Matthias Noll

University of Applied Sciences Coburg · Institute of Bioanalysis

Deadwood provides habitat for fungi and serves diverse ecological functions in forests. We already have profound knowledge of fungal assembly processes, physiological and enzymatic activities, and resulting physico-chemical changes during deadwood decay. However, in situ detection and identification methods, fungal origins, and a mechanistic unders...

Phosphorus (P) is a non-replaceable, finite component of fertilizers. The imbalanced resource distribution and possible depletion of P impose challenges on current crop production worldwide. The aim of this study was to assess the impact of poultry litter biochar on plant growth and P mobilizing capability of the microbiome in comparison to a miner...

Deadwood is a nitrogen (N) poor environment and its decomposition rate is limited by low N bioavailability. Diazotrophs reduce such N limitations as they are capable of fixing N 2 which employs the functional gene nifH. The present study investigates the diazotrophic community composition in deadwood logs of 13 different tree species in temperate f...

Many moss species are associated with nitrogen (N)‐fixing bacteria (diazotrophs) that support the N supply of mosses. Our knowledge relates primarily to pristine ecosystems with low atmospheric N input, but knowledge of biological N fixation (BNF) and diazotrophic communities in mosses in temperate forests with high N deposition is limited. We meas...

Background Tree mycorrhizal types (arbuscular mycorrhizal fungi and ectomycorrhizal fungi) alter nutrient use traits and leaf physicochemical properties and, thus, affect leaf litter decomposition. However, little is known about how different tree mycorrhizal species affect the microbial diversity, community composition, function, and community ass...

Bees come into contact with bacteria and fungi from flowering plants during their foraging trips. The Western honeybee (Apis mellifera) shows a pronounced hygienic behavior with social interactions, while the solitary red mason bee (Osmia bicornis) lacks a social immune system. Since both visit the same floral resources, it is intriguing to specula...

Honey bees are crucial for our ecosystems as pollinators, but the intensive use of plant protection products (PPPs) in agriculture poses a risk for them. PPPs do not only affect target organisms but also affect non-targets, such as the honey bee Apis mellifera and their microbiome. This study is the first of its kind, aiming to characterize the eff...

Enhanced nitrogen (N) deposition due to combustion of fossil fuels and agricultural fertilization is a global phenomenon which has severely altered carbon (C) and N cycling in temperate forest ecosystems in the northern hemisphere. Although deadwood holds a substantial amount of C in forest ecosystems and thus plays a crucial role in nutrient cycli...

While interest in underground gas storage (UGS) of hydrogen (H 2) in salt caverns is increasing in a growing H 2 economy, knowledge of the microbial communities inhabiting those hypersaline environments is still scarce. High salt concentrations and limited availability of carbon (C) sources in cavern environments reduce microbial growth rates and m...

Poly(butylene succinate-co-adipate) (PBSA) degradation and its plastisphere microbiome in cropland soils have been studied; however, such knowledge is limited in the case of forest ecosystems. In this context, we investigated: i) the impact of forest types (conifer and broadleaved forests) on the plastisphere microbiome and its community assembly,...

The prevalence of potential human pathogenic members of the order Rickettsiales differs between Borrelia burgdorferi sensu lato-positive and -negative tick microbiomes. Here, co-infection of members of the order Rickettsiales, such as Rickettsia spp., Anaplasma phagocytophilum, Wolbachia pipientis, and Neoehrlichia mikurensis as well as B. burgdorf...

Deadwood provides an important carbon source in forests and wooded ecosystems and, accordingly, forest management strategies discuss the enrichment of deadwood amount and diversity by different tree species. To investigate the decomposition processes of enriched deadwood, we simultaneously placed 3,669 size-standardized and gamma sterilized wood sp...

Despite the abundance of observations of foliar pathogens, our knowledge is severely lacking regarding how the potential fungal pathobiome is structured and which processes determine community assembly. In this study, we addressed these questions by analysing the potential fungal pathobiome associated with the senescing leaves and needles of 12 tem...

Deadwood is an extremely nitrogen (N) poor plant litter whose decomposition may rely on external N sources. Biological N2 fixation (BNF) by free-living diazotrophs, encoded with the nifH gene, is a potential pathway of N acquisition in deadwood. Still, the control of this process by tree species specific traits is hardly known. Here, we examined (1...

Bio-based and biodegradable plastic mulching films have been proposed to replace the non-biodegradable plastic mulch films to solve plastic pollution problems in agricultural soils. However, the impact of bio-based and biodegradable plastics on plant and human health remains largely unexplored. Here, we aimed to assess the risk under field conditio...

