Kamal Dingle

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Verified

Kamal verified their affiliation via an institutional email.

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• DPhil Oxford University
• Professor (Associate) at Gulf University for Science & Technology

Making accurate inferences about data is a key task in science and mathematics. Here we study the problem of retrodiction, inferring past values of a series, in the context of chaotic dynamical systems. Specifically, we are interested in inferring the starting value x0 in the series x0, x1, x2,. .. , xn given the value of xn, and the associated fun...

By linking genetic sequences to phenotypic traits, genotype-phenotype maps represent a key layer in biological organisation. Their structure modulates the effects of genetic mutations, shaping evolutionary outcomes. Recent work based on algorithmic information theory introduced an upper bound on the likelihood of a random genetic mutation causing a...

Arguments inspired by algorithmic information theory predict an inverse relation between the probability and complexity of output patterns in a wide range of input–output maps. This phenomenon is known as simplicity bias. By viewing the parameters of dynamical systems as inputs, and the resulting (digitised) trajectories as outputs, we study simpli...

Simplicity bias is an intriguing phenomenon prevalent in various input-output maps, characterized by a preference for simpler, more regular, or symmetric outputs. Notably, these maps typically feature high-probability outputs with simple patterns, whereas complex patterns are exponentially less probable. This bias has been extensively examined and...

There are many shapes, forms, and patterns which could conceivably exist in biology. What are the factors that affect which ones will be selected, and determine evolutionary outcomes? We study this question by examining the bias towards certain shapes of RNA molecules that exist in nature.

Arguments inspired by algorithmic information theory predict an inverse relation between the probability and complexity of output patterns in a wide range of input-output maps. This phenomenon is known as simplicity bias. By viewing the parameters of dynamical systems as inputs, and resulting (digitised) trajectories as outputs, we study simplicity...

Phenotype robustness, defined as the average mutational robustness of all the genotypes that map to a given phenotype, plays a key role in facilitating neutral exploration of novel phenotypic variation by an evolving population. By applying results from coding theory, we prove that the maximum phenotype robustness occurs when genotypes are organize...

Developing new ways to estimate probabilities can be valuable for science, statistics, engineering, and other fields. By considering the information content of different output patterns, recent work invoking algorithmic information theory inspired arguments has shown that a priori probability predictions based on pattern complexities can be made in...

Phenotype robustness, defined as the average mutational robustness of all the genotypes that map to a given phenotype, plays a key role in facilitating neutral exploration of novel phenotypic variation by an evolving population. By applying results from coding theory, we prove that the maximum phenotype robustness occurs when genotypes are organise...

An important question in evolutionary biology is whether (and in what ways) genotype–phenotype (GP) map biases can influence evolutionary trajectories. Untangling the relative roles of natural selection and biases (and other factors) in shaping phenotypes can be difficult. Because the RNA secondary structure (SS) can be analyzed in detail mathemati...

Purpose: Cytokines play important roles in pregnancy complications. Some hormones such as estrogen, progesterone, and dydrogesterone have been shown to alter cytokine profiles. Understanding how cytokine profiles are affected by these hormones is therefore an important step towards immunomodulatory therapies for pregnancy complications. We analyse...

Unravelling the structure of genotype–phenotype (GP) maps is an important problem in biology. Recently, arguments inspired by algorithmic information theory (AIT) and Kolmogorov complexity have been invoked to uncover simplicity bias in GP maps, an exponentially decaying upper bound in phenotype probability with the increasing phenotype description...

Methods of pattern recognition and machine learning are applied extensively in science, technology, and society. Hence, any advances in related theory may translate into large-scale impact. Here we explore how algorithmic information theory, especially algorithmic probability, may aid in a machine learning task. We study a multiclass supervised cla...

To what extent can we forecast a time series without fitting to historical data? Can universal patterns of probability help in this task? Deep relations between pattern Kolmogorov complexity and pattern probability have recently been used to make a priori probability predictions in a variety of systems in physics, biology and engineering. Here we s...

