Matthew L. Aardema

Montclair State University · Department of Biology and Molecular Biology

Making the Change The Apocynaceae plant family produces toxic cardenolids. However, many insects have managed to escape the deleterious effects of these chemicals and even, in some cases, use them in their own defense. Zhen et al. (p. 1634 ) investigated a broad range of taxa and found several examples of parallel changes, as well as duplications,...

Many distantly-related insect species are specialized feeders of cardenolide-containing host plants such as milkweed (Asclepias spp.). Studies have revealed frequent, parallel substitution of a functionally important amino acid substitution (N122H) in the alpha subunit of Na(+) ,K(+) -ATPase (N122H) in many of these species. This substitution facil...

Cardenolides are a class of plant secondary compounds that inhibit the proper functioning of the Na(+) , K(+) -ATPase enzyme in susceptible animals. Nonetheless, many insect species are able to sequester cardenolides for their own defence. These include butterflies in the subfamily Danainae (Family: Nymphalidae) such as the monarch (Danaus plexippu...

Background: The host range of a pathogenic bacterial strain likely influences its effective population size, which in turn affects the efficacy of selection. Transmission between competent hosts may occur more frequently for host generalists than for specialists. This could allow higher bacterial population densities to persist within an ecological...

Anaplasma phagocytophilum is a Gram-negative obligate intracellular bacterium that replicates in neutrophils. It is transmitted via tick-bite and causes febrile disease in humans and animals. Human granulocytic anaplasmosis is regarded as an emerging infectious disease in North America, Europe and Asia. However, although increasingly detected, it i...

Toxic cardiotonic steroids (CTS) act as a defense mechanism in many firefly species (Lampyridae) by inhibiting a crucial enzyme called Na+,K+-ATPase (NKA). While most fireflies produce these toxins internally, species of the genus Photuris acquire them from a surprising source: predation on other fireflies. The contrasting physiology of toxin expos...

Background Anaplasma phagocytophilum is a Gram-negative obligate intracellular bacterium that replicates in neutrophil granulocytes. It is transmitted by ticks of the Ixodes ricinus complex and causes febrile illness called granulocytic anaplasmosis primarily in humans, horses, dogs, sheep, cattle and goats. In comparison, clinically apparent disea...

Background Anaplasma phagocytophilum is a tick-vectored, obligately intracellular bacterium that infects a diversity of vertebrate hosts. In North America, the Ap-ha variant of A. phagocytophilum can cause dangerous infections in humans, whereas symptomatic human infections in Europe are rare. Conversely, the European host-generalist ecotype of A....

The scarlet macaw, Ara macao , is a neotropical parrot that contains two described subspecies with broadly discrete geographical distributions. One subspecies, A. m. macao , is found from South America north into southwestern Costa Rica, while the second subspecies, A. m. cyanoptera , is found from eastern Costa Rica north into central Mexico. Our...

How evolution at the cellular level potentiates change at the macroevolutionary level is a major question in evolutionary biology. With >66,000 described species, rove beetles (Staphylinidae) comprise the largest metazoan family. Their exceptional radiation has been coupled to pervasive biosynthetic innovation whereby numerous lineages bear defensi...

Many species of fireflies (Lampyridae) are defended from predation by toxic cardiotonic steroids (CTS), which inhibit the physiologically critical enzyme Na ⁺ ,K ⁺ -ATPase (NKA). While most firefly genera defended by these toxins produce them autogenously, species of the genus Photuris obtain them from a surprising source: predation on other firefl...

Understanding patterns of diversification, genetic exchange, and pesticide resistance in arthropod disease vectors is necessary for effective population management. With the availability of next-generation sequencing technologies, one of the best approaches for surveying such patterns involves the simultaneous genotyping of many samples for a large...

In Europe, genetically distinct ecotypes of the tick-vectored bacterium Anaplasma phagocytophilum circulate among mammals in three discrete enzootic cycles. To date, potential ecological factors that contributed to the emergence of these divergent ecotypes have been poorly studied. Here, we show that the ecotype that predominantly infects roe deer...

