Kim Aarestrup

Technical University of Denmark | DTU · National Institute of Aquatic Resources

Knowledge about sex‐specific difference in life‐history traits—like growth, mortality, or behavior—is of key importance for management and conservation as these parameters are essential for predictive modeling of population sustainability. We applied a newly developed molecular sex identification method, in combination with a SNP (single nucleotide...

Genetic data have greatly increased means to understand fish marine migration behaviours at large spatial scale within a quantitative framework. The anadromous sea trout is a prized target of recreational fishery and an important ecosystem component in freshwater and marine coastal habitats in large parts of temperate northern Europe. Nonetheless,...

Electronic tags are often used to track the freshwater‐marine migrations of smolts, where smolts are captured for tagging pre‐migration (e.g., via electrofishing) or during‐migration (e.g., via traps). Pre‐migration capture allows smolts to initiate and complete their downstream migration unhindered, but risks smolt loss before the migration commen...

Many organisms rely on migrations between habitats to maximize lifetime fitness, but these migrations can be risky due to a suite of factors. In anadromous salmonids, the smolt migration from fresh water to sea is a critical life stage, during which smolts can experience high mortality from multiple sources. This study investigated the migratory be...

Acoustic telemetry (AT) has emerged as a valuable tool for monitoring aquatic animals in both European inland and marine waters over the past two decades. The European Tracking Network (ETN) initiative has played a pivotal role in promoting collaboration among AT researchers in Europe and has led to a significant increase in the number of tagged an...

The use of Pop‐up Satellite Archival Tags (PSATs) has provided considerable new information about the behaviour of migrating (silver) eels ( Anguilla spp.) at sea, with 9 of 19 recognised species or subspecies tagged to date. However, such studies often reported premature tag detachment and relatively high rates of predation. Since 2000, several PS...

Winter is an energetically challenging period for many animals in temperate regions because of the relatively harsh environmental conditions and reduction in food availability during this season. Moreover, stressors experienced by individuals in the fall can affect their subsequent foraging strategy and energy stores after exposure has ended, refer...

Delineating oceanic migration routes of adult anguillid eels is essential for characterising threats to this crucial stage in their reproductive life cycle. We tagged 20 female migrant (silver) New Zealand longfin eels Anguilla dieffenbachii with pop-up satellite archival tags, releasing 10 on the west coast of the North Island and 10 on the east c...

Salmonids are well known for their natal homing behaviour, meaning they return to breed in the same area where they originated. However, not all individuals return to their natal breeding grounds—a behavioural trait known as straying. The prevalence of straying is difficult to explore and therefore quantitative estimates for straying are seldom rep...

European rivers are disconnected by more than one million man-made barriers that physically limit aquatic species migration and contribute to modification of freshwater habitats. Here, a Conceptual Habitat Alteration Model for Ponding is developed to aid in evaluating the effects of impoundments on fish habitats. Fish communities present in rivers...

Geolocating aquatic animals with acoustic tags has been ongoing for decades, relying on the detection of acoustic signals at multiple receivers with known positions to calculate a 2D or 3D position, and ultimately recreate the path of an aquatic animal from detections at fixed stations. This method of underwater geolocation is evolving with new sof...

Anadromous brown trout display a continuum of life-history strategies with high intraspecific variability across their distribution range. While many of these strategies have been widely studied, some have received considerably less attention. In this study, we investigated intraspecific differences in two overlooked life-history strategies—outmigr...

Freshwater habitats are experiencing two to three times the rate of biodiversity loss of terrestrial and marine habitats. As status quo actions within the conservation community are not reversing the downward trajectory for freshwater biodiversity, we propose four actions to shift the narrative such that freshwater biodiversity is no longer invisib...

The increase in abundance of great cormorants (Phalacrocorax carbo sinensis) over the last decades has caused concern for the sustainability of fish populations. Cormorants are opportunistic piscivorous birds that eat fish from a wide range of species and sizes, in marine, lacustrine and riverine habitats. It has been documented that juvenile salmo...

Natal homing, a strategy in which individuals return to breed in the same river as they were born, is prevalent among salmonids. However, some individuals may not return to their natal river, and instead stray to non-natal rivers. To date, there is limited documentation on patterns of straying among iteroparous salmonids that have returned to spawn...

The European eel (Anguilla anguilla) is critically endangered (according to the most recent IUCN assessment) and has suffered a 95% decline in recruitment since the 1980s, attributed in part to factors occurring during the marine phases of its life-cycle. As an adult, the European eel undertakes the longest spawning migration of all anguillid eels,...

