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Publications (327)
Anthropogenic disturbances alter trajectories of ecological succession, introduce spatiotemporal variability in the composition of communities, and potentially create communities that differ substantially from those prior to disturbance. Invasive species are introduced or spread by human activities, with considerable effect on native ecosystems thr...
Elevational gradients represent platforms for exploring the effects of environmental variation on biodiversity. The environmental correlates of these spatial gradients are likely to be modified during the Anthropocene, as species respond to global change drivers including warming and increased frequency of extreme events. We quantified variation in...
Public health concerns about recent viral epidemics have motivated researchers to seek novel ways to understand pathogen infection in native, wildlife hosts. With its deep history of tools and perspectives for understanding the abundance and distribution of organisms, ecology can shed new light on viral infection dynamics. However, datasets allowin...
Interspecific competition, environmental filtering, or spatial variation in productivity can contribute to positive or negative spatial covariance in the abundances of species across ensembles (i.e., groups of interacting species defined by geography, resource use, and taxonomy). In contrast, density compensation should give rise to a negative rela...
Quantification of phenological patterns (e.g. migration, hibernation or reproduction) should involve statistical assessments of non‐uniform temporal patterns. Circular statistics (e.g. Rayleigh test or Hermans‐Rasson test) provide useful approaches for doing so based on the number of individuals that exhibit particular activities during a number of...
Public health concerns about recent viral epidemics have motivated researchers to seek novel ways to understand pathogen infection in native, wildlife hosts. With its deep history of tools and perspectives for understanding the abundance and distribution of organisms, ecology can shed new light on viral infection dynamics. However, datasets allowin...
Background
It is crucial to support students in better understanding water and sustainability issues because water plays a vital role in maintaining global ecosystems, including human life. A wide range of curricular and instructional supports like those embodied in model-based learning (MBL) are necessary for teachers to engage students in the cor...
A metacommunity perspective provides ecological insight into spatiotemporal dynamics because it explicitly considers the structure and organization of communities along environmental gradients, and seeks to understand the local (e.g., biotic interactions, environmental tolerances, habitat preferences) and regional (e.g., dispersal, habitat fragment...
Natural selection should favor individuals that synchronize energy-demanding aspects of reproductive activity with periods of high resource abundance and predictability, leading to seasonal patterns of reproduction at the population level. Nonetheless, few studies—especially those on bats in the Neotropics—have used rigorous quantitative criteria t...
The Anthropocene is characterized by complex, primarily human‐generated, disturbance regimes that include combinations of long‐term press (e.g. climate change, pollution) and episodic pulse (e.g. cyclonic storms, floods, wildfires, land use change) disturbances. Within any regime, disturbances occur at multiple spatial and temporal scales, creating...
Understanding the role of alien species in forest communities, and how native and alien species interact to shape the composition and structure of contemporary forests, is of critical importance to invasion ecology and natural resource management. We used vegetation data collected over a 20-year period in 341 permanent plots representing remnants o...
The Anthropocene is a time of unprecedented and accelerating rates of environmental change that includes press (e.g., climate change) and pulse disturbances (e.g., cyclonic storms, land use change) that interact to affect spatiotemporal dynamics in the density, distribution, and biodiversity of organisms. We leverage three decades of spatially expl...
In addition to changes associated with climate and land use, parrots are threatened by hunting and capture for the pet trade, making them one of the most at risk orders of birds for which conservation action is especially important. Species richness is often used to identify high priority areas for conserving biodiversity. By definition, richness c...
Models that capture spatial and temporal dynamics are applicable in many scientific fields. Non‐separable spatio‐temporal models were introduced in the literature to capture these dynamics. However, these models are generally complicated in construction and interpretation. We introduce a class of non‐separable transformed multivariate Gaussian Mark...
The equilibrium theory of island biogeography and its quantitative consideration of origination and extinction dynamics as they relate to island area and distance from source populations have evolved over time and enriched theory related to many disciplines in spatial ecology. Indeed, the island focus was catalytic to the emergence of landscape eco...
Climate‐induced disturbances such as hurricanes affect the structure and functioning of ecosystems, especially those in the Caribbean Basin, where high‐energy storms have long affected ecosystem dynamics. Because climate change will likely continue to alter the frequency and intensity of hurricanes in the Caribbean, it is increasingly important to...
Aim
Climate-induced pulse (e.g., hurricanes) and press (e.g., global warming) disturbances represent threats to populations, communities, and the ecosystem services that they provide. We leveraged three decades of annual data on tropical gastropods to quantify the effects of major hurricanes, associated secondary succession, and global warming on a...
Microbiota perform vital functions for their mammalian hosts, making them potential drivers of host evolution. Understanding effects of environmental factors and host characteristics on the composition and biodiversity of the microbiota may provide novel insights into the origin and maintenance of these symbiotic relationships. Our goals were to (1...
The cover image is based on the Original Article Unraveling the Effects of Multiple Types of Disturbance on an Aquatic Plant Metacommunity in Freshwater Lakes, by Jason D. Lech and Michael R. Willig https://doi.org/10.1111/fwb.13725.
