José Maurício Barbanti Duarte

São Paulo State University | Unesp · Deer Research and Conservation Center - NUPECCE

Stable isotope analysis is a tool used to provide information on species’ ecology, including diet, trophic interactions, and migration patterns. Among biological tissues, fecal samples have the advantage of being relatively easy to collect, supporting studies on rare, elusive, and threatened species. Nonetheless, fecal samples from mammalian herbiv...

Babesia spp. and Theileria spp. are tick-borne apicomplexan protozoa that can cause disease in animals and humans. Deer are considered reservoirs for a wide variety of Piroplasmida species, including some potentially zoonotic. This study aimed to investigate the occurrence and genetic diversity of piroplasmids in wild deer sampled in four Brazilian...

Globally, illegal sport hunting can threaten prey populations when unregulated. Due to its covert nature, illegal sport hunting poses challenges for data collection, hindering efforts to understand the full extent of its impacts. We gathered social media data to analyze patterns of illegal sport hunting and wildlife depletion across Brazil. We coll...

The limited temporal completeness and taxonomic accuracy of species lists, made available in a traditional manner in scientific publications, has always represented a problem. These lists are invariably limited to a few taxonomic groups and do not represent up-to-date knowledge of all species and classification. In this context, the B Brazilian meg...

As part of an epidemiologic study of the Zika virus (ZIKV) in deer (Xxxx), samples from 56 captive deer in south and southeastern Brazil were tested for evidence of ZIKV. Three samples were positive using reverse-transcription quantitative PCR, although no samples were positive by virus isolation.

Understanding species coexistence requires information about how species interact and partition their ecological niche. Niches of closely related species tend to be quite similar and thereby, when syntopic, overlap can result in competition when shared resources are limiting. Brocket deer of tropical forests are ecologically similar species due to...

Bone and dental lesions have been documented in various deer species globally, affecting the efficiency of ingestion and digestion, consequently influencing their general health and leading to a decline in survival and reproductive performance. The present study aimed to characterize bone and dental lesions in the dry skulls of individual deer, est...

Mazama temama, commonly named Central American red brocket deer, was described in Veracruz, east-central México. Cytogenetic studies have characterized differentiated karyotypes observed in captive individuals of the species with a diploid number (2n) = 49 to 50, in a recently collected neotype with a diploid number (2n) = 44 and fundamental number...

There are more than 200 species and subspecies of Neotropical Primates of which more than 40% are listed as threatened by the IUCN Red List of Threatened Species. Both in situ and ex situ conservation programs can benefit from the use of assisted reproductive technologies. The objective of this study was to evaluate, for the first time, cryopreserv...

Chromosomal rearrangements are often associated with playing a role in the speciation process. However, the underlying mechanism that favors the genetic isolation associated with chromosomal changes remains elusive. In this sense, the genus Mazama is recognized by its high level of karyotype diversity among species with similar morphology. A crypti...

Population density is fundamental information for assessing the conservation status of species and support management and conservation actions for in situ populations, but is unknown for many forest species due to their difficulty in detection. The Faecal Standing Crop (FSC) method using detection dogs is an alternative for cryptic or elusive speci...

Understanding how fecal glucocorticoid (GC) concentration is associated with reproduction in wild animals allows us to associate physiological stress with the costs of reproduction. Glucocorticoids are among the main stress‐related hormones, and their secretion is strongly associated with reproductive seasonality. Using non‐invasive methods (thereb...

The Pampas deer (Ozotoceros bezoarticus) is a unique species of neotropical cervid, that inhabits a wide range of open habitats including grasslands, pampas, savannas, and cerrado (Brazil) from -5° to -41° S. The reduction of the area encompassed by these habitats has been dramatically reduced to less than 2 % by human activities such as agricultur...

The Neotropical deer genus Mazama is characterized by homoplastic morphological characters, a high karyotypic diversity, and a polyphyletic condition. The species of the genus have been recovered into two multigeneric lineages, the subtribes Odocoileina and Blastocerina, of the tribe Odocoileini (New World deer) in the family Cervidae. Within the B...

The capybara (Hydrochoerus hydrochaeris) is a large semi-aquatic rodent with a broad distribution across South America. Although it is a relatively common and well-known species, there are few studies on its evolutionary history. Consequently, we decided to investigate the genetic diversity, population structure, and demographic history of capybara...

