
Kristian MeissnerFinnish Environment Institute | ymparisto · Marine and Freshwater Solutions
Kristian Meissner
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87
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Introduction
At Syke, I am the developmentment manager of the Marine and Freshwater Solutions unit and head of Jyväskylä office. I am a coordinator in the European research institute network PEER (www.peer.eu) and convenor of CEN TC230/WG28 "DNA and eDNA methods" and covneor of ISO TC147/SC5/28 "eDNA, DNA and RNA methods".
Additional affiliations
January 2003 - May 2005
January 1996 - January 2003
Publications
Publications (87)
Human activities are causing rapid biodiversity loss across ecosystems, affecting human well-being and crucial ecosystem services. Traditional biodiversity monitoring tools cannot keep up with the increasing demands of monitoring due to their limited spatial or temporal coverage, high costs, and lack of taxonomic expertise. Thus, implementation of...
To address the biodiversity crisis, global and regional policy frameworks like the Kunming-Montreal Global Biodiversity Framework and the European Green Deal demand to monitor biodiversity. Despite these efforts, existing approaches for monitoring biodiversity remain fragmented and lack data integration. Here, we review and synthesize crucial infor...
Human activities are causing rapid biodiversity loss across ecosystems, affecting human wellbeing and crucial ecosystem services. Traditional biodiversity monitoring tools cannot keep up with the increasing demands of monitoring due to their limited spatial or temporal coverage, high costs, and lack of taxonomic expertise. Thus, implementation of n...
Rivers and streams contribute to global carbon cycling by decomposing immense quantities of terrestrial plant matter. However, decomposition rates are highly variable, and large-scale patterns and drivers of this process remain poorly understood. Using a cellulose-based assay to reflect the primary constituent of plant detritus, we generated a pred...
This presentation was delivered as part of the special session "S11 IUCN SSC Task Force on Global Freshwater Macroinvertebrate Sampling Protocols (GLOSAM)"
Monitoring programs at sub-national and national scales lack coordination, harmonization, and systematic review and analysis at continental and global scales, and thus fail to adequately assess and evaluate drivers of biodiversity and ecosystem degradation and loss at large spatial scales. Here we review the state of the art, gaps and challenges in...
Efforts to renew marine ecosystem monitoring to include advanced technology and cost-effective methods have been repeatedly called for. The current environmental legislation in European Union (EU) requires also ecosystem monitoring beyond the scope of conventional methods and sampling strategies. Despite several studies showing the benefits of new...
Recent advances in molecular biomonitoring open new horizons for aquatic ecosystem assessment. Rapid and cost-effective methods based on organismal DNA or environmental DNA (eDNA) now offer the opportunity to produce inventories of indicator taxa that can subsequently be used to assess biodiversity and ecological quality. However, the integration o...
This publication is an output from EU COST Action DNAqua-Net (CA 15219 - Developing new genetic tools for bioassessment of aquatic ecosystems in Europe) and would not have been possible without the opportunities for international collaboration provided by the network, supported by COST (European Cooperation in Science and Technology). Therefore, ou...
Global deterioration of marine ecosystems, together with increasing pressure to use them, has created a demand for new, more efficient and cost-efficient monitoring tools that enable assessing changes in the status of marine ecosystems. However, demonstrating the cost-efficiency of a monitoring method is not straightforward as there are no generall...
In this talk I explore how to advance molecular methods from tools in the research domain to routine use in national biomonitoring. I outline the necessity of common guidance, networks, international pilot studies and cooperation with officials to achieve the goal of method uptake into routine use. Lastly, I will explain the role that international...
Environmental DNA (eDNA) and other molecular based approaches are revolutionizing the field of biomonitoring. These approaches undergo rapid modifications, and it is crucial to develop the best practices by sharing the newest information and knowledge. In our ongoing project we:
assess the state-of-the-art of eDNA methods at Finnish Environment Ins...