Zanna tenebrosa (Hemiptera: Fulgoridae), a traditionally eaten phloem feeding planthopper known as sakondry, has received recent attention for its farming potential; these insects have been successfully cultivated on bean plants in remote, rural communities that depend on natural resources for their food security, without increasing the loss of loc...

Bacteria species that must obligately replicate in vertebrate host cells make up a large proportion of the prokaryotic pathogens with human and veterinary health implications. In such bacterial taxa, extrinsic processes play an important role in influencing the phylogenetic diversity of viable hosts (‘host range’). These processes include both chan...

Our understanding of how natural selection and demographic processes produce and maintain biological diversity remains limited. However, developments in high-throughput genomic sequencing coupled with new analytical tools and phylogenetic methods now allow detailed analyses of evolutionary patterns in genes and genomes responding to specific demogr...

Admixture and introgression play a critical role in adaptation and genetic rescue that has only recently gained a deeper appreciation. Here, we explored the geographic and genomic landscape of cryptic ancestry of the endangered red wolf that persists within the genome of a ubiquitous sister taxon, the coyote, all the while the red wolf has been ext...

Understanding patterns of diversification, genetic exchange, and pesticide resistance in insect species of human health concern is necessary for effective population reduction and management. With the broad availability of next-generation sequencing technologies, one of the best approaches for surveying such patterns involves the simultaneous genot...

Forests, and the vertebrate species within them, are irreplaceable sources of food and nutrition for millions of people living in areas of high biodiversity. Unfortunately, many of these forests are being cleared for agriculture, and many animals are threatened with extinction from unsustainable hunting. Forest clearing and the hunting of threatene...

Understanding how evolutionary forces interact to drive patterns of selection and distribute genetic variation across a species' range is of great interest in ecology and evolution, especially in an era of global change. While theory predicts how and when populations at range margins are likely to undergo local adaptation, empirical evidence testin...

Genes known to affect circadian rhythms (i.e. ‘clock genes’) also influence the photoperiodic induction of overwintering reproductive diapause in the northern house mosquito, Culex pipiens f. pipiens. This suggests that molecular changes in one or more clock genes could contribute to the inability to diapause in a second form of this mosquito, Cule...

[This corrects the article DOI: 10.1371/journal.pone.0247607.].

Ancient DNA is transforming our ability to reconstruct historical patterns and mechanisms shaping modern diversity and distributions. In particular, molecular data from extinct Holocene island faunas have revealed surprising biogeographic scenarios. Here, we recovered partial mitochondrial (mt) genomes for 1300–1400 year old specimens (n = 2) of th...

Admixture and introgression play a critical role in adaptation and genetic rescue that has only recently gained a deeper appreciation. Here, we explored the geographic and genomic landscape of cryptic ancestry of the endangered red wolf that persists within the genome of a ubiquitous sister taxon, the coyote, all the while the red wolf has been ext...

The use of Cannabis is gaining greater social acceptance for its beneficial medicinal and recreational uses. With this acceptance has come new opportunities for crop management, selective breeding, and the potential for targeted genetic manipulation. However, as an agricultural product Cannabis lags far behind other domesticated plants in knowledge...

In temperate climates, the mosquito Culex molestus lives almost exclusively in urban underground locations such as flooded basements, sewer systems and subway tunnels. Unlike most other mosquito taxa found at higher latitudes, Cx. molestus remains active and continues to breed throughout the winter. This is attributable to year-round above freezing...

Previous investigations of genetic diversity across the distribution of the Nile crocodile (Crocodylus niloticus) confirmed the existence of two genetically distinct species of true crocodile (genus Crocodylus) in Africa. These taxa correspond roughly to an eastern/southern African species (Crocodylus niloticus) and a central/western African specie...

Trait loss represents an intriguing evolutionary problem, particularly when it occurs across independent lineages. Fishes in light-poor environments often evolve "troglomorphic" traits, including reduction or loss of both pigment and eyes. Here we investigate the genomic basis of trait loss in a blind and depigmented African cichlid, Lamprologus le...

This bibliography provides a collection of references that documents the evolution of studies evidencing interbreeding among Canis species in North America. Over the past several decades, advances in biology and genomic technology greatly improved our ability to detect and characterize species interbreeding, which has significance for understanding...