Currently, lichen surveys are generally based on the examination of fruiting bodies. Lichens in the mycelial stage, in spores, or awaiting conditions for fruiting body formation are usually overlooked, even though they are important for maintaining biodiversity and ecosystem functions. This study aimed to explore the lichenized fungal community com...

The interactions of microalgae and their associated microbiomes have come to the fore of applied phycological research in recent years. However, the functional mechanisms of microalgal interactions remain largely unknown. Here, we examine functional protein patterns of the microalgae Scenedesmus vacuolatus and its associated bacterial community dur...

The incomplete degradation of bio-based and biodegradable plastics (BBPs) in soils causes multiple threats to soil quality, human health, and food security. Plastic residuals can interact with soil microbial communities. We aimed to link the structure and enzyme-mediated functional traits of a microbial community composition that were present durin...

Even though it is widely acknowledged that litter decomposition can be impacted by climate change, the functional roles of microbes involved in the decomposition and their answer to climate change are less understood. This study used a field experimental facility settled in Central Germany to analyze the effects of ambient vs. future climate that i...

Microbial community members are the primary microbial colonizers and active decomposers of deadwood. This study placed sterilized standardized beech and spruce sapwood specimens on the forest ground of 8 beech-and 8 spruce-dominated forest sites. After 370 days, specimens were assessed for mass loss, nitrogen (N) content and 15 N isotopic signature...

Deadwood is an extremely nitrogen (N) poor plant litter whose decomposition may rely on external N sources. Biological N 2 fixation (BNF) by free-living diazotrophs, encoded with the nifH gene, is a potential pathway of N acquisition in deadwood. Still, the control of this process by tree species specific traits is hardly known. Here, we examined (...

Deadwood is an important component of the global carbon cycle, and its decomposition releases carbon dioxide (CO2) and methane (CH4) into the atmosphere. However, the main drivers of these greenhouse gas emissions from deadwood are not well understood. We investigated drivers that govern the CO2 and CH4 emission rates of 793 deadwood specimens from...

Bio-based and biodegradable plastics such as mulching films are widely used in agricultural field sites. However, there are limited studies of their impact on plant development and health even though an important soil-borne plant pathogen F . solani has been reported to associate with various types of bio-based and biodegradable plastics, especiall...

Cyanobacteria are a promising source for the sustainable production of biodegradable bioplastics such as poly(3-hydroxybutyrate) (PHB). The auto-phototrophic biomass formation is based on light and CO2, which is an advantage compared to heterotrophic PHB-producing systems. So far, only a handful of cyanobacterial species suitable for the high-yield...

Recently, a new annotation tool "FungalTraits" was created based on the previous FUNGuild and Fun Fun databases, which has attracted high attention in the scientific community. These databases were widely used to gain more information from fungal sequencing datasets by assigning fungal functional traits. More than 1500 publications so far employed...

We discovered a biological mechanism supporting microbial degradation of bio-based poly (butylene succinate-co-adipate) (PBSA) plastic in soils under ambient and future climates. Here, we show that nitrogen-fixing bacteria facilitate the...

Fluorescence spectroscopy offers a cheap, simple, and fast approach to monitor poly(3-hydroxybutyrate) (PHB) formation, a biodegradable polymer belonging to the biodegradable polyester class polyhydroxyalkanoates. In the present study, a fluorescence and side scatter-based spectroscopic setup was developed to monitor in situ biomass, and PHB format...

Background: Bio-based and biodegradable plastics are considered as plastics of the future owing to their ability to decompose under various environmental conditions. However, their effects on the soil microbiome are poorly characterised. In this study, we aimed to investigate the effects of an important bio-based and biodegradable plastic, polybuty...

Biocides are used in building materials to protect the building against microbial colonization and biodeterioration. However, these biocides are introduced by gradual leaching into soils in proximity of the buildings. This review discusses the aspects and characteristics of biocides from building materials in terms of (i) in-situ leaching and simul...

Citation: Nißl, L.; Westhaeuser, F.; Noll, M. Antimycotic Effects of 11 Essential Oil Components and Their Combinations on 13 Food Spoilage Yeasts and Molds. J. Fungi 2021, 7, 872. Abstract: Food safety is important to reduce food spoilage microorganisms and foodborne pathogens. However, food safety is challenging, as customers' demand for natural...

