Loïc Pellissier

ETH Zurich/ WSL Birmensdorf · Institut f. Terrestrische Ökosysteme/Landscape Dynamics

Throughout much of the Quaternary Period, inhospitable environmental conditions above the Arctic Circle have been a formidable barrier separating most marine organisms in the North Atlantic from those in the North Pacific1,2. Rapid warming has begun to lift this barrier3, potentially facilitating the interchange of marine biota between the two seas...

The most prominent pattern in global marine biogeography is the biodiversity peak in the Indo-Australian Archipelago. Yet the processes that underpin this pattern are still actively debated. By reconstructing global marine paleoenvironments over the past 3 million years on the basis of sediment cores, we assessed the extent to which Quaternary clim...

Climate-driven range fluctuations during the Pleistocene have continuously reshaped species distribution leading to populations of contrasting genetic diversity. Contemporary climate change is similarly influencing species distribution and population structure, with important consequences for patterns of genetic diversity and species’ evolutionary...

Understanding drivers of biodiversity patterns is of prime importance in this era of severe environmental crisis. More diverse plant communities have been postulated to represent a larger functional trait-space, more likely to sustain a diverse assembly of herbivore species. Here, we expand this hypothesis to integrate environmental, functional and...

In the face of escalating global environmental changes, understanding the robustness of ecological networks against sustained species losses is paramount to devising effective biodiversity conservation strategies. To explore the impacts of habitat-specific species losses on large-scale food web robustness, we used a trophic metaweb of 8,846 vertebr...

The exceptional diversity of shallow‐water marine fishes contributes to the nutrition of millions of people worldwide through coastal wild‐capture fisheries, with different species having diverse nutritional profiles. Fishes in ecosystems are reservoirs of micronutrients with benefits to human health. Yet, the amount of micronutrients contained in...

Mountainous regions contain some of the most dynamic landscapes in the world and host a majority of the global biodiversity hotspots. The Hengduan Mountains, located at the syntax of Eurasia and India, have a complex geological history associated with the hyperdiverse assemblage of species. Tectonics and geomorphic and climate processes in the Heng...

Species distribution models (SDMs) aim to predict the distribution of species by relating occurrence data with environmental variables. Recent applications of deep learning to SDMs have enabled new avenues, specifically the inclusion of spatial data (environmental rasters, satellite images) as model predictors, allowing the model to consider the sp...

Climate projections for continental Europe indicate drier summers, increased annual precipitation, and less snowy winters, which are expected to cause shifts in species' distributions. Yet, most regions/countries currently lack comprehensive climate‐driven biodiversity projections across taxonomic groups, challenging effective conservation efforts....

Understanding how ecological assemblages vary in space and time is essential for advancing our knowledge of biodiversity dynamics and ecosystem functioning. Metabarcoding of environmental DNA (eDNA) is an efficient method for documenting biodiversity changes in both marine and terrestrial ecosystems. However, current methods fail to detect and disp...

Anthropogenic activities are eroding biodiversity and its contributions to nature and people worldwide. Yet, the dual imperative to protect nature and sustain human well-being raises potential trade-offs that remain to be quantified. Using standardized fish surveys across 1,237 tropical reefs worldwide, we converted the presence and abundance data...

Understanding the intricate dynamics of biodiversity within and across riverine ecosystems, influenced by geological history and environmental factors, is crucial for effective conservation and management strategies. Italy, particularly the Ligurian region, harbors diverse freshwater fish communities and populations shaped by unique geological and...

Environmental pressures on species can cascade within food webs and even extend beyond individual ecosystems to interconnected systems at large spatial scales. To facilitate the exploration of these dynamics, we construct a data-based national trophic meta-food web (henceforth metaweb), that includes well-documented vertebrates, invertebrates, and...

The conservation and restoration of forest ecosystems require detailed knowledge of the native plant compositions. Here, we map global forest tree composition and assess the impacts of historical forest cover loss and climate change on trees. The global occupancy of 10,590 tree species reveals complex taxonomic and phylogenetic gradients determinin...

The rapid loss of biodiversity in freshwater systems asks for a robust and spatially explicit understanding of species' occurrences. As two complementing approaches, habitat suitability models provide information about species' potential occurrence, while environmental DNA (eDNA) based assessments provide indication of species' actual occurrence. I...