Background: Within the Culex pipiens mosquito complex, there are six contemporarily recognized taxa: Cx. quinquefasciatus, Cx. pipiens f. pipiens, Cx. pipiens f. molestus, Cx. pipiens pallens, Cx. australicus and Cx. globocoxitus. Many phylogenetic aspects within this complex have eluded resolution, such as the relationship of the two Australian e...

Members of the genus Bartonella are fastidious Gram-negative facultative intracellular bacteria that are typically transmitted by arthropod vectors. Several Bartonella spp. have been found to cause culture-negative endocarditis in humans. Here, we report the case of a 75-year old German woman with prosthetic valve endocarditis due to Bartonella was...

Anaplasma phagocytophilum is a Gram-negative obligate intracellular bacterium that replicates in neutrophil granulocytes. It is transmitted by ticks and causes tick-borne fever in domestic ruminants such as sheep, cattle and goats. However, in contrast to sheep and cattle little is known about the clinical course of infection in goats. We report he...

Within many biomes, the cause of phylogeographic structure remains unknown even across regions throughout North America, including within the biodiverse Chihuahuan Desert. For example, little is known about population structure or the timing of diversification of Chihuahuan endemics. This is due largely to the lack of population genomic studies wit...

In canines, transposon dynamics have been associated with a hyper-social behavioral syndrome, although the functional mechanism has yet to be described. We investigate the epigenetic and transcriptional consequences of these behavior-associated mobile element insertions in dogs and Yellowstone wolves. We posit that the transposons themselves may no...

Numerous animal lineages have expanded and diversified the opsin-based photoreceptors in their eyes underlying color vision behavior. However, the selective pressures giving rise to new photoreceptors and their spectral tuning remain mostly obscure. Previously, we identified a violet receptor (UV2) that is the result of a UV opsin gene duplication...

A key adaptation in insects for dealing with variable environmental conditions is the ability to diapause. The tiger swallowtail butterflies, Papilio glaucus and P. canadensis are ideal species to explore the genetic causes and population genetic consequences of diapause because divergence in this trait is believed to be a salient factor in maintai...

Rapid species radiations can obscure phylogenetic relationships between even distantly related species and lead to incorrect evolutionary inferences. For this reason, we examined evolutionary relationships among the three North American milkweed butterflies, Danaus plexippus, D. gilippus and D. eresimus using >400 orthologous gene sequences assembl...

Staphylococcus aureus is an important global health problem worldwide. There is still scarce information on the population structure of S. aureus strains in Asia, where the majority of the world population lives. This study characterizes the diversity of S. aureus strains in northern Vietnam through multilocus sequence typing (MLST). 85 carriage is...

Tiger swallowtail butterflies in the genus Papilio have an ability to visually distinguish between a large array of colors including those in the ultraviolet spectrum (UV). However, very little is known about UV reflectance patterns in these butterflies. Using a combination of UV photography and spectral analysis, we here show that several areas on...

Figure 1. A dark-morph female P. glaucus (top left). A yellow-morph female P. glaucus (top right). A male Battus philenor (bottom left). A male P. glaucus (bottom right). B. philenor is presumed to be a model for many mimetic butterflies including dark-morph female P. glaucus. All images are of the dorsal side of the butterfly. Note the near absenc...

Figure 2. Representative reflectance curves of three female P. glaucus wings in a predominately blue area, black area and a blue area that has been masked by black ink. The reflectance of the blue-covered areas is very similar to the naturally black areas. Also note the high peak between 300 and 400 nm for the blue coloration. This area indicates U...

Abstract It is generally thought that insects inhabiting lower latitudes are more severely impacted by changes in their thermal environment than are high latitude species. This is attributed to the wider range of temperatures to which high‐latitude species are exposed. By contrast, low‐latitude species have typically evolved in more thermally stabl...

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In animal species that have morphological polymorphisms maintained by unique or divergent selection pressures, understanding the preservation of shared traits is important for identifying the factors that are influencing overall evolutionary processes. In the Eastern tiger swallowtail butterfly, Papilio glaucus, females are dimorphic. One morph (‘d...

STRUCTURE analysis comparing (A) appalachiensis with the parental species, and (B) appalachiensis with lab hybrids and late flight canadensis. (TIF)