Maria Jose Perez-Alvarez

University of Chile · Departamento de Ciencias Ecológicas

Several lignocellulosic wastes are generated in the pulp and paper industry (PPI), such as small wood chips (pinchips) and paper sludge, presenting a high cellulose content suitable to be converted into biofuels or bio-products in a forest biorefinery scheme. In this work, two schemes of biorefinery were proposed for their valorization, processing...

Twentieth century industrial whaling pushed several species to the brink of extinction, with fin whales being the most impacted. However, a small, resident population in the Gulf of California was not targeted by whaling. Here, we analyzed 50 whole-genomes from the Eastern North Pacific (ENP) and Gulf of California (GOC) fin whale populations to in...

The presence and impacts of microplastics (MPs) are being extensively researched and reviewed, especially in the marine environment. However, mobility, transportation routes, and accumulation of leaching compounds such as additives in plastic waste including MPs are scarcely studied. Information regarding ecotoxicity and leachability of compounds r...

Cetacean strandings are regularly recorded along the coast of Chile. However, crucial information such as species and sex of the individuals involved in these events can often be difficult to assess. In this context, the use of molecular tools as a complementary method can improve a stranding database, particularly by correcting misidentifications...

Ecological information useful for conservation purposes have benefitted from recent and rapid advancements in genetic techniques, revealing unknown aspects of behavior, natural history, population structure and demography of several aquatic mammal species, many of them with conservation concerns. Molecular markers have been used to define managemen...

Commerson’s dolphins (Cephalorhynchus commersonii) are separated into the subspecies C. c. commersonii, found along southern South America (SA) and the Falkland Islands/Islas Malvinas (FI/IM), and C. c. kerguelenensis, restricted to the subantarctic Kerguelen Islands (KI). Following the dispersal model proposed for the genus, the latter is thought...

With the entry into force of the Fish and Fish Products Import Provisions of the United States Marine Mammal Protection Act (MMPA), countries that export such products to the U.S. market could face significant challenges. Provisions include that fish and fish products exported to the U.S. must come from fisheries with a regulatory program comparabl...

• The sei whale (Balaenoptera borealis) presents a disjointed geographic distribution. Significant genetic divergence between sei whales from the North Atlantic (NA) and North Pacific (NP) have been recorded; however, limited samples from the Southern Hemisphere (SH) have precluded a global analysis. • The largest recorded mass mortality event occu...

Four fin whale sub-species are currently considered valid: Balaenoptera physalus physalus in the North Atlantic, B. p. velifera in the North Pacific, B. p. quoyi and B. p. patachonica in the Southern Hemisphere. The last, not genetically validated, was described as a pygmy-type sub-species, found in low to mid latitudes of the Southern Hemisphere....

We report a new mark-recapture-based population estimate for the humpback whale Breeding Stock G (BSG), defined by breeding grounds on the northwestern coast of South America and southwestern Central America and feeding grounds around the Antarctic Peninsula and southern Chile. Photographic fluke catalogs from 23 research groups working in both bre...

Whale-watching (WW) is an activity which has been increasing worldwide due to the great interest of tourists and the economic benefits it provides to local communities. However, it has been reported that this activity affects the behavioral patterns of some cetaceans, although for some species such as the fin whale (Balaenoptera physalus) this has...

Whale-watching (WW) is an activity which has been increasing worldwide due to the great interest of tourists and the economic benefits it provides to local communities. However, it has been reported that this activity affects the behavioral patterns of some cetaceans, although for some species such as the fin whale (Balaenoptera physalus) this has...

En el marco de la investigación formal asociada a la mortalidad de ballenas en el Golfo de Penas en la Región de Aysén, el siguiente informe entrega los antecedentes técnicos y científicos junto con las hipótesis de posibles causas de la mortalidad de estos animales en el área de interés.

The matrilineal long-finned pilot whale presents an antitropical distribution and is divided into two subspecies, one in the temperate seas of the Southern Hemisphere and the other restricted to the North Atlantic and Mediterranean. Until now, population genetic and phylogeographic studies have included localities of most of its Northern Hemisphere...

[This corrects the article DOI: 10.1371/journal.pone.0222498.].

We test the ability of Very High Resolution satellite (VHR) imagery to detect stranded whales using both manual and automated methods. We use the 2015 mass mortality event in the Gulf of Penas locality, central Patagonia, Chile, as an initial case study. This event was the largest known mass mortality of baleen whales, with at least 343 whales, mai...