The genetic diversity of endangered deer species, such as Mazama jucunda, can be preserved with the help of somatic cell cryopreservation. This procedure allows obtaining several cells from the individual even after its death, which is very important for applications in reproductive biotechnologies. This study's objective was to test cryopreservati...

The present study aimed to test the efficiency of transcervical artificial insemination techniques with cervical immobilization (TCAI-CI) or cervical traction (TCAI-CT), associated or not with the use of oxytocin (OT) as a protocol for cervical dilation, in the brown brocket deer ( Subulo gouazoubira ). The study was carried out in a crossover desi...

The south American deer species have been undergone to the decline of their populations. While free-living populations decrease, there is a descent in the genetic diversity and an increase in crossbreeding between related individuals (inbreeding). Assisted Reproductive Technology (ART) may help to preserve the genetic diversity in captive and free...

This study aimed to evaluate minimally invasive protocols for estrus synchronization in the brown brocket deer (Subulo gouazoubira). Females were submitted to Latin square design, in different treatments. All females received 0.25 mg of estradiol benzoate on the first day of treatment, concomitant with one of the following sources of progesterone:...

The pampas deer Ozotoceros bezoarticus is categorized as Near Threatened on the IUCN Red List. However, it now occurs in, <2% of the original extent of its southern range, in Argentina and Uruguay. Populations are small and isolated as a result of habitat loss to agriculture, and poaching. In 2020, we obtained support from the Uruguayan Ministry of...

Mazama simplicicornis argentina is the name that was given to describe a gray brocket collected by Lönberg in 1919 in the central Chaco region of Argentina. Subsequent authors, based on morphological similarities, considered this name to be a synonym for the species Subulo gouazoubira Fischer, 1814 from Paraguay. In the absence of genetic analyses...

Mazama nemorivaga (Cuvier, 1817) is a gray brocket deer that inhabits the Amazon region. An assessment of previous studies revealed inconsistencies in its current taxonomic classification, suggesting the need for an update in its genus classification. A taxonomic repositioning of this species is proposed through the collection of a specimen from it...

The Yucatan brown brocket deer was initially described as Mazama pandora Merriam, 1901. Phylogenetic analysis of mitochondrial DNA recovered the species as sister group of the genus Odocoileus and subsequently the species was repositioned to this genus naming Odocoileus pandora (Merriam, 1901). However, there is still a lack of taxonomic consensus...

Habitat use data are key to understanding species ecology and extinction risk. However, such information is lacking for the elusive deer species of Neotropical region. In this context, fecal sampling has emerged as an alternative tool, in which development and evaluation are essential to obtaining unbiased ecological data. We aimed to compare data...

The present study aimed to test the efficiency of transcervical artificial insemination techniques with cervical immobilization (TCAI-CI) or cervical traction (TCAI-CT), associated or not with the use of oxytocin (OT) as a protocol for cervical dilation, in the brown brocket deer (Subulo gouazoubira). The study was carried out in a crossover design...

Data on the reproductive physiology of the Brazilian dwarf brocket deer (Mazama nana) is still scarce in many aspects, such as its reproductive cycle and endocrine pattern. Therefore, this study aimed to characterize the estrous cycle (length and fecal progestagen metabolites -FPM- profile) in captive females of M. nana, by non-invasive hormonal mo...

Wild animals in captivity are often transferred to other facilities when cleaning or maintenance of the facilities where they live is carried out. The aim of this study was to assess the behavioural response of five red brocket males (Mazama rufa) after being moved to a new environment. The animals are kept in individual stalls, being eventually mo...

Pampas deer, Ozotoceros bezoarticus (Linnaeus, 1758), is found within a wide geographic distribution in Latin America with five subspecies recognized (O. b. bezoarticus, O. b. celer, O. b. uruguayensis, O. b. arerunguaensis and O. b. leucogaster). The limited access to biological material and the lack of genetic structure information, however, hind...

The gray brocket deer, Mazama gouazoubiraG. Fischer, 1814, occurs in South America and presents an extensive degree of morphological and genetic variability. Previous phylogenetic research showed that the genus Mazama is polyphyletic and imposed the designation of a different genus-group name for M. gouazoubira. We aimed to review and clarify the t...

Mammals are charismatic organisms that play a fundamental role in ecological functions and ecosystem services, such as pollination, seed dispersal, nutrient cycling, and pest control. The state of São Paulo represents only 3% of the Brazilian territory but holds 33% of its mammalian diversity. Most of its territory is dominated by agriculture, past...