The Anthropocene is a time of rapid change induced by human activities, including pulse and press disturbances that affect the species composition of local communities and connectivity among them, giving rise to spatiotemporal dynamics at multiple scales. We evaluate effects of global warming and repeated intense hurricanes on gastropod metacommuni...
• Lakes and ponds experience numerous forms of disturbance, including land use (anthropogenic), invasive species (biotic), and eutrophication (abiotic). Although these disturbances act independently or synergistically to affect native species composition, their effects generally are not considered simultaneously, thereby failing to account for appr...
Insectivorous vertebrates, especially on islands, can exert top‐down control on herbivorous prey, which can transfer through a food chain to reduce herbivory. However, in many systems insectivorous vertebrates feed on more than one trophic level, especially consuming arthropod predators, and this intraguild predation can diminish trophic cascades....
Significance
Despite claims to the contrary, arthropod abundances are not generally declining in the Luquillo Experimental Forest in response to warming. Interannual variation in abundance reflects patterns of species turnover as well as consequences of hurricane-induced disturbance and secondary succession. Critically, long-term monitoring using c...
The Luquillo Experimental Forest (LEF) has a long history of research on tropical forestry, ecology, and conservation , dating as far back as the early 19th Century. Scientific surveys conducted by early explorers of Puerto Rico, followed by United States institutions contributed early understanding of biogeography, species endemism, and tropical s...
An in-depth curricular unit exploring the effects of human land use on local water resources was created as part of a Teacher Professional Learning Program at the University of Connecticut’s Natural Resources Conservation Academy. This unit was designed to connect high school students to water resources in their community, both in the field and thr...
Subject to hurricane disturbance for millennia, natural ecosystems of Puerto Rico exhibit clearpatterns of resistance (e.g., many tree species have little immediate storm-related mortality) and resilience (e.g., leaf litterfall and stream chemistry returned to pre-hurricane levels in as little as five years). Contemporaneous studies of near-shore a...
Understanding how multi-scale host heterogeneity affects viral community assembly can illuminate ecological drivers of infection and host-switching. Yet, such studies are hindered by imperfect viral detection. To address this issue, we used a community occupancy model - refashioned for the hierarchical nature of molecular-detection methods - to acc...
Models that capture the spatial and temporal dynamics are applicable in many science fields. Non-separable spatio-temporal models were introduced in the literature to capture these features. However, these models are generally complicated in construction and interpretation. We introduce a class of non-separable Transformed Gaussian Markov Random Fi...
Understanding the determinants of species coexistence in complex and species-rich communities is a fundamental goal of ecology. Patterns of species coexistence depend on how biotic interactions and environmental filtering act over ecological and evolutionary time scales. Climatic fluctuations in lowland rainforests of the Congo Basin led to the num...
Microbiomes perform vital functions for their mammalian hosts, making them potential drivers of host evolution. Understanding effects of environmental factors and host characteristics on the composition and biodiversity of microbiomes may provide novel insights into the origin and maintenance of these symbiotic relationships. Our goals were to (1)...
Surrogates and indicators of biodiversity are used to infer the state and dynamics of species populations and ecosystems, as well as to inform conservation and management actions. Despite their widespread use, few studies have examined how ecological theory can guide the selection or surrogates and indicators, and thus reduce the likelihood of fail...
Public health concerns about recent viral epidemics have motivated researchers to seek transdisciplinary understanding of infection in wildlife hosts. With its deep history devoted to explaining the abundance and distribution of organisms, ecology can augment current methods for studying viral dynamics. However, datasets allowing ecological explora...
Aim
The incorporation of functional and phylogenetic information is necessary to comprehensively characterize spatial patterns of biodiversity and to evaluate the relative importance of ecological and evolutionary mechanisms in molding such patterns. We evaluated the relative importance of mechanisms that shape passerine biodiversity along an exten...
Because biodiversity is increasingly threatened by habitat destruction and climate change, conservation agencies face challenges associated with an uncertain future. In addition to changes associated with climate and land use, parrots are threatened by hunting and capture for the pet trade, making them the most at-risk order of birds in the world....
Checkerboards have emerged as a metaphor to (1) describe mutually exclusive patterns of co-occurrence for ecologically similar species that are geographically interspersed (i.e., checkerboard distributions), and (2) characterize relationships among species distributions along gradients that involve entire metacommunities (i.e., checkerboard metacom...
Recognition of the Anthropocene epoch formally acknowledges the pervasive and increasingly dominant effects of human activities on the world’s biomes. A defining characteristic of the Anthropocene is habitat conversion (land-use change) for agricultural and urbanized land uses. Within this context, landscape ecology is of critical importance as it...
Aim
Conservation planning and prioritization generally have focused on protecting taxa based on assessments of their long‐term persistence or on protecting habitats and sites with high species richness. An implicit assumption of these approaches is that species are equally different from each other. We propose metrics for conservation planning and...