Islands have been used as model systems to study ecological and evolutionary processes, and they provide an ideal set‐up for validating new biodiversity monitoring methods. The application of environmental DNA metabarcoding for monitoring marine biodiversity requires an understanding of the spatial scale of the eDNA signal, which is best tested in...

Clownfish (subfamily Amphiprioninae) are an iconic group of coral reef fish that evolved a mutualistic interaction with sea anemones, which triggered the adaptive radiation of the clade. Within clownfishes, the “skunk complex” is particularly interesting. Besides ecological speciation, interspecific gene flow and hybrid speciation are thought to ha...

Ecosystem response to climate change is complex. In order to forecast ecosystem dynamics, we need high-quality data on changes in past species abundance that can inform process-based models. Sedimentary ancient DNA (sedaDNA) has revolutionised our ability to document past ecosystems' dynamics. It provides time series of increased taxonomic resoluti...

The Hengduan Mountains (HM) are located on the southeastern edge of the Tibetan Plateau and feature high mountain ridges (>6,000 m MSL) separated by deep valleys. The HM region also features an exceptionally high biodiversity, believed to have emerged from the topography interacting with the climate. To investigate the role of the HM topography on...

Urban ecosystems are formed by pronounced socio‐ecological gradients, which are distinct from other ecosystems and can simultaneously filter and promote taxa, ultimately affecting their interactions. However, the strength of the effect of filtering and facilitation across the different trophic levels could vary among biotic and abiotic factors. Her...

Madagascar exhibits high endemic biodiversity that has evolved with sustained and stable rates of speciation over the past several tens of millions of years. The topography of Madagascar is dominated by a mountainous continental rift escarpment, with the highest plant diversity and rarity found along the steep, eastern side of this geographic featu...

To meet the COP15 biodiversity framework in the European Union (EU), one target is to protect 30% of its land by 2030 through a resilient transnational conservation network. The European Alps are a key hub of this network hosting some of the most extensive natural areas and biodiversity hotspots in Europe. Here we assess the robustness of the curre...

Standard and easily accessible cross-thematic spatial databases are key resources in ecological research. In Switzerland, as in many other countries, available data are scattered across computer servers of research institutions and are rarely provided in standard formats (e.g., different extents or projections systems, inconsistent naming conventio...

Human intervention often alters the availability of habitat for biodiversity. The conservation of biodiversity therefore requires an optimized habitat management. In forests, dead wood represents one of the most important habitats and in boreal and temperate regions around 25% of forest species depend on it (= saproxylic species). Increasing the am...

Climate projections predict major changes in alpine environments by the end of the 21st century. To avoid climate-induced maladaptation and extinction, many animal populations will either need to move to more suitable habitats or adapt in situ to novel conditions. Since populations of a species exhibit genetic variation related to local adaptation,...

Background Biodiversity exists at different levels of organisation: e.g. genetic, individual, population, species, and community. These levels of organisation all exist within the same system, with diversity patterns emerging across organisational scales through several key processes. Despite this inherent interconnectivity, observational studies r...

Nonlinear partial differential equations (PDEs) are used to model dynamical processes in a large number of scientific fields, ranging from finance to biology. In many applications standard local models are not sufficient to accurately account for certain non-local phenomena such as, e.g., interactions at a distance. Non-local nonlinear PDE models c...

In river systems worldwide, land cover changes have been identified as major drivers of biodiversity change. Quantifying how terrestrial land cover impacts riverine diversity requires local biodiversity assessments. In this study, we investigated the association of terrestrial land cover and the corresponding riverine fish species communities using...

Freshwater biodiversity is critically affected by human modifications of terrestrial land use and land cover (LULC). Yet, knowledge of the spatial extent and magnitude of LULC-aquatic biodiversity linkages is still surprisingly limited, impeding the implementation of optimal management strategies. Here, we compiled fish diversity data across a 160,...

Ecosystem response to climate change is complex. In order to forecast ecosystem dynamics, we need high-quality data on changes in past species abundance that can inform process-based models. Ancient DNA has revolutionised our ability to document past ecosystems' dynamics. It provides time-series of increased taxonomic resolution compared to microfo...