Unravelling the structure of genotype-phenotype (GP) maps is an important problem in biology. Recently, arguments inspired by algorithmic information theory (AIT) and Kolmogorov complexity have been invoked to uncover simplicity bias in GP maps, an exponentially decaying upper bound in phenotype probability with increasing phenotype descriptional c...

An important question in evolutionary biology is whether and in what ways genotype-phenotype (GP) map biases can influence evolutionary trajectories. Untangling the relative roles of natural selection and biases (and other factors) in shaping phenotypes can be difficult. Because RNA secondary structure (SS) can be analysed in detail mathematically...

Evolution by natural selection is often viewed as an optimisation process where an organism's phenotypic traits are adapted gradually to improve its fitness. Because of the many different traits with potentially conflicting requirements, among other factors, this optimisation process may appear onerous. Building on recent mathematical work connecti...

Why are simple, regular, and symmetric shapes common in nature? Many natural shapes arise as solutions to energy minimisation or other optimisation problems, but is there a general relation between optima and simple, regular shapes and geometries? Here we argue from algorithmic information theory that for objective functions common in nature-based...

Developing new ways to estimate probabilities can be valuable for science, statistics, and engineering. By considering the information content of different output patterns, recent work invoking algorithmic information theory has shown that a priori probability predictions based on pattern complexities can be made in a broad class of input-output ma...

A layman's introduction to Algorithmic Probability

Significance Why does evolution favor symmetric structures when they only represent a minute subset of all possible forms? Just as monkeys randomly typing into a computer language will preferentially produce outputs that can be generated by shorter algorithms, so the coding theorem from algorithmic information theory predicts that random mutations,...

To what extent can we forecast a time series without fitting to historical data? Can universal patterns of probability help in this task? Deep relations between pattern Kolmogorov complexity and pattern probability have recently been used to make a priori probability predictions in a variety of systems in physics, biology and engineering. Here we s...

Background To mitigate the spread of the COVID-19 coronavirus, some countries have adopted more stringent non-pharmaceutical interventions in contrast to those widely used. In addition to standard practices such as enforcing curfews, social distancing, and closure of non-essential service industries, other non-conventional policies also have been i...

Morphospaces –representations of phenotypic characteristics– are often populated unevenly, leaving large parts unoccupied. Such patterns are typically ascribed to contingency, or else to natural selection disfavouring certain parts of the morphospace. The extent to which developmental bias, the tendency of certain phenotypes to preferentially appea...

Engineers routinely design systems to be modular and symmetric in order to increase robustness to perturbations and to facilitate alterations at a later date. Biological structures also frequently exhibit modularity and symmetry, but the origin of such trends is much less well understood. It can be tempting to assume -- by analogy to engineering de...

The relative prominence of developmental bias versus natural selection is a long standing controversy in evolutionary biology. Here we demonstrate quantitatively that developmental bias is the primary explanation for the occupation of the morphospace of RNA secondary structure (SS) shapes. By using the RNAshapes method to define coarse-grained SS c...

Purpose Cytokine data sets are increasing both in the number of different cytokines measured and the number of samples assayed. Further, typically data from different groups may be contrasted, eg, normal vs complication subjects. Many univariate and multivariate statistical techniques exist to study such cytokine datasets, but the ability to implem...

Background: To mitigate the spread of the COVID-19 coronavirus, some countries have adopted more stringent non-pharmaceutical interventions in contrast to those widely used (for e.g. the state of Kuwait). In addition to standard practices such as enforcing curfews, social distancing, and closure of non-essential service industries, other non-conven...

Background: To mitigate the spread of the COVID-19 coronavirus, some countries have adopted more stringent non-pharmaceutical interventions in contrast to those widely used (for e.g. the state of Kuwait). In addition to standard practices such as enforcing curfews, social distancing, and closure of non-essential service industries, other non-conven...

