The molecular composition of electrophoretically homogeneous preparations of chloroplast cytochrome b559 was examined. The partial specific volume was 0.91; the hydrodynamic molecular weight, likely as a complex with Triton X-100, was 117,000. The equivalent dry weight per mole of heme, using Triton-depleted samples, was 111,000. The protein content (41%) was equivalent to 45,900 g/mol of heme.
... [Show full abstract] Since only one size of polypeptide chain was found [5600(±1000)] about eight small chains were calculated to be present per one heme and thus per molecule. N-terminal analysis revealed at least three kinds of polypeptide chains (Glu, Asp, and Thr as N-terminals). The content of noncovalently linked lipids 56(±6)%, consisted of only four lipid components, thus representing a simple lipid composition relative to that of the original membranes. Only two nonpolar lipids were found: chlorophyll a (3%, 4 mol/heme) and β-carotene (1.6%, 3 mol/heme); to-copherols, plastoquinones, and chlorophyll b being absent. Two unknown polar lipids, one major (about 40%) and one minor (about 5-8%), comprised most of the lipid found. The Triton X-100 content was less than 5-6% and migrated as a single spot different from those of the two unknown polar lipids. Neither polar lipid was a glycolipid. The major polar lipid was not a phospholipid, but the minor component might have been a phospholipid. Each of the unknowns migrated chromatographically like unknown polar lipids of chloroplast-grana membranes. Cytochrome 6559 contained no non-heme iron and no detectable hexose. Triton X-100-4 M urea (pH 8), the extracting solvent used to isolate cytochrome b559, is suggested as potentially useful for isolating membrane lipoproteins in undenatured form.