Jose A. Alves

University of Aveiro | UA · Deparment of Biology & CESAM

Knowledge of the habitat requirements for migratory species throughout their full annual cycle is necessary for comprehensive species protection plans. By describing seasonal shifts of space‐use patterns in a key nonbreeding area, the Senegal Delta (Mauritania, Senegal), this study addresses a significant knowledge gap in the annual cycle of the ra...

The Bijagós Archipelago in West Africa is home to an ethnic group with a rich cultural heritage that is tightly linked to nature. The Bijagós people have a shared cultural identity, but management of natural resources varies between islands due to island‐specific context with regards to socio‐political organization and strength of cultural heritage...

Shorebirds migrating along the East Atlantic Flyway must travel long distances from their breeding sites in arctic and subarctic regions to wintering areas in Europe and Africa. Selecting a winter location is an important decision, as it can have both immediate and future consequences. Shorebirds must ensure they have enough resources to fulfil the...

Among migratory vertebrates, high levels of fidelity to non‐breeding sites during adulthood are common. If occupied sites vary in quality, strong site fidelity can have profound consequences for individual fitness and population demography. Given the prevalence of adult site fidelity, the regions of the non‐breeding range to which juveniles first m...

Collecting empirical data is essential for understanding the ecology and biology of a species. If the data collection procedure includes direct interaction with the study subject, particularly regarding repeated measures, there may be a risk of introducing biases on the collected dataset due to changes in the behaviour and/or physiology of the stud...

Electronic tracking has enabled rapid advances in knowledge of the movement behaviour and habitat use of shorebirds (Charadriiformes), and is thus making a growing contribution to their conservation. However, developing a useful coherent global strategy for tracking these taxa requires an overview of the current availability of data and how it vari...

Degradation of natural and semi‐natural habitats is often initiated and facilitated by expansions in anthropogenic infrastructures. Identifying and reducing the impact of anthropogenic structures on the wildlife that these habitats support is vital for biodiversity conservation. In Iceland, the number of summer houses has increased over the past tw...

When wintering at different sites, individuals from the same breeding population can experience different conditions, with costs and benefits that may have implications throughout their lifetime. Using a dataset from a longitudinal study on Eurasian Spoonbills from southern France, we explored whether survival rate varied among individuals using di...

Climate change is expected to increase the spatial autocorrelation of temperature, resulting in greater synchronization of climate variables worldwide. Possibly such ‘homogenization of the world’ leads to elevated risks of extinction and loss of biodiversity. In this study, we develop an empirical example on how increasing synchrony of global tempe...

Migratory behaviour in young individuals is likely developed by using a complex suite of resources, from molecular information to social learning. Comparing the migration of adults and juveniles provides insights into the possible contribution of those developmental factors to the ontogeny of migration. We show that, like adults, juvenile Icelandic...

Advancing breeding phenology is a commonly‐observed response to climate warming among bird species, potentially in response to shifts in phenology of key resources. However, for migratory birds breeding at high latitudes, their capacity to breed earlier may be constrained by the time available between arrival on the breeding grounds and nesting, es...

The Eurasian Spoonbill Platalea leucorodia is currently experiencing an increasing population trend in Western Europe and colonising areas in its breeding range. In this study we assessed the diet and trophic ecology of spoonbill chicks in Portuguese colonies (Ria Formosa and Tagus Estuary) occupied at different years during the population expansio...

Protected areas (PAs) are a core component of conservation policy and practice. However, many species for which they are designated are highly mobile, and may move among sites within and beyond PA boundaries. Environmental impacts on sites beyond those boundaries could thus impact the PA's protected populations, with the risk of adversely affecting...

The coastal intertidal ecosystem of the Bijagós Archipelago, Guinea-Bissau, one of the largest and most important in West Africa, sustains a considerable proportion of the migratory shorebird populations of the East Atlantic Flyway and operates as a nursery area for benthic fish in the region. The macrozoobenthos in these mudflats constitute the ma...