In recent years microalgae products have developed increasing market demand, but sustainable industrial production is still challenged by biological stability of large-scale production plants. Yet the relationships between algal hosts, associated microbiomes, and contaminants in photobioreactors remains widely understudied. The aim of this study wa...

The distribution of human Lyme borreliosis (LB) is assumed random in Germany, indicating that the human pathogenic species of the Borrelia burgdorferi sensu lato complex (Bb) are similarly distributed as part of the tick microbiome. The aim of this study was to differentiate if the presence of Bb occurs with a defined tick microbiome composition. F...

Little is known about microbial communities of aquatic plants despite their crucial ecosystem function in aquatic ecosystems. Here, we analyzed the microbiota of an aquatic rheophyte, Hanseniella heterophylla, growing at three areas differing in their degree of anthropogenic disturbance in Thailand employing a metabarcoding approach. Our results sh...

Even though it is widely acknowledged that litter decomposition can be impacted by climate change, the functional roles of microbes involved in the decomposition and their answer to climate change are less understood. This study used a field experimental facility settled in Central Germany to analyze the effects of ambient vs. future climate that i...

Biocides are frequently applied as disinfectants in animal husbandry to prevent the transmission of drug-resistant bacteria and to control zoonotic diseases. Concerns have been raised, that their use may contribute to the selection and persistence of antimicrobial-resistant bacteria. Especially, extended-spectrum β-lactamase- and AmpC β-lactamase-p...

Polyhydroxyalkanoates (PHA) are synthesized as intracellular carbon and energy storage compounds by many bacteria and are accumulated as granules in the cytoplasm of cells. Quantification of enriched PHA is of great importance for industrial production processes. Fluorescence measurements are particularly suitable for rapid determination of PHA dur...

Zusammenfassung Hintergrund Die Bedeutung des epidermalen Mikrobioms bei der Pathogenese der atopischen Dermatitis (AD) rückt verstärkt in den Fokus aktueller Forschung. Ziel der Arbeit Die Wirkung eines probiotischen Badezusatzes auf die klinische Symptomatik und das epidermale Mikrobiom von Patienten mit AD wurde untersucht. Material und Metho...

The fight against food waste benefits from novel agents inhibiting spoilage. The present study investigated the preservative potential of the antimicrobial peptides Leg1 (RIKTVTSFDLPALRFLKL) and Leg2 (RIKTVTSFDLPALRWLKL) recently identified in chickpea legumin hydrolysates. Checkerboard assays revealed strong additive antimicrobial effects of Leg1/...

Atopic dermatitis (AD) is a widespread chronic inflammatory dermatologic disorder. This randomized, double-blind study aims to evaluate the effect of synbiotic baths with a defined mixture of six viable lactic acid bacteria (LAB) and prebiotics, without bacteria and prebiotics and placebo baths without prebiotics and bacteria to treat AD patients o...

Polyhydroxyalkanoates (PHA) are synthesized as intracellular carbon and energy storage compounds by many bacteria and are accumulated as granules in the cytoplasm of cells. Quantification of enriched PHA is of great importance for industrial production processes. Fluorescence measurements are particularly suitable for rapid determination of PHA dur...

The relationship between biodiversity and ecosystem functioning (BEF) is a central issue in soil and microbial ecology. To date, most belowground BEF studies focus on the diversity of microbes analyzed by barcoding on total DNA, which targets both active and inactive microbes. This approach creates a bias as it mixes the part of the microbiome curr...

The relationship between biodiversity and ecosystem functioning (BEF) is a central issue in soil and microbial ecology. To date, most belowground BEF studies focus on the diversity of microbes analyzed by barcoding on total DNA, which targets both active and inactive microbes. This approach creates a bias as it mixes the part of the microbiome curr...

Environmental fluctuations are a common occurrence in an ecosystem, which have an impact on organismic diversity and associated ecosystem services. The aim of this study was to investigate how a natural and a species richness-reduced wood decaying community diversity were capable of decomposing Fagus sylvatica dead wood under a constant and a fluct...

Various microbial pathogens have been found in ticks such as Ixodes ricinus. However, most studies assessed tick microbiomes without prior decontamination of the tick surface, which may alter the results and mislead conclusions regarding the composition of the tick-borne microbiome. The aim of this study was to test four different decontamination m...

When weight loss attempts fail, people sometimes turn to surgery. Roux-en-Y gastric bypass is a last-resort treatment that alters gut architecture to cause substantial and sustained weight loss. The surgery alters the intestinal microbiota in the patient, which affects nutrient absorption. Unfortunately, it can be difficult to separate the effects...