South America is home to the highest freshwater fish biodiversity on Earth, and the hotspot of species richness is located in the western Amazon basin. The location of this hotspot is enigmatic, as it is inconsistent with the pattern observed in river systems across the world of increasing species richness towards a river’s mouth. Here we investiga...

Climate’s effect on global biodiversity is typically viewed through the lens of temperature, humidity and resulting ecosystem productivity1,2,3,4,5,6. However, it is not known whether biodiversity depends solely on these climate conditions, or whether the size and fragmentation of these climates are also crucial. Here we shift the common perspectiv...

Mountains are among the most biodiverse regions on the planet, and how these landforms shape diversification through the interaction of biological traits and geo-climatic dynamics is integral to understanding global biodiversity. In this study, we investigate the dual roles of climate change and mountain uplift on the evolution of a hyper-diverse r...

Environmental DNA (eDNA) metabarcoding is a method to detect taxa from environmental samples. It is increasingly used for marine biodiversity surveys. As it only requires water collection, eDNA metabarcoding is less invasive than scientific trawling and might be more cost effective. Here, we analysed data from both sampling methods applied in the s...

Environmental DNA (eDNA) metabarcoding provides an efficient approach for documenting biodiversity patterns in marine and terrestrial ecosystems. The complexity of these data prevents current methods from extracting and analyzing all the relevant ecological information they contain, and new methods may provide better dimensionality reduction and cl...

The metabolome is the biochemical basis of plant form and function, but we know little about its macroecological variation across the plant kingdom. Here, we used the plant functional trait concept to interpret leaf metabolome variation among 457 tropical and 339 temperate plant species. Distilling metabolite chemistry into five metabolic functiona...

The geographic distribution of plant diversity matches the gradient of habitat heterogeneity from lowlands to mountain regions. However, little is known about how much this relationship is conserved across scales. Using the World Checklist of Vascular Plants and high‐resolution biodiversity maps developed by species distribution models, we investig...

Biodiversity loss in river ecosystems is much faster and more severe than in terrestrial systems, and spatial conservation and restoration plans are needed to halt this erosion. Reliable and highly resolved data on the state of and change in biodiversity and species distributions are critical for effective measures. However, high‐resolution maps of...

Understanding how different taxa respond to abiotic characteristics of the environment is of key interest for understanding the assembly of communities. Yet, whether eDNA data will suffice to accurately capture environmental imprints has been the topic of some debate. In this study, we characterised patterns of species occurrences and co-occurrence...

Monitoring of terrestrial and aquatic species assemblages at large spatial scales based on environmental DNA (eDNA) has the potential to enable evidence-based environmental policymaking. The spatial coverage of eDNA-based studies varies substantially, and the ability of eDNA metabarcoding to capture regional biodiversity remains to be assessed; thu...

Arctic fjords are experiencing rapid environmental shifts due to climate change, which may have significant impacts on marine biodiversity and ecosystem functioning. However, the impact of climate change on fjord biodiversity is difficult to quantify given the low accessibility and high cost to sample these areas. In this study, we sampled location...

Faunal turnover in Indo-Australia across Wallace's Line is one of the most recognizable patterns in biogeography and has catalyzed debate about the role of evolutionary and geoclimatic history in biotic interchanges. Here, analysis of more than 20,000 vertebrate species with a model of geoclimate and biological diversification shows that broad prec...

Floristic regions reflect the geographic organization of floras and provide essential tools for biological studies. Previous global floristic regions are generally based on floristic endemism, lacking a phylogenetic consideration that captures floristic evolution. Moreover, the contribution of tectonic dynamics and historical and current climate to...

Abstract Reliable and comparable estimates of biodiversity are the foundation for understanding ecological systems and informing policy and decision‐making, especially in an era of massive anthropogenic impacts on biodiversity. Environmental DNA (eDNA) metabarcoding is at the forefront of technological advances in biodiversity monitoring, and the l...

Aim Coastal fishes have a fundamental role in marine ecosystem functioning and contributions to people, but face increasing threats due to climate change, habitat degradation and overexploitation. The extent to which human pressures are impacting coastal fish biodiversity in comparison with geographic and environmental factors at large spatial scal...