European eel is thought to be a symbol of the effects of global change on aquatic biodiversity. The species has persisted for millions of years and faced drastic environmental fluctuations thanks to its phenotypic plasticity. However, the species has recently declined to historically low levels under synergistic human pressures. Sublethal chemical...

Reproduction represents the most energetically demanding period of life for many organisms. Capital breeders, such as anadromous sea trout (Salmo trutta), provide a particularly interesting group of organisms to study within the context of reproduction because they rely on energy stores accrued before breeding to reproduce and sustain all phenotypi...

The recent return of Atlantic bluefin tuna to northern Europe following the recovery of the east Atlantic stock has sparked substantial public and scientific interest. This is particularly true for recreational anglers in Denmark, who often consider Atlantic bluefin tuna to be the catch of a lifetime. This attitude has previously sustained a substa...

The ocean is a key component of the Earth's dynamics, providing a great variety of ecosystem services to humans. Yet, human activities are globally changing its structure and major components, including marine biodiversity. In this context, the United Nations has proclaimed a Decade of Ocean Science for Sustainable Development to tackle the scienti...

Atlantic bluefin tuna (Thunnus thynnus; ABFT) is one of the most iconic fish species in the world. Recently, after being very rare for more than half a century, large bluefin tunas have returned to Nordic waters in late summer and autumn, marking the return of the largest predatory fish in Nordic waters. By tagging 18 bluefin tunas with electronic...

Natal homing is a prevalent life-history strategy among salmonids. However, not all individuals return to their natal river, a behaviour known as straying. In this study, we investigated the prevalence of straying and its connection to different life-history characteristics in an anadromous brown trout (Salmo trutta) population. In total, 21 538 ju...

Background Externally attached archival data logging tags are increasingly used to unravel migration routes of fish species at sea. Due to the relatively large size of the tags, their application on seaward migrating anguillid eels often forms a challenge in terms of feasibility and impact on the eel’s swimming performance. In this study, we invest...

Estuaries are complex environments, which provide important nursery areas for several fish species, but anthropogenic activities as well as low salinities may affect fish reproductive potential. This study investigated spawning migrations of turbot (Scophthalmus maximus) and European flounder (Platichthys flesus) in the estuary Roskilde Fjord using...

We estimate over 200,000 km or 10% of previously free-flowing river habitat length has been lost due to impoundments, an amount equivalent to the entire length of rivers in Italy. This loss strongly depends on the biogeographical location and a type of impounding barrier. European rivers are disconnected by more than one million man-made barriers t...

Anguillid eel populations have declined dramatically over the last 50 years in many regions of the world, and numerous species are now under threat. A critical life-history phase is migration from freshwater to distant oceans, culminating in a single life-time spawning event. For many anguillids, especially those in the southern hemisphere, mystery...

Barrier removal is increasingly being seen as the optimal solution to restore lotic habitat and fish communities, however, evidence of its efficacy is often limited to single sites or catchments. This study used a before–after methodology to examine the short-term (average, 541 days) effects of low-head (0.1–2.9 m) barrier removal at 22 sites distr...

Nineteen female silver European eels (Anguilla anguilla L.) were tagged with satellite tags and released in the Gulf of Lion in the Mediterranean during the migration seasons 2013 and 2015. Sixteen tags transmitted data: five in the Atlantic Ocean, and eleven in the Mediterranean. Of those, 50% of migrating eels were consumed by marine mammals in e...

Repeatable individual variation in behaviour has been demonstrated in all taxa, though few studies have explored the broader ecological consequences of such consistent behaviour. We tagged and tracked 401 individual sea trout Salmo trutta with passive integrated transponder telemetry over two to four spawning seasons as they migrated between freshw...

Acoustic telemetry (AT) is a rapidly evolving technique used to track the movements of aquatic animals. As the capacity of AT research expands it is important to optimize its relevance to management while still pursuing key ecological questions. A global review of AT literature revealed region-specific research priorities underscoring the breadth o...

Acoustic telemetry is widely used to investigate aquatic animal movement. Pulse position modulation (PPM) is an acoustic telemetry method that allows multiple unique identification codes to be transmitted at a single acoustic frequency, typically in the 69 kHz range. However, because the potential number of unique identification codes (i.e. tags) i...

Coexistence of ecotypes, genetically divergent population units, is a widespread phenomenon, potentially affecting ecosystem functioning and local food web stability. In coastal Skagerrak, Atlantic cod (Gadus morhua) occur as two such coexisting ecotypes. We applied a combination of acoustic telemetry, genotyping, and stable isotope analysis to 72...