Background: To mitigate the spread of the COVID-19 coronavirus, some countries have adopted more stringent non-pharmaceutical interventions in contrast to those widely used (for e.g. the state of Kuwait). In addition to standard practices such as enforcing curfews, social distancing, and closure of non-essential service industries, other non-conven...

To mitigate the spread of the COVID-19 coronavirus, some countries have enforced more stringent non-pharmaceutical interventions in contrast to those widely adopted (for e.g. the state of Kuwait). In addition to standard practices such as enforcing curfews, social distancing, and closure of non-essential service industries, other non-conventional p...

For a broad class of input-output maps, arguments based on the coding theorem from algorithmic information theory (AIT) predict that simple (low Kolmogorov complexity) outputs are exponentially more likely to occur upon uniform random sampling of inputs than complex outputs are. Here, we derive probability bounds that are based on the complexities...

For a broad class of input-output maps, arguments based on the coding theorem from algorithmic information theory (AIT) predict that simple (low Kolmogorov complexity) outputs are exponentially more likely to occur upon uniform random sampling of inputs than complex outputs are. Here, we derive probability bounds that are based on the complexities...

Osteoporosis is a serious worldwide public health concern. The role of the immune system in the onset of osteoporosis in postmenopausal women is an area of current research. Here we study data from a panel of 10 cytokines obtained from postmenopausal women, with both normal and low bone mineral density (BMD). Normal- and low-BMD groups are compared...

Establishing a cytokine signature associated to some medical condition is an important task in immunology. Increasingly, large numbers of cytokines are used for signatures, via lists of reference ranges for each individual cytokine or ratios of cytokines. Here we argue that this common approach has weaknesses, especially when many different cytokin...

Many systems in nature can be described using discrete input-output maps. Without knowing details about a map, there may seem to be no a priori reason to expect that a randomly chosen input would be more likely to generate one output over another. Here, by extending fundamental results from algorithmic information theory, we show instead that for m...

Problem: The immunoregulation to tolerate the semiallogeneic fetus during pregnancy includes a harmonious dynamic balance between anti- and pro-inflammatory cytokines. Several earlier studies reported significantly different levels and/or ratios of several cytokines in complicated pregnancy as compared to normal pregnancy. However, as cytokines op...

An imbalance in pro- and anti-inflammatory cytokines is suggested to contribute to tissue damage in rheumatoid arthritis (RA). This study was aimed at investigating profiles of cytokines in circulation and cytokines produced by mitogen-stimulated peripheral blood mononuclear cells (PBMC) in RA patients and healthy controls, and to explore correlati...

Background Although a large number of studies have investigated possible relationships among serum levels of vitamin D or cytokines with disease progress and prognosis, similar studies on self-reported symptoms are still controversial. The overall objective of this study was to look into the association between serum levels of vitamin D or cytokine...

The prevalence of neutral mutations implies that biological systems typically have many more genotypes than phenotypes. But can the way that genotypes are distributed over phenotypes determine evolutionary outcomes? Answering such questions is difficult because the number of genotypes can be hyper-astronomically large. By solving the genotype-phent...

We show that numerical approximations of Kolmogorov complexity (KK) of graphs and networks capture some group-theoretic and topological properties of empirical networks, ranging from metabolic to social networks, and of small synthetic networks that we have produced. That KK and the size of the group of automorphisms of a graph are correlated opens...

We show computationally that approximations of Kolmogorov complexity (K) applied to graph adjacency matrices capture some group-theoretic and topological properties of graphs and empirical networks ranging from metabolic to social networks. That K and the size of the group of automorphisms of a graph are correlated opens up interesting connections...

We prove Knudsen's law for a gas of particles bouncing freely in a two dimensional pipeline with serrated walls consisting of irrational triangles. Dynamics are randomly perturbed and the corresponding random map studied under a skew-type deterministic representation which is shown to be ergodic and exact. Comment: 21 pages, 5 figures