire on vegetation traits (Tiller number per cluster and plant height) and biom...

Increasingly, tropical studies based on aboveground traits have suggested that lianas have a more acquisitive strategy than trees, thereby possibly explaining the increase in lianas relative to trees in many tropical forests under global change. However, few studies have tested whether this pattern can be extended to root traits and temperate fores...

The Quercus wutaishanica forest influences the ecological environment and climate characteristics and plays an important ecological role in the Loess Plateau region. However, we still know relatively little about the genetic diversity and spatial distribution of Q. wutaishanica. Here, we assessed the genetic diversity of Q. wutaishanica using simpl...

Kin recognition might help plants decrease competitive cost and improve inclusive fitness with close genes; thus it might interact with environmental factors to affect communities. Whether and how various factors, such as the genetic distance of neighbors, environmental stressors, or the way a plant recognizes its neighbors, might modify plant grow...

Although there is an increasing debate about ecological consequences of environmental predictability for plant phenotype and fitness, the effect of predictability of parental environments on the offspring is still indefinite. To clarify the role of environmental predictability in maternal effects and the growth strategy of clonal offspring, a green...

Understanding patterns of species richness along an altitudinal gradient is one of the central focuses of ecological research and can offer us insights into the mechanisms of species diversity. However, few studies have focused on a large scale. Based on the distribution data of 3538 species collected from the local flora of the entire Qinling Moun...

Vegetation community complexity is a critical factor influencing terrestrial ecosystem stability. China, the country leading the world in vegetation greening resulting from human activities, has experienced dramatic changes in vegetation community composition during the past 30 years. However, how China's vegetation community complexity varies spat...

A new species, Allium tsinlingense, from southern Shaanxi Province, China, is described and illustrated here. This species is similar to A. maowenense in Allium sect. Daghestanica, but it can be distinguished by its leaves solid, its spathe persistent after flowering, its flowers changing color from green, greenish to white in different stage, but...

Water availability is a key environmental factor affecting plant species distribution, and the relationships between hydraulic and economic traits are important for understanding the species’ distribution patterns. However, in the same community type but within different soil water availabilities, the relationships in congeneric species remain ambi...

Revealing soil microbial community assembly and associated influencing factors is essential for understanding the diversity and functioning of terrestrial ecosystems. Yet how soil microbial communities respond to environmental factors and plant traits in natural shrub ecosystems has received little attention. Therefore, we explored the diversity an...

Habitat selection behaviour is an effective strategy adopted by clonal plants in heterogeneous understorey light environments, and it is likely regulated by the parental environment's ultraviolet-B radiation levels (UV-B) due to the photomorphogenesis of UV-B and maternal effects. Here, parental ramets of Duchesnea indica were treated with two UV-B...

The trait-based approaches have made progress in understanding the community assembly process. Here, we explore the key traits that may shape community assembly patterns of the same community type but within different water availabilities. Natural Quercus wutaishanica forests were chosen as a suitable study system to test the difference between eco...

Diversity and its maintaining mechanism (community assembly) shift along resource availability gradients at local and regional levels. It is necessary to identify key natural factors shaping community assembly or diversity patterns, so that understanding the patterns of diversity and assembly along these factors across local to regional scales. In...

Upon a sudden transition from low to high light, electrons transported from photosystem II (PSII) to PSI should be rapidly consumed by downstream sinks to avoid the over-reduction of PSI. However, the over-reduction of PSI under fluctuating light might be accelerated if primary metabolism is restricted by low stomatal conductance. To test this hypo...

Questions Interspecific differences in plant biomass allocation reflect plant nutrient use strategy, determining species fitness under different environmental conditions. However, plant biomass allocation may be affected by both habitat and plant traits. We asked how environmental conditions and plant traits jointly affect shrub biomass allocation....

Leaf phenological traits vary greatly with plant species, are thought to relate to leaf functional traits, and play an important role in plant growth. In this study, we investigated leaf phenological and functional traits of 52 woody species (324 individuals) from a natural forest in the Loess Plateau in China. Shrubs obtain a longer leaf life span...

Key message By comparing the phylogeography of Juglans regia and J. mandshurica, we found that two walnut species, even when sympatric, rarely introgress, suggesting that strong hybridization barriers exist between these species. Abstract The biogeographic investigation of temperate walnut (Juglans) trees is of great interest because of their ecol...

To investigate the diversity and distribution of rhizobia associated with Sophora davidii in habitats with different light and soil conditions at the Loess Plateau, we isolated rhizobia from root nodules of this plant grown at 14 sites at forest edge or understory in Shaanxi Province. Based on PCR-RFLP and phylogenies of 16S rRNA gene, housekeeping...