Aim Significant changes in species elevational ranges in mountains have been repeatedly documented, yet the direction, magnitude and drivers of these shifts remain controversial. Presently, there is still lacking evidence about the general nature of species elevational range shifts in eastern Eurasia in response to anthropogenic climate change. By...

1. Metabarcoding of environmental DNA (eDNA) has recently improved our understanding of biodiversity patterns in marine and terrestrial ecosystems. However, the complexity of these data prevents current methods to extract and analyze all the relevant ecological information they contain. Therefore, ecological modeling could greatly benefit from new...

Predicting contemporary and future species distributions is relevant for science and decision making, yet the development of high‐resolution spatial predictions for numerous taxonomic groups and regions is limited by the scalability of available modelling tools. Uniting species distribution modelling (SDM) techniques into one high‐performance compu...

To meet the COP15 biodiversity framework in Europe, one target is to protect 30% of land by 2030 through a resilient transnational conservation network 1,2 . The European Alps are a key hub of this network hosting one of the most extensive natural areas and hotspots of plant biodiversity in Europe 3,4 . Here, we assess the robustness of the conserv...

Invertebrate herbivory is a crucial process contributing to the cycling of nutrients and energy in terrestrial ecosystems. While the function of herbivory can decrease with land‐use intensification, the underlying mechanisms remain unclear. We hypothesize that land‐use intensification impacts invertebrate leaf herbivory rates mainly through changes...

The metabolome is the biochemical basis of plant form and function, but we know little about its macroecological variation across the plant kingdom. Here, we used the plant functional trait concept to interpret leaf metabolome variation among 457 tropical and 339 temperate plant species. Distilling metabolite chemistry into five metabolic functiona...

1. Selecting the best subset of covariates out of a panel of many candidates is a key and highly influential stage of the species distribution modelling process. Yet, there is currently no commonly accepted and widely adopted standard approach by which to perform this selection. 2. We introduce a two-step “embedded” covariate selection procedure a...

On-going land-use change has profound impacts on biodiversity by filtering species that cannot survive in disturbed landscapes and potentially altering biotic interactions. In particular, how land-use change reshapes biotic interactions remains an open question. Here, we used selectivity experiments with nectar feeders in natural and converted fore...

The diversification of alpine species has been modulated by their climatic niches interacting with changing climatic conditions. The relative roles of climatic niche conservatism promoting geographical speciation and of climatic niche diversification are poorly understood in diverse temperate groups. Here, we investigate the climatic niche evolutio...

Aim Evaluating the similarity of diversity patterns across micro‐ to macroevolutionary scales in natural communities, such as species–genetic diversity correlations (SGDCs), may inform on processes shaping community assembly. However, whether SGDCs not only hold across communities but also across lineages has never been explored so far. Here we inv...

Among global change drivers, deforestation not only erodes biodiversity but also the functions that species play in an ecosystem. The maintenance of many ecosystem functions, such as pollination, depends on the functional roles fulfilled by interacting plants and animals. Given that plants and animals respond differently to deforestation, a perspec...

Urban ecosystems are associated with socio-ecological conditions that can filter and promote taxa. However, the strength of the effect of ecological filtering on biodiversity could vary among biotic and abiotic factors. Here, we investigate the effects of habitat amount, temperature, and host-enemy biotic interactions in shaping communities of cavi...

Human impacts such as habitat loss, climate change and biological invasions are radically altering biodiversity, with greater effects projected into the future. Evidence suggests human impacts may differ substantially between terrestrial and freshwater ecosystems, but the reasons for these differences are poorly understood. We propose an integrativ...

A multitude of physical and biological processes on which ecosystems and human societies depend are governed by the climate, and understanding how these processes are altered by climate change is central to mitigation efforts. We developed a set of climate-related variables at as yet unprecedented spatiotemporal detail as a basis for environmental...

Understanding the traits mediating species' responses to climate change is a cornerstone for predicting future community composition and ecosystem function. Although species' eco‐physiological properties determine their response to environmental change, most trait‐based studies focus on a small subset of easily measured morphological traits as prox...