Bulk macroinvertebrate DNA metabarcoding is proven a useful tool for routine assessment of freshwater ecosystems. Following a small scale study in 2017, using 18 samples from Finland Elbrecht et al. 2017, sampling and metabarcoding efforts were extended to a total of 297 official monitoring samples from Denmark, Sweden, Norway, Iceland, and Finland...
Most animal species on Earth are insects, and recent reports suggest that their abundance is in drastic decline. Although these reports come from a wide range of insect taxa and regions, the evidence to assess the extent of the phenomenon is sparse. Insect populations are challenging to study, and most monitoring methods are labor intensive and ine...
A multitude of anthropogenic pressures deteriorate the Baltic Sea, resulting in the need to protect and restore its marine ecosystem. For an efficient conservation, comprehensive monitoring and assessment of all ecosystem elements is of fundamental importance. The Baltic Marine Environment Protection Commission HELCOM coordinates conservation measu...
Legislations and commitments regulate Baltic Sea status assessments and monitoring. These assessments suffer from monitoring gaps that need prioritization. We used three sources of information; scientific articles, project reports and a stakeholder survey to identify gaps in relation to requirements set by the HELCOM's Baltic Sea Action Plan, the M...
Understanding how biological communities respond to environmental changes is a key challenge in ecology and ecosystem management. The apparent decline of insect populations necessitates more biomonitoring but the time‐consuming sorting and expert‐based identification of taxa pose strong limitations on how many insect samples can be processed. In tu...
Most animal species on Earth are insects, and recent reports suggest that their abundance is in drastic decline. Although these reports come from a wide range of insect taxa and regions, the evidence to assess the extent of the phenomenon is still sparse. Insect populations are challenging to study and most monitoring methods are labour intensive a...
The step of expert taxa recognition currently slows down the response time of many bioassessments. Shifting to quicker and cheaper state-of-the-art machine learning approaches is still met with expert scepticism towards the ability and logic of machines. In our study, we investigate both the differences in accuracy and in the identification logic o...
Uncertainty in the information obtained through monitoring complicates decision making about aquatic ecosystems management actions. We suggest the value of information (VOI) to assess the profitability of paying for additional monitoring information, when taking into account the costs and benefits of monitoring and management actions, as well as as...
In the boreal zone, surface waters mostly receive external organic matter (OM) from surrounding peatlands. The lake’s biological communities may respond to changes in OM
inputs caused by anthropogenic activities in the catchment. Testate amoebae (TA) possess an outer shell that preserves well in lake sediments and are commonly used in paleo-enviro...
Understanding how biological communities respond to environmental changes is a key challenge in ecology and ecosystem management. The apparent decline of insect populations necessitates more biomonitoring but the time-consuming sorting and identification of taxa pose strong limitations on how many insect samples can be processed. In turn, this affe...
The assessment of diversity and similarity is relevant in monitoring the status of ecosystems. The respective indicators are based on the taxonomic composition of biological communities of interest, currently estimated through the proportions computed from sampling multivariate counts. In this work we present a novel method to estimate the taxonomi...
Over the last decade, steady advancements have been made in the use of DNA-based methods for detection of species in a wide range of ecosystems. This progress has culminated in molecular monitoring methods being employed for the detection of several species for enforceable management purposes of endangered, invasive, and illegally harvested species...
Inadequate Monitoring and Evaluation (M&E) is often thought to hinder adaptive management of socio-ecological systems. A key influence on environmental management practices are environmental policies: however, their consequences for M&E practices have not been well-examined.
We examine three policy areas - the Water Framework Directive, the Natura...
The data presented in this DiB article provide an overview of Monitoring and Evaluation (M&E) carried out for 3 European environmental policies (the Water Framework Directive, the Natura 2000 network of protected areas, and Agri-Environment Schemes implemented under the Common Agricultural Policy), as implemented in 9 cases (Catalonia (Spain), Esto...
River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to...
River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing
assay to...
River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to...
River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to...
