Lei Chen

• Nanjing Agricultural University

Eriophyoidea represents a highly diverse superfamily of herbivorous mites in the Acariformes, including over 5,000 named species that are distributed worldwide. However, the lack of chromosome-level genome prevents our understanding of the evolution in this group. Here, we report the first chromosome-level genome assembly of Setoptus koraiensis usi...

The diet breadth of generalist herbivores when compared to specialists tends to be associated with greater transcriptional plasticity. Here, we consider whether it may also contribute to variation in host range among two generalists with different levels of polyphagy. We examined two related polyphagous spider mites with different host ranges, Tetr...

The two-spotted spider mite (Tetranychus urticae Koch, TSSM) is recognized as one of the most problematic spider mite pests. However, the precise gene expression patterns across its key developmental stages remain elusive. Here, we performed a comprehensive transcriptome analysis of TSSM eggs, nymphs and adult females using publicly available RNA s...

Despite the rapid advances in sequencing technology, limited genomic resources are currently available for phytophagous spider mites, which include many important agricultural pests. One of these pests is Tetranychus piercei (McGregor), a serious banana pest in East Asia exhibiting remarkable tolerance to high temperature. In this study, we assembl...

Mitochondrial DNA (mtDNA) has been widely used as a valuable tool in studies related to evolution and population genetics, under the implicit assumption of neutral evolution. However, recent studies suggest that natural selection also plays a significant role in shaping mitochondrial genome evolution, although the specific driving forces remain elu...

Microbes play a key role in the biology, ecology, and evolution of arthropods. Despite accumulating data on microbial communities in arthropods that feed on plants using piercing-sucking mouthparts, we still lack a comprehensive understanding of the composition and assembly factors of the microbiota, particularly in field-collected spider mites. He...

The phytophagous mite Tetranychus truncatus is a serious pest in East Asia but has a relatively narrower host range than the pest mite Tetranychus urticae, which can feed on over 1200 plant species. Here, we generated a high-quality chromosomal level genome of T. truncatus and compared it with that of T. urticae, with an emphasis on the genes relat...

Communities of bacteria, especially symbionts, are vital for the growth and development of insects and other arthropods, including Bemisia tabaci MED, a destructive invasive insect pest. However, the infection density patterns and influence factors of bacteria, which mainly include symbionts, in whiteflies are still largely unclear. To reveal the d...

The fall armyworm ( Spodoptera frugiperda ), a destructive pest that originated in South and North America, spread to China in early 2019. Controlling this invasive pest requires an understanding of its population structure and migration patterns, yet the invasion genetics of Chinese S. frugiperda is not clear. Here, using the mitochondrial cytochr...

BACKGROUND The small brown planthopper, Laodelphax striatellus (Fallén), is an important pest of rice. It is suspected of migrating over the sea from China to Japan. However, where in China it comes from and how it affects Japanese populations remain unclear. RESULTS Here, we studied the genetic structure of 15 L. striatellus populations sampled f...

Background The two-spotted spider mite, Tetranychus urticae , is a major agricultural pest with a cosmopolitan distribution, and its polyphagous habits provide a model for investigating herbivore-plant interactions. There are two body color forms of T. urticae with a different host preference. Comparative genomics and transcriptomics are used here...

Local adaptation is particularly likely in invertebrate pests that typically have short generation times and large population sizes, but there are few studies on pest species investigating local adaptation and separating this process from contemporaneous and historical gene flow. Here we use a population genomic approach to investigate evolutionary...

Background: Attributes of pest species like host range are frequently reported as being evolutionarily constrained and showing phylogenetic signal. Because these attributes in turn could influence the abundance and impact of species, phylogenetic information could be useful in predicting the likely status of pests. In this study, we used regional...

The center–periphery hypothesis (CPH) states that the genetic diversity, genetic flow, and population abundance of a species are highest at the center of the species’ geographic distribution. However, most CPH studies have focused on the geographic distance and have ignored ecological and historical effects. Studies using niche models to define the...

Attributes of pest species like host range are frequently reported as being evolutionarily constrained and showing phylogenetic signal. Because these attributes in turn could influence the abundance and impact of species, phylogenetic information could be useful in predicting the likely status of pests. In this study, we used regional (China) and g...

The red tomato spider mite, Tetranychus evansi Baker & Pritchard, is a newly emerged and globally invasive pest of solanaceous plants. In this study, the complete mitochondrial genome of T. evansi was sequenced using Illumina Hiseq technology. The complete mitochondrial genome of T. evansi is a typical circular DNA with a length of 13,064 bp, which...

Attributes of pest species like host range are frequently reported as being evolutionarily constrained and showing phylogenetic signal. Because these attributes in turn could influence the abundance and impact of species, phylogenetic information could be useful in predicting the likely status of pests. In this study, we used regional (China) and g...

While it has been proposed in several taxa that the mitochondrial genome is associated with adaptive evolution to different climatic conditions, making links between mitochondrial haplotypes and organismal phenotypes remains a challenge. Mito‐nuclear discordance occurs in the small brown planthopper (SBPH), Laodelphax striatellus, with one mitochon...

Deciphering genetic structure and inferring migration routes of insects with high migratory ability have been challenging, due to weak genetic differentiation and limited resolution offered by traditional genotyping methods. Here, we tested the ability of double digest restriction-site associated DNA sequencing (ddRADseq)-based single nucleotide po...

Tetranychus pueraricola is a newly reported spider mite that occurs frequently in mainland China. It is possible that this species was introduced from elsewhere and became a serious pest recently. However, the correct identification of red-pigmented spider mites has repeatedly proven problematic. There is also the possibility that T. pueraricola in...

Understanding pest species composition and their geographic distribution of important spider mites is fundamental and indispensable to establish an integrated pest management program. From a long-term survey during 2008–2017 in mainland China, we found that Tetranychus truncatus was the most frequently sampled Tetranychus spider mite (48.5%), follo...

The taxonomic status and phylogenetic affinities of Mymaridae and Scelionidae are controversial, based on similarities between these families in the characteristics of adults, larvae, and eggs. In this study, we sequenced the mitochondrial (mt) genomes of representatives from these two families and found that the derived secondary structure of tRNA...

A new outbreak pest, Athetis lepigone (Möschler) (Lepidoptera: Noctuidae), has caused severe economic loss in maize crops in China. In order to conduct population genetics study with a more polymorphic and scientific mitochondrial marker, we sequenced the complete mitochondrial genomes of 13 different A. lepigone individuals. Intraspecific comparis...

Athetis lepigone (Möschler) (Lepidoptera: Noctuidae) is a new outbreak pest in China. Consequently, it is unclear whether the emergence and spread of the outbreak of this pest are triggered by rapid in situ population size increases in each outbreak area, or by immigrants from a potential source area in China. In order to explore the outbreak proce...