• Fin whales (Balaenoptera physalus) have been documented along the coast of Chile since the early 20th century; however, information on their ecology and movement patterns remains poorly known. • In the spring of 2015, six implantable satellite tags were deployed on fin whales around the marine reserves of Isla Chañaral and Islas Choros‐Damas (app...

Coastal resident and pelagic nonresident bottlenose dolphins, Tursiops truncatus, have been described in north-central Chile. Using long-term residence data (over 13 years of photo-identification) and genetic mtDNA information, we analysed the social dynamics through time and the genetic variation of this long-term resident population, and evaluate...

Biotic and abiotic factors determine presence and habitat use pattern of individuals within a population. In this study, presence, behavior, and resighting patterns of transient bottlenose dolphins (Tursiops truncatus) were evaluated in relation to upwelling and downwelling events in a marine reserve in North-Central Chile, between 2005 and 2009. T...

The South American sea lion (Otaria flavescens) is widely distributed along the southern Atlantic and Pacific coasts of South America with a history of significant commercial exploitation. We aimed to evaluate the population genetic structure and the evolutionary history of South American sea lion along its distribution by analyses of mitochondrial...

List of individuals that bear each mitochondrial DNA control region haplotype, and the respective GenBank number. Absolute frequency in the sample and geographic distribution of haplotypes for South American sea lion. (DOCX)

List of individuals that bear each mitochondrial DNA cytochrome b haplotype. Absolute frequency in the sample and geographic distribution of haplotypes for South American sea lion. (DOCX)

Extended Bayesian skyline plot showing the effective population size fluctuation of South American sea lions populations throughout time based on the mtDNA control region. Internal dashed lines are median estimates and thin lines and coloured areas are the 95% Central Posterior Density (CPD) intervals. Nef, effective female population size (log sca...

Extended Bayesian skyline plot showing the effective population size fluctuation of South American sea lions populations throughout time based on the mtDNA control region. Internal black dashed lines are median estimates and thin lines are the 95% CPD intervals. Thin green lines are the individual population trajectories. Nef, effective female popu...

Species and access number of sequences downloaded from GenBank used to estimate the Bayesian phylogeny (Fig 3). (DOCX)

Genetic diversity of South American sea lions for each locus per clustered localities and for the species as whole. (A) Number of alleles, (E) = exclusive alleles, (Ho) observed heterozygosity, (He) expected heterozygosity.* Loci that deviated from HW equilibrium after Bonferroni correction. (DOCX)

Plots from STRUCTURE HARVESTER performed with Evanno’s method. (A) Highest value of (ΔK) = 79.20 on K = 2. (B) Mean of estimated Ln probability of data (± sd) averaging ten runs from K = 1 to K = 10. (TIF)

STRUCTURE bar plot from the test for migrants or hybrids between oceans using the sampling locations (in this case the ocean basin) and the USEPOPINFO model. Each bar is one individual and each colour represents the assignment probability of the individual to belong to that genetic cluster. (TIF)

While large mass mortality events (MMEs) are well known for toothed whales, they have been rare in baleen whales due to their less gregarious behaviour. Although in most cases the cause of mortality has not been conclusively identified, some baleen whale mortality events have been linked to bio-oceanographic conditions, such as harmful algal blooms...

National Fisheries Service cruise report.

While large mass mortality events (MMEs) are well known for toothed whales, they have been rare in baleen whales due to their less gregarious behaviour. Although in most cases the cause of mortality has not been conclusively identified, some baleen whale mortality events have been linked to bio-oceanographic conditions, such as harmful algal blooms...

While large mass mortality events (MMEs) are well known for toothed whales, they have been rare in baleen whales due to their less gregarious behaviour. Although in most cases the cause of mortality has not been conclusively identified, some baleen whale mortality events have been linked to bio-oceanographic conditions, such as harmful algal blooms...

While large mass mortality events (MMEs) are well known for toothed whales, they have been rare in baleen whales due to their less gregarious behaviour. Although in most cases the cause of mortality has not been conclusively identified, some baleen whale mortality events have been linked to bio-oceanographic conditions, such as harmful algal blooms...

The complementarity of historical and contemporary processes contributes to understanding the genetic structure of continuously distributed marine species with high dispersal capabilities. Cephalorhynchus eutropia, has a continuous coastal distribution with strong genetic differentiation identified by nuclear DNA markers. We explored the historical...