The forest tree family Aceraceae is widespread in the northern hemisphere and it has ecological and economic importance. However, the phylogenetic relationships and classifications within the family are still controversial due to transitional intraspecific morphological characteristics and introgression hybridization among species. In this study, w...

The responses of plants to recurrent stress may differ from their responses to a single stress event. In this study, we investigated whether clonal plants can remember past environments. Parental ramets of Glechoma longituba (Nakai) Kuprian were exposed to UV-B stress treatments either once or repeatedly (20 and 40 repetitions). Differences in DNA...

Manchurian walnut (Juglans mandshurica Maxim.) is a synonym of J. cathayensis, a diploid, vulnerable, temperate deciduous tree valued for its wood and nut. It is also valued as a rootstock for Juglans regia because of its reported tolerance of lesion nematode. Reference genomes are available for several Juglans species, our goal was to produce a de...

Background – Shrublands are receiving increasing attention because of climate change. However, knowledge about biomass allocation of shrublands at the community level and how this is regulated by climate is of limited availability but critical for accurately estimating carbon stocks and predicting global carbon cycles. Methods – We sampled 50 typic...

Clonal plants in heterogeneous environments can benefit from their habitat selection behavior, which enables them to utilize patchily distributed resources efficiently. It has been shown that such behavior can be strongly influenced by their memories on past environmental interactions. Epigenetic variation such as DNA methylation was proposed to be...

Propagule traits vary among biomes along geographical gradients such as longitude, but the mechanisms that underlie these variations remain unclear. This study aims to explore seed mass variation patterns of different biome types along a longitudinal gradient and their underlying variation mechanisms by involving an in-depth analysis on the variati...

Background Plant leaves are important organs for photosynthesis and biological energy production. The leaves of Tricyrtis macropoda have an unusual spotted pattern. However, whether the spots of T. macropoda affect the plant microbiome and metabolites is unclear. In this study, we compared differences in the endosphere microbiome and plant metaboli...

One of the key aims of global change studies is to predict more accurately how plant community composition responds to future environmental changes. Although interspecific relationship is one of the most important forces structuring plant communities, it remains a challenge to integrate long‐term consequences at the plant community level. As an inc...

Chloroplasts are semiautonomous organelles found in photosynthetic plants. The major functions of chloroplasts include photosynthesis and carbon fixation, which are mainly regulated by its circular genomes. In the highly conserved chloroplast genome, the chloroplast transfer RNA genes (cp tRNA) play important roles in protein translation within chl...

Trait-based approaches present a promising avenue for improving our understanding of species coexistence and community assembly, while intraspecific trait variation (ITV) across different spatial scales is important in trait-based community assembly mechanisms, especially in extreme environments. In this study, we focused on the functional diversit...

Gymnosperms such as ginkgo, conifers, cycads, and gnetophytes are vital components of land ecosystems, and they have significant economic and ecologic value, as well as important roles as forest vegetation. In this study, we investigated the structural variation and evolution of chloroplast transfer RNAs (tRNAs) in gymnosperms. Chloroplasts are imp...

Key message NAC transcription factors may play important roles in the biological processes in Persian walnut. A total of 102 JrNAC s were identified in Persian walnut. The conserved domains, transcriptome profile, expression analysis, and interaction network suggest that JrNAC1-4 plays potential roles in Persian walnut flowering development. Contex...

Ultraviolet-B radiation can result in deleterious effects on many plant growth processes. In clonal plants, resources and hormones are often shared between connected ramets to deal with various environments. However, little is known about whether and how clonal integration influences the ability of clonal plants to respond to UV-B radiation. In thi...

Propagule traits vary among communities along geographical gradients such as longitude, but the mechanisms that underlie these variations remain unclear. This study aims to explore seed mass variation patterns of different community types along a longitudinal gradient and their underlying variation mechanisms by involving an in-depth analysis on th...

Community ecologists often assume that species-level trait differences drive habitat differentiation that promotes species coexistence. Direct empirical studies testing trait–habitat relationships in forest ecosystems are critical for understanding the functional basis of tree coexistence and predicting the effects of forest disturbance on diversit...

Stomata control the water loss for transpiration and the CO2 uptake for photosynthesis. However, the relationships between photosynthesis and stomatal traits across a wide range of species are largely been unknown. Here, we tested the relationships among maximum photosynthetic rate (Amax), stomatal density (SD), stomatal length (SL) and maximum sto...