Abstract
The Water Framework Directive (WFD) is a pioneering piece of legislation that aims to protect and enhance aquatic ecosystems and promote sustainable water use across Europe. There is growing concern that the objective of good status, or higher, in all EU waters by 2027 is a long way from being achieved in many countries. Through questionn...
final recommendations
The assessment of diversity and similarity is relevant in monitoring the status of ecosystems. The respective indicators are based on the taxonomic composition of biological communities of interest, currently estimated through the proportions computed from sampling multivariate counts. In this work we present a novel method able to work with only o...
Species richness and spatial variation in community composition (i.e., beta diversity) are key measures of biodiversity. They are largely determined by natural factors, but also increasingly affected by anthropogenic factors. Thus, there is a need for a clear understanding of the human impact on species richness and beta diversity, the underlying m...
As most ecosystems, peatlands have been heavily exploited for different human purposes. For example, in Finland the majority is under forestry, agriculture or peat mining use. Peatlands play an important role in carbon storage, water cycle, and are a unique habitat for rare organisms. Such properties highlight their environmental importance and the...
Managing the water quality of freshwaters is a crucial task worldwide. One of the most used methods to biomonitor water quality is to sample benthic macroinvertebrate communities, in particular to examine the presence and proportion of certain species. This paper presents a benchmark database for automatic visual classification methods to evaluate...
Several national and international environmental laws require countries to meet clearly defined targets with respect to the ecological status of aquatic ecosystems. In Europe, the EU-Water Framework Directive (WFD; 2000/60/EC) represents such a detailed piece of legislation. The WFD that requires the European member countries to achieve an at least...
Assessment of ecological status for the European Water Framework Directive (WFD) is based on "Biological Quality Elements" (BQEs), namely phytoplankton, benthic flora, benthic invertebrates and fish. Morphological identification of these organisms is a time-consuming and expensive procedure. Here, we assess the options for complementing and, perhap...
Aquatic biomonitoring has become an essential task in Europe and many other regions as a consequence of strong anthropogenic pressures affecting the health of lakes, rivers, oceans and groundwater. A typical assessment of the environmental quality status, such as it is required by European but also North American and other legislation, relies on ma...
Aquatic biomonitoring has become an essential task in Europe and many other regions as a consequence of strong anthropogenic pressures affecting the health of lakes, rivers, oceans and groundwater. A typical assessment of the environmental quality status, such as it is required by European but also North American and other legislation, relies on ma...
The step of expert taxa recognition currently slows down the response time of many bioassessments. Shifting to quicker and cheaper state-of-the-art machine learning approaches is still met with expert scepticism towards the ability and logic of machines. In our study, we investigate both the differences in accuracy and in the identification logic o...
1. DNA metabarcoding holds great promise for the assessment of macroinvertebrates in stream ecosystems. However, few large-scale studies have compared the performance of DNA metabarcoding with that of routine morphological identification.
2. We performed metabarcoding using four primer sets on macroinvertebrate samples from 18 stream sites across F...
Essential Biodiversity Variables (EBVs) have been suggested to harmonize biodiversity monitoring worldwide. Their aim is to provide a small but comprehensive set of monitoring variables that would give a balanced picture of the development of biodiversity and the reaching of international and national biodiversity targets. Globally, GEO BON (Group...
1) DNA metabarcoding holds great promise for the assessment of macroinvertebrates in stream ecosystems. However, few large-scale studies have compared the performance of DNA metabarcoding with that of routine morphological identification.
2) We performed metabarcoding using four primer sets on macroinvertebrate samples from 18 stream sites across F...
1) DNA metabarcoding holds great promise for the assessment of macroinvertebrates in stream ecosystems. However, few large-scale studies have compared the performance of DNA metabarcoding with that of routine morphological identification.
2) We performed metabarcoding using four primer sets on macroinvertebrate samples from 18 stream sites across F...
1) DNA metabarcoding holds great promise for the assessment of macroinvertebrates in stream ecosystems. However, few large-scale studies have compared the performance of DNA metabarcoding with that of routine morphological identification.
2) We performed metabarcoding using four primer sets on macroinvertebrate samples from 18 stream sites across F...
The Finnish Environment Institute (SYKE) conducted a benthic macroinvertebrate taxa identification proficiency test in which 22 participants took part. In the lake littoral subtest, one participant out of seven scored lower than 95% correct and three out of seven achieved perfect results in this test. Half of the ten participants in the lake profun...