We investigated the suitability of a newly developed biocide susceptibility test system based on microtiter plates containing vacuum dried biocides as a fast and reliable screening method. The evaluated substances included the cationic biocides benzalkonium chloride (BAC), chlorhexidine dihydrochloride (CHX), cetylpyridinium chloride, didecyldimeth...

The destruction of microalgae cultures in industrial production plants caused by biological contaminations represents a serious obstacle for the commercial use of algal biomass. Especially fungal infections with intracellular zoosporic parasites like Aphelida (Ophistosporidia) can lead to massive algae biomass loss. While contamination management i...

Background: Roux-en-Y gastric bypass (RYGB) surgery is a last-resort treatment to induce substantial and sustained weight loss in cases of severe obesity. This anatomical rearrangement affects the intestinal microbiota, but so far, little information is available on how it interferes with microbial functionality and microbial-host interactions ind...

Wood-decomposition in terrestrial ecosystems is a very important process with huge ecologic consequences. This decomposition process is a combination of biological respiration, leaching and fragmentation, mainly triggered by organismic activities. In order to gain a deeper insight into these microbial communities and their role in deadwood decay, w...

The objective of our study was to investigate the effects of benzalkonium chloride (BC) adaptation of L. monocytogenes on the susceptibility to antimicrobial agents and on the viable but non culturable (VBNC) state of the bacterial cells. We adapted L. monocytogenes SLCC2540 to BC by applying BC below minimum inhibitory concentration (MIC) to above...

Mangrove forest trees play important ecological functions at the interface between terrestrial and marine ecosystems. However, despite playing crucial roles in plant health and productivity, there is little information on microbiomes of the tree species in mangrove ecosystems. Thus, in this study we aimed to characterize the microbiome in soil (rhi...

Foodborne pathogens such as L. monocytogenes can persist in food production environments for a long time, causing perennial outbreaks. Hence, bacterial pathogens are able to survive cleaning and disinfection procedures. Accordingly, they may be repeatedly exposed to sublethal concentrations of disinfectants, which might result in bacterial adaptati...

Die Zerstörung von Mikroalgenkulturen in großtechnischen Anlagen durch biologische Kontaminanten stellt ein allgegenwärtiges Problem mit hohen finanziellen Auswirkungen für die industrielle Nutzung von Algenbiomasse dar. Dennoch wird dieser Aspekt der Mikroalgenkultivierung in der Forschung kaum beachtet. Im Rahmen des Vortrages werden Ergebnisse...

naerobic degradation (AD) of heterogeneous agricultural substrates is a complex process involving a diverse microbial community. While microbial community composition of a variety of biogas plants (Bps) is well described, little is known about metabolic processes and microbial interaction patterns. Here, we analyzed 16 large-scale BPs using metapro...

Travel and migration are the major drivers of human brucellosis in Western Europe. The infection is usually transmitted through the consumption of unpasteurized milk or dairy products in or from endemic regions. Although eradicated from livestock in Germany and most Member States of the European Union, considerable numbers of domestic human brucell...

The lantibiotic nisin is used as a food additive to effectively inactivate a broad spectrum of Gram-positive bacteria such as Listeria monocytogenes. In total, 282 L. monocytogenes field isolates from German ready-to-eat food products, food-processing environments and patient samples and 39 Listeria reference strains were evaluated for their suscep...

Copper-based preservatives are used for wood protection, which leads to an enrichment of copper tolerant microbial communities in respective soil environments. In this study impregnated pine wood specimens (2 × 2 × 36 cm) were half buried in two field sites with (North Germany, NG) and without (Central Germany, CG) a long preservative history and i...

Nisin is frequently added as food additive to soft cheese to increase food safety against foodborne pathogens like Listeria monocytogenes. The goal of this study was the extension of the antimicrobial activity of nisin in sour curd cheese (SCC) by self-releasing adsorbed nisin from Neusilin UFL2 over production-based pH shift. First, the antimicrob...

Copper-based fungicides are routinely used for wood and plant protection, which can lead to an enrichment of copper-tolerant microbial communities in soil. To investigate the effect of such wood preservatives on the soil fungal and bacterial community compositions, five different vineyard and fruit-growing soil environments were evaluated using inc...

This article contains data of bacterial and archaeal community compositions and process parameters of 16 biogas (BPs) and ten sewage treatment plants (STPs). Nucleic acids of BPs were extracted using a CTAB-based method while a phenol-chloroform-based method was applied for STPs. Amplicon sequencing data of the 16S rRNA gene was achieved by MiSeq-t...