Early-life experiences can shape life histories and population dynamics of wild animals. To examine whether stressful stimuli experienced in early life resulted in carryover effects in later life stages, we conducted several experimental manipulations and then monitored wild fish with passive integrated transponder tags during juvenile out-migratio...

Anguillid eel populations have declined dramatically over the last 50 years in many regions of the world, and numerous species are now under threat. A critical life-history phase is migration from freshwater to distant oceans, culminating in a single life-time spawning event. For many anguillids, especially those in the southern hemisphere, mystery...

Determining the mechanisms driving range-wide reductions in Atlantic salmon marine survival is hindered by an insufficient understanding of their oceanic ecology and distribution. We attached 204 pop-up satellite archival tags to post-spawned salmon when they migrated to the ocean from seven European areas and maiden North American salmon captured...

Anguillid eels are found globally in fresh, transitional and saline waters and have played an important role in human life for centuries. The population status of several species is now of significant concern. The threats to populations include direct exploitation at different life stages, blockages to migratory routes by dams and other structures,...

Salmonids are some of the most widely studied species of fish worldwide. They span freshwater rivers and lakes to fjords and oceans; they include short‐ and long‐distance anadromous migrants, as well as partially migratory and non‐migratory populations; and exhibit both semelparous and iteroparous reproduction. Salmonid life‐history strategies repr...

The sea trout (anadromous brown trout Salmo trutta ) displays extensive among-individual variation in marine migration behaviour. We studied the migration behaviour of 286 sea trout (27-89 cm) tagged with acoustic transmitters in the spring, in 7 populations located in 2 distinct marine fjord systems in Norway. We examined whether individual nutrit...

Partial migration is common in a variety of taxa and has important ecological and evolutionary implications, yet the underlying factors that lead to different migratory strategies are not clearly understood. Given the importance of temperature in serving as a cue for migration, along with its role in regulating metabolism, growth, reproduction, and...

Atlantic bluefin tuna (ABFT) have recently returned to waters in the Skagerrak-Kattegat area between Denmark and Sweden and the western English Channel, where they have been rare for over five decades. To understand the factors that affect their distribution, ecology, population structure and survival, we conducted a tagging study to track their mi...

Alternative migratory tactics, like partial migration, are common in many taxa. The proximate and ultimate drivers underpinning these strategies are unclear, though factors like condition and energetic status have been posited as important predictors. We sampled and PIT-tagged 1882 wild brown trout (Salmo trutta) prior to the first so-called decisi...

Knowledge of migration behaviour and spatio-temporal habitat use is important for management and conservation, not least for diadromous species where population dynamics are affected by processes occurring in both freshwater and marine habitats. Sampling from a commercial capture fishery for the ecologically and economically important salmonid Salm...

Rivers support some of Earth’s richest biodiversity1 and provide essential ecosystem services to society2, but they are often fragmented by barriers to free flow3. In Europe, attempts to quantify river connectivity have been hampered by the absence of a harmonized barrier database. Here we show that there are at least 1.2 million instream barriers...

Acoustic telemetry enables spatial ecologists to collect movement data from a variety of aquatic species. In estuaries and rivers, accounting for the complex shape of water bodies is challenging. Current methods for analysing utilization distributions (UDs) are restricted to using the locations of receivers where animals have been detected, which l...

The Atlantic salmon (Salmo salar ) population of the River Minho represents the southern natural distribution edge of the species. In line with the general trend for Atlantic salmon, this population has been declining over the years and is now at a critically low level. With river connectivity compromised by a large dam just 80 km upstream the Rive...

The European eel is critically endangered. Although the quality of silver eels is essential for their reproduction, little is known about the effects of multiple contaminants on the spawning migration and the European eel management plan does not take this into account. To address this knowledge gap, we sampled 482 silver eels from 12 catchments ac...

Let It Flow | Magazine produced for the EU Horizon 2020 AMBER project. The origin of this magazine stems from a project involving scientists, representatives from the hydropower industry, government agencies, and non-governmental organizations who gathered to make an impact on Europe’s water management. This EU Horizon 2020 funded project, called...

Since in 1980s, the number of great cormorants (Phalacrocorax carbo sinensis) has increased all over its European distribution area. This has led to conflicts between bird conservation and fisheries. Mariager fjord in Denmark is an important feeding and transition area for a large population of migrating seatrout (Salmo trutta), but it also provide...

The past several decades have ushered in a golden age in the study of migration biology, leading to a wealth of descriptive articles that characterize various aspects of migration and its implications for individuals, populations, and ecosystems. However, relatively few studies have adopted an experimental approach to the study of migration, and fe...

The salmonid lifecycle has been studied for over a 100 years. Our literature search indicated that the Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) are among the most studied of fish species. By reviewing both their anadromous and non-anadromous lifecycles, we show that there is a growing body of evidence of considerable variation i...