We present a complete dataset from the literature on functional traits including morphological measurements, dietary information, foraging strategy, and foraging location for all 398 extant species of parrots. The morphological measurements include: mass, total length, wing chord, culmen length, tarsus length, and tail length. The diet data describ...
Landscape modification represents one of the most severe threats to biodiversity from local to global scales. Conversion of forest to agricultural production generally results in patches of habitat that subdivide or isolate populations, alter the behavior of species, modify interspecific interactions, reduce biodiversity, and compromise ecosystem p...
Biodiversity at larger spatial scales (γ) can be driven by within‐site partitions (α), with little variation in composition among locations, or can be driven by among‐site partitions (β) that signal the importance of spatial heterogeneity. For tropical elevational gradients, we determined the (a) extent to which variation in γ is driven by α‐ or β‐...
Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time se...
Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time se...
Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time se...
Protecting aboveground carbon stocks in tropical forests is essential for mitigating global climate change and is
assumed to simultaneously conserve biodiversity. Although the relationship between tree diversity and carbon
stocks is generally positive, the relationship remains unclear for consumers or decomposers. We assessed this
relationship for...
Conservation is often operationalized as a minimization of human intervention in nature. However, many social-ecological systems depend on human interventions to maintain characteristics of biological diversity. Therefore, reduced use or full abandonment of such systems can diminish rather than enhance biological diversity and its related cultural...
Protecting aboveground carbon stocks in tropical forests is essential for mitigating global climate change and is assumed to simultaneously conserve biodiversity. Although the relationship between tree diversity and carbon stocks is generally positive, the relationship remains unclear for consumers or decomposers. We assessed this relationship for...
Increasing biodiversity from the poles toward the equator is one of the most well-established patterns in ecology and biogeography. This latitudinal gradient pertains to all major taxa and to all dimensions of biodiversity (i.e., taxonomic, functional, and phylogenetic). Latitudinal gradients in functional and phylogenetic biodiversity are strong,...
As patch-generating and patch-modifying phenomena, disturbances have profound effects on the temporal and spatial dynamics of biodiversity, including aspects such as species composition, species richness, and species diversity. Less well documented are the effects of disturbance on phylogenetic or functional dimensions of biodiversity. The temporal...
Forest edges influence more than half of the world's forests and contribute to worldwide declines in biodiversity and ecosystem functions. However, predicting these declines is challenging in heterogeneous fragmented landscapes. Here we assembled a global dataset on species responses to fragmentation and developed a statistical approach for quantif...
Habitat conversion creates a mosaic of land cover types, which affect the spatial distribution, diversity, and abundance of resources. We used abundance, functional, and phylogenetic information to determine if Neotropical bat communities exhibited phylogenetic or functional overdispersion or underdispersion in response to habitat conversion. Overd...
We present a framework for biodiversity metrics that organizes the growing panoply of metrics. Our framework distinguishes metrics based on the type of information–abundance, phylogeny, function–and two common properties–magnitude and variability. Our new metrics of phylogenetic diversity are based on a partition of the total branch lengths of a cl...
The PREDICTS project—Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)—has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used t...
Figure S1: Database schema. Diversity data in yellow, GIS data in green and Catalogue of Life data in blue. The diversity tables datasource, study, site, measuredtaxon and diversitymeasurement
follow the structure described in ‘Methods’ in the main text and in Hudson et al. (2014): a datasource is associated with one or more study records, each of...
The PREDICTS project—Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)—has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used t...
The PREDICTS project—Projecting Responses of Ecological Diversity In Changing Terrestrial Systems (www.predicts.org.uk)—has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used t...
We quantified long-term successional trajectories of canopy arthropods on six tree species in a tropical rainforest ecosystem in the Luquillo Mountains of Puerto Rico that experienced repeated hurricane-induced disturbances during the 19-yr study (1991-2009). We expected: 1) differential performances of arthropod species to result in taxon- or guil...
Quantifying how human-modified landscapes shape the distribution of biodiversity is critical for developing effective conservation strategies. To address this, we evaluated three hypotheses (habitat area, habitat configuration and matrix heterogeneity hypotheses) that predict responses of biodiversity to landscape structure in human-modified landsc...
One aspect of biodiversity, functional diversity, reflects the functional role of species within a community as measured by species characteristics. We present a new metric, functional trait dispersion, based on the concept of species distinctiveness measured as the distance among species in the multidimensional space defined by trait values. This...
Background
Assembly of species into communities following human disturbance (e.g., deforestation, fragmentation) may be governed by spatial (e.g., dispersal) or environmental (e.g., niche partitioning) mechanisms. Variation partitioning has been used to broadly disentangle spatial and environmental mechanisms, and approaches utilizing functional an...
Results from three weighted least-square regressions using environmental and spatial predictors for species composition, functional dispersion or phylogenetic dispersion
Protocol of data collection, geographic location and general description of sampling sites, dates of data collection, site-by-species abundance matrices for the dry season and wet season of 2010, and species trait data
Results from variation partitioning for functional or phylogenetic composition
Summary of landscape characteristics in the Caribbean lowlands of Costa Rica