Cervids are characterized by their greatest karyotypic diversity among mammals. A great diversity of chromosome numbers in notably similar morphological groups leads to the existence of several complexes of cryptic species and taxonomic uncertainties. Some deer lineages, such as those of Neotropical deer, stand out for a rapid chromosomal reorganiz...

To prioritise conservation actions and management strategies for threatened forest deer species at the Atlantic forest, we aimed to identify and describe the most suitable habitat areas for forest deer species and to indicate conservation measures for state agents and local communities. We adopt an approach based on ecological niche modelling, key...

The subspecies of pampas deer Ozotocerus bezoarticus uruguayensis is an endemic and endangered cervid from southeast Uruguay. However, knowledge regarding its home range requirements in agroecosystems is scarce. Our aim was to survey ten radio–collared pampas deer for two years to monitor their movements. The mean home–range size was 5.54 ± 3.18 km...

The brown brocket deer is a species of neotropical deer that is found in several regions of Brazil. Although not considered an endangered species, it can be used as a model for studies with somatic cell nuclear transfer (SCNT) in endangered species. Thus, this study aimed to verify the embryo development and nuclear gene expression in intraSCNT (bo...

Understanding the protein composition of the follicular fluid from brown brocket deer would aid the development of a medium for in vitro embryo production, which would in turn contribute toward programs for species preservation. Proteomic shotgun is a sensitive tool for analysis of complex protein mixtures. Thus, this study aimed to use shotgun tec...

Non-invasive endocrinology is an important tool for animal conservation, but its success depends on many factors (e.g. adequate hormonal extraction, diet, antibody used in the assay). Dietary fiber is one of the main sources that can lead to erroneous interpretation of the endocrine status provided by EIA analysis. This study aimed to evaluate the...

We analyzed Cryptosporidium spp. in fecal samples of wild cervids (Ozotoceros bezoarticus, Blastocerus dichotomus, Mazama nana, Mazama americana, and Mazama bororo) from many Brazilian regions, a fact unprecedented in the literature. Sniffer dogs were used to collect 936 fecal samples of cervids from 14 Brazilian localities. Cervids species were id...

Transplacental transmission of Neospora caninum and Toxoplasma gondii is well known in some domestic species and despite both parasites having been proved to infect deer fetuses during gestation, the congenital transmission rate in South-American deer species is still unknown. This study aimed to estimate the congenital transmission rate of neospor...

Mazama temama is the smallest red deer in Central America. It was one of the first species described for the genus, and until the end of the last century many authors considered it as a subspecies of Mazama americana due to morphological similarities. Cytogenetic studies of animals in captivity have shown different karyotypes that led to its recog...

The red brocket deer is defined as a complex of cryptic species within Mazama americana due to an important taxonomic uncertainty related to the karyotypic differences, therefore the species is categorized as ‘data deficient’ in IUCN red list. Despite its wide distribution, the red brocket’s habitat is shrinking and becoming fragmented, limiting th...

The small red brocket deer, Mazama bororo Duarte, 1996 was described based on karyotypical and morphological characters. However, the original description of Mazama americana jucunda suggested that this subspecies could represent the same taxon as Mazama bororo. This assumption was based on the type locality of Mazama americana jucunda and on morph...

The red brocket deer Mazama americana Erxleben, 1777 is considered a polyphyletic complex of cryptic species with wide chromosomal divergence. Evidence indicates that the observed chromosomal divergences result in reproductive isolation. The description of a neotype for M. americana allowed its genetic characterization and represented a comparative...

Deer species play a key role in processes that maintain ecosystem community structure and composition. However, several of the species are considered at risk of extinction. One of the strategies for their conservation is the maintenance of legally protected areas in which administration is prescribed by a management plan. Species inventories form t...

The Atlantic Forest, a hotspot for biodiversity conservation, harbours five forest deer species (Mazama spp.). Due to their elusiveness, there is a severe scarcity of occurrence data to support ecological studies and conservation planning. Thus, we assembled an occurrence dataset of Atlantic Forest deer with reliable taxonomic information aggregati...

https://genprotocols.genengnews.com/protocols/skin-freezing-technique-for-living-cell-bank/1041/pdf

One of the most significant challenges in deer is the ability to maintain genetic diversity, avoiding inbreeding and sustaining population health and reproduction. Although our general knowledge of reproductive physiology is improving, it appears that the application of assisted reproductive technology (ART) will more efficiently advance wildlife c...