Background: Understanding fish movements and migrations are paramount for management and conservation efforts. By applying Hidden Markov Models (HMMs) on records from electronic tags, migration routes of tagged fish can be reconstructed and new insights to the movement ecology of a species can be gained. We demonstrate the usability of HMMs on a wi...

The River Bush (Northern Ireland) is an index river for the estimation of Atlantic salmon, Salmo salar L., stock size, population dynamics and marine survival rates. Marine survival estimates are based on the number of smolts counted at a trap 3.5 km upstream of the river outlet. The survival from release to coastal inshore waters for acoustic‐tagg...

Understanding migratory behavior, mortality, and physiology is essential for conservation of many species, particularly anadromous fish. In this study, freshwater and marine migrations of the endangered salmonid North Sea houting (Coregonus oxyrinchus (Linnaeus, 1758)) were investigated using telemetry. Furthermore, physiological samples were colle...

Spring migrating sea trout juveniles can be classified as parr, pre-smolt or smolt based on body morphology and osmoregulatory capacity. In this respect, parr are assumed to be less prepared for a marine life and to have lower survival at sea than pre-smolts and smolts. However, the behaviour and survival of these trout phenotypes upon entering the...

Migration is a widespread but highly diverse component of many animal life histories. Fish migrate throughout the world's oceans, within lakes and rivers, and between the two realms, transporting matter, energy, and other species (e.g., microbes) across boundaries. Migration is therefore a process responsible for myriad ecosystem services. Many hum...

The status of Atlantic salmon, Salmo salar L., over the last decades has been of concern across its entire distribution area. Its anadromous nature exposes the species to human pressures in both freshwater and marine environments, and over long periods, thus exacerbating its decline. Given its value within the food industry, the recreational anglin...

This paper reviews the life history of brown trout and factors influencing decisions to migrate. Decisions that maximize fitness appear dependent on size at age. In partly anadromous populations, individuals that attain maturity at the parr stage typically become freshwater resident. For individual fish, the life history is not genetically fixed an...

Animal telemetry is a powerful tool for observing marine animals and the physical environments that they inhabit, from coastal and continental shelf ecosystems to polar seas and open oceans. Satellite-linked biologgers and networks of acoustic receivers allow animals to be reliably monitored over scales of tens of meters to thousands of kilometers,...

Predation and mortality are often difficult to estimate in the ocean, which hampers the management and conservation of marine fishes. We used data from pop-up satellite archival tags to investigate the ocean predation and mortality of adult Atlantic salmon (Salmo salar) released from 12 rivers flowing into the North Atlantic Ocean. Data from 156 ta...

The behaviour and survival of sea trout Salmo trutta L. in marine environments remains scarcely described despite the widespread ecological and cultural importance of the species. We tracked 160 wild, post-spawned sea trout in 2 Danish river systems using acoustic tags to examine their behaviour in a fjord system characterized by a scarcity of refu...

Denne rapport sammenfatter en undersøgelse af lystfiskeriet langs kysten på Fyn gennemført i foråret 2017. Undersøgelsen blev finansieret af den Europæiske Hav- og Fiskerifond og Fiskeristyrelsen via projektet ”For-bedring af forvaltningsgrundlaget for bestande i det rekreative fiskeri” samt af Fisketegnsmidlerne (Projekt ”Lystfiskeradfærd og socio...

Juvenile salmonids experience high mortality when negotiating lentic waters during their downstream migration to the sea. The development of artificial lakes and wetlands in streams has become a widely used management tool to reduce nutrient load to coastal areas. Such wetlands may threaten anadromous populations. In this study we quantify net grou...

Kelts – individuals of anadromous fish species which have successfully spawned and may return to sea to repeat the cycle – are perhaps the least studied life stage of iteroparous fish species. To date, our understanding of what makes them successful in their return migration to sea is limited. We investigated the relationship between three physiolo...

The survival rates of three groups of seaward‐migrating Salmo salar smolts were investigated in 2005, 2016, and 2017 in the River Skjern and River Omme, as well as in the Ringkøbing Fjord using acoustic telemetry. Ringkøbing Fjord extends for approximately 300 km², and has a narrow, regulated outlet to the sea. Smolts of three different origins: (a...

Pike (Esox lucius) occupy coastal streams and rivers of the Baltic Sea, where they attain large sizes (>5 kg). These large sizes are perhaps due to the fact that they can tolerate relatively high salinities and can thus forage in the nearby more productive brackish environments. In an attempt to quantify the extent to which pike utilise brackish en...