Understanding genetic differentiation and speciation processes in marine species with high dispersal capabilities is challenging. The Chilean dolphin, Cephalorhynchus eutropia, is the only endemic cetacean of Chile and is found in two different coastal habitats: a northern habitat with exposed coastlines, bays and estuaries from Valparaíso (33°02'S...

In a polygynous mating system males and females have different reproductive strategies; so it is expectable that both sexes have evolved different reproductive behavioral responses to maximize their reproductive success. We analyze the behavior of different sex/age classes of Otaria flavescens during breeding (BS) and non-breeding seasons (NBS) at...

In a polygynous mating system males and females have different reproductive strategies; so it is expectable that both sexes have evolved different reproductive behavioral responses to maximize their reproductive success. We analyze the behavior of different sex/age classes of Otaria flavescens during breeding (BS) and non-breeding seasons (NBS) at...

El presente documento da cuenta de las actividades y resultados durante toda la ejecución del proyecto: Implementación del Plan de Manejo del Santuario de la Naturaleza de Cobquecura. Concurso Público: Conservación de ecosistemas y gestión de áreas de alto valor para la conservación del Ministerio de Medio Ambiente-Chile. Se destaca en base a nuevo...

In the South American sea lion (Otaria flavescens), daily fluctuations in abundance have been analyzed based on sequential counts of the number of animals hauled-out. However, no studies have analyzed haul-out activity in relation to an annual cycle or according to different age/sex classes. The objective of this study was to determine the daily an...

The onshore distribution and abundance of the South American sea lion Otaria flavescens along the central Chilean coast was estimated during the period January-February 2007. Additionally, changes in population abundance during the period 1970-2007 were examined. Population surveys were based on photographs taken from boats or aircraft. A total of...

The onshore distribution and abundance of the South American sea lion Otaria flavescens along the central Chilean coast was estimated during the period January-February 2007. Additionally, changes in population abundance during the period 1970-2007 were examined. Population surveys were based on photographs taken from boats or aircraft. A total of...

The onshore distribution and abundance of the South American sea lion Otaria flavescens along the central Chilean coast was estimated during the period January-February 2007. Additionally, changes in population abundance during the period 1970-2007 were examined. Population surveys were based on photographs taken from boats or aircraft. A total of...

From January 2007 to March 2008, we examined variation in the abundance of the South American sea lion Otaria flavescens in Chañaral Island breeding colony by sex, age-class, and reproductive seasonality. The number of sea lions on land was highest during the breeding season. This variation was mainly influenced by the number of adult females, beca...

From January 2007 to March 2008, we examined variation in the abundance of the South American sea lion Otaria flavescens in Chañaral Island breeding colony by sex, age-class, and reproductive seasonality. The number of sea lions on land was highest during the breeding season. This variation was mainly influenced by the number of adult females, beca...

The Chilean dolphin, Cephalorhynchus eutropia, is an endemic species distributed along the central‐southern coast of Chile. Biological and ecological knowledge about this species is insufficient; it is catalogued as Data Deficient “DD” by the World Conservation Union. This study provides information on the species’ occurrence and distribution along...

A longstanding competition for fishery resources has existed in Chile between the South American sea lion (Otaria flavescens) and artisanal (small-scale) fisheries. This competition is viewed as a conflict by the fishermen because sea lions prey on fish caught in their fishing gear, often causing its damage. The objective of the study was to descri...

This paper reports the presence and feeding activity of fin whales (Balaenoptera physalus) during the austral summers of 2004 and 2005 in coastal waters near the Reserva Nacional Pinguino de Humboldt, north of Chile. The main prey item of the species was identified as the euphausiid Euphausia mucronata. The presence of B. phy-salus is associated wi...

Con anterioridad, la orca falsa Pseudorca crassidens ha sido escasamente reportada en aguas chilenas. En esta nota damos a conocer tres nuevos registros. El primero corresponde a un grupo observado junto a tursiones (Tursiops truncatus) y calderones de aleta corta (Globicephala macrorhynchus) en bahía Cumberland, isla Robinson Crusoe frente a Chile...

Con anterioridad, la orca falsa Pseudorca crassidens ha sido escasamente reportada en aguas chilenas. En esta nota damos a conocer tres nuevos registros. El primero corresponde a un grupo observado junto con tursiones (Tursiops truncatus) y calderones de aleta corta (Globicephala macrorhynchus) en bahía Cumberland, isla Robinson Crusoe frente a Chi...