Cervids show a high degree of abnormalities in their sperm cells. Thus, this study aimed to select high-quality spermatozoa using magnetic-activated sperm sorting (MASS) compared to density gradient centrifugation (DGC) by assessing the post-selection cell quality. Semen from six Mazama deer was collected by electroejaculation after chemical restra...

Photoperiod is the main cue that controls seasonal reproduction in deer from temperate regions, like secretion of testosterone by the testis, neck enlargement, and testis development. However, little is known about its effect on the reproduction of tropical deer species. This research aimed to assess the potential seasonality of the brown brocket d...

The genus Mazama stands out among the Neotropical deer due to their wide intra and interspecific karyotypic diversification, which is associated with an accentuated chromosomal fragility. There are reports of heterozygous Robertsonian translocation (RT) carriers in a free-range population of Mazama gouazoubira (brown brocket deer), as well as in ca...

The Neotropical region has one of the richest diversities regarding deer species, with 17 currently identified. The genus Mazama is endemic to this region and the most diverse, with 10 species, although, certainly, there are more to be described. One of the least known Mazama species is M. nemorivaga, which has been recently recognized as a distinc...

The behavior of a mother-fawn dyad of red brocket deer kept in captivity was continuously recorded during the first 72 h post-birth. Maternal care started immediately after delivery. It took the fawn 6 min to stand up and 8.5 min to take its first steps. The first suckling was observed at 17.67 min postpartum, and a total of 94 suckling bouts avera...

This research had as objective to evaluate the occurrence and to characterize genetically the infections by Cryptosporidium in Mazama gouazoubira. By a non-invasive harvest methodology using trained sniffer dogs to locate fecal samples of cervids, 642 fecal samples were obtained from six Brazilian localities. The cervids species responsible for the...

Exotic species are known to cause an impact on native species and the environment through various ecological processes. Their impact on disease dynamics is not completely understood, but their relationship with the local fauna can favour the emergence of zoonoses. We reported records of predation of feral pigs (Sus scrofa) by common vampire bats (D...

Chromosomal polymorphism plays a major role in speciation processes in mammals with high rates of karyotypic evolution, as observed in the family Cervidae. One remarkable example is the genus Mazama that comprises wide inter- and intra-specific chromosomal variability. To evaluate the impact of chromosomal polymorphisms as reproductive barriers wit...

Within a species, some individuals are better able to cope with threatening environments than others. Paca (Cuniculus paca) appear resilient to over-hunting by humans, which may be related to the behavioural plasticity shown by this species. To investigate this, we submitted captive pacas to temperament tests designed to assess individual responses...

The taxonomy and phylogenetics of Neotropical deer have been mostly based on morphological criteria and needs a critical revision on the basis of new molecular and cytogenetic markers. In this study, we used the variation in the sequence, copy number, and chromosome localization of satellite I-IV DNA to evaluate evolutionary relationships among eig...

In vitro production of embryos has gained prominence as a tool for use in wildlife conservation programmes in situ and ex situ . However, the development of this technique depends on steps that include ovarian stimulation, collection and oocyte maturation. The purpose of this study was to assess the feasibility of an ovarian stimulation protocol fo...

O presente guia, contemplando a descrição de oito espécies de cervídeos que ocorrem no Brasil, é um marco fundamental e representa um resultado de extrema importância por seu valor como ferramenta de identificação acessível a acadêmicos e amantes da natureza. Esta obra conta com descrições detalhadas, mapas de ocorrência e inúmeras pranchas compara...

The marsh deer is a species that is at risk of extinction, being classified as vulnerable by the IUCN red list. One of the main tools for the maintenance of threatened wild populations is the creation of genomic banks representative of the genetic diversity of the remaining populations. Due to the difficulties in obtaining gametes and embryos in wi...

The marsh deer is an endangered species, where the achievement of embryos and gametes has proved to be complex. In order to maintain the genetic diversity of populations, obtaining adult stem cells and further differentiating them into gametes would be of great interest in the conservation of the species. In this perspective, this work sought to di...

Biological invasion is one of the main threats to native biodiversity. For a species to become invasive, it must be voluntarily or involuntarily introduced by humans into a nonnative habitat. Mammals were among first taxa to be introduced worldwide for game, meat, and labor, yet the number of species introduced in the Neotropics remains unknown. In...