1) DNA metabarcoding holds great promise for assessment of stream ecosystems with macroinvertebrates. However, few large-scale studies have compared the performance of DNA metabarcoding with that of routine morphological identification.
2) We tested metabarcoding using 18 macroinvertebrate samples from Finland using four primer sets. The samples we...
In benthic macroinvertebrate biomonitoring systems, the target is to determine the status of ecosystems based on several biological indices. To increase cost-efficiency, computer-based taxa identification for image data has recently been developed. Taxa identification errors can, however, have strong effects on the indices and thus on the determina...
The types and numbers of benthic macroinvertebrates found in a water body reflect water quality. Therefore, macroinvertebrates are routinely monitored as a part of freshwater ecological quality assessment. The collected macroinvertebrate samples are identified by human experts, which is costly and time-consuming. Thus, developing automated identifi...
The protection, preservation and restoration of aquatic ecosystems and their functions are of global importance. For European states it became legally binding mainly through the EU-Water Framework Directive (WFD). In order to assess the ecological status of a given water body, aquatic biodiversity data are obtained and compared to a reference water...
The percent model affinity (PMA) index is used to measure the similarity of two probability profiles representing, for example, an ideal profile (i.e. reference condition) and a monitored profile (i.e. possibly impacted condition). The goal of this work is to study the effects of sample size, evenness, true value of the index and number of classes...
The environmental importance of peatlands has stimulated efforts to restore their specific ecosystem structure and functions. Monitoring and assessment of the ecological state of the peatland is fundamental in restoration programmes. Most studies have focused on the responses of vegetation and, to a lesser extent, on testate amoebae (TA). To our kn...
Quantification of suspended sediment yield from rivers is essential to determining how land cover and land use affect water quality in fluvial ecosystems and erosion rates in catchment basins. In this study we used long-term (1967–2011) river-runoff and sedimentconcentration data to seek new insights into suspended sediment transport and its govern...
Macroinvertebrates form an important functional component of aquatic ecosystems. Their ability to indicate various types of anthropogenic stressors is widely recognized which has made them an integral component of freshwater biomonitoring. The use of macroinvertebrates in biomonitoring is dependent on manual taxa identification which currently is a...
Macroinvertebrate samples are commonly used in biomonitoring to study changes on aquatic ecosystems. Traditionally, specimens are identified manually to taxa by human experts being time-consuming and cost intensive. Using the image data of 35 taxa and 64 features, we propose a novel variant of the quadratic discriminant analysis for breaking the cu...
Reliable estimates of the nutrient fluxes carried by rivers from land-based sources to the sea are needed for efficient abatement of marine eutrophication. Although nutrient concentrations in rivers generally display large temporal variation, sampling and analysis for nutrients, unlike flow measurements, are rarely performed on a daily basis. The i...
Reliable estimates of the nutrient fluxes carried by rivers from land-based sources to the sea are needed for efficient abatement of marine eutrophication. The infrequent data calls for ways to reliably estimate the nutrient concentrations of the missing days. Here we use the Gaussian state space models with daily water flow as a predictor variable...
Quantifying of suspended sediment fluxes from rivers is essential to
understand land-fluvial systems linkages. Further, current knowledge for
transport of very fine suspended sediment, its dynamics and affecting
biogeochemical factors is only theoretical in boreal riverine systems
with little published long term data. We address this gap through a...
Stable isotope analysis (SIA) can provide insights into carbon flow
dynamics and trophic positions of consumers in food webs. SIA is used in
this study, where we assess the possible changes in the basal resources
of Finnish boreal stream ecosystems and differences in the impact of two
forms of peatland use, forestry and peat mining. About 30% of th...
Aims Despite wide consensus that ecological patterns and processes should be studied at multiple spatial scales, the temporal component of diversity variation has remained poorly examined. Specifically, rare species may exhibit patterns of diversity variation profoundly different from those of dominant taxa.
Location Southern Finland.
Methods We us...