This report should be cited as: Martins, RC, Moniz, F, Alves, JA, Belo, J, Carvalho, AT, Catry, T, Cordeiro, A, Costa, H, Costa, JS, Encarnação, V, Lourenço, PM, Nightingale, J, Pardal, S, Paulino, J, Raposo, D, Rocha, A, Silvério, A, Dias, MP. (2022) Contagens Mensais de Aves Aquáticas no Estuário do Tejo, 2007-2021. Em: Alonso H, Andrade J, Teod...

Matching the timing of annual cycle events with the required resources can have crucial consequences for individual fitness. But as the annual cycle is composed of sequential events, a delay at any point may be carried over to the subsequent stage (or more, in a domino effect) and negatively influence individual performance. To investigate how migr...

Despite the widely recognized value of wetlands in providing vital ecosystem services, these are presently being degraded and ultimately destroyed, leading to a decrease in the biodiversity associated with these areas. Some species inextricably linked to wetlands, however, have been increasing and (re)colonizing areas across their range; a notable...

In migratory systems, variation in individual phenology can arise through differences in individual migratory behaviors, and this may be particularly apparent in partial migrant systems, where migrant and resident individuals are present within the same population. Links between breeding phenology and migratory behavior or success are generally inv...

Planting forests is a commonly suggested measure to mitigate climate change. The resulting changes in habitat structure can greatly influence the diversity and abundance of pre‐existing wildlife. Understanding these consequences is key for avoiding unintended impacts of afforestation on habitats and populations of conservation concern. Afforestatio...

Yearly electricity production has increased steadily in the world in recent decades and the associated overhead power lines are widespread and occur across urban and natural habitats, and often in remote areas where there is little other anthropogenic influence. Here we assessed the effects of overhead power lines on the density of ground‐nesting b...

Understanding the relationship between migratory performance and fitness is crucial for predicting population dynamics of migratory species. In this study, we used geolocators to explore migration performance (speed and duration of migratory movements, migratory timings) and its association with breeding phenology and productivity in an Afro-Palear...

Long‐distance migratory species often include multiple breeding populations, with distinct migration routes, wintering areas and annual‐cycle timing. Detailed knowledge on population structure and migratory connectivity provides the basis for studies on the evolution of migration strategies and for species conservation. Currently, five subspecies o...

1. To be effective, the next generation of conservation practitioners and managers need to be critical thinkers with a deep understanding of how to make evidence-based decisions and of the value of evidence synthesis. 2. If, as educators, we do not make these priorities a core part of what we teach, we are failing to prepare our students to make an...

What determines why some birds migrate and others do not? This question is fundamental to understanding how migratory systems are responding to environmental changes, but the causes of individual migratory behaviours have proven difficult to isolate. We show that, in a partially migratory population of Eurasian oystercatchers ( Haematopus ostralegu...

Understanding how individual tradeoffs and carry‐over effects along the annual cycle influence fitness is fundamental to unravel population dynamics, but such data is particularly challenging to collect in long‐distance migrants. Here, with a full annual cycle perspective of Icelandic whimbrels Numenius phaeopus islandicus, we investigate tradeoffs...

1. To be effective, the next generation of conservation practitioners and managers need to be critical thinkers with a deep understanding of how to make evidence‐based decisions and of the value of evidence synthesis. 2. If, as educators, we do not make these priorities a core part of what we teach, we are failing to prepare our students to make an...

The Arctic is entering a new ecological state, with alarming consequences for humanity. Animal-borne sensors offer a window into these changes. Although substantial animal tracking data from the Arctic and subarctic exist, most are difficult to discover and access. Here, we present the new Arctic Animal Movement Archive (AAMA), a growing collection...

Ecological “big data” Human activities are rapidly altering the natural world. Nowhere is this more evident, perhaps, than in the Arctic, yet this region remains one of the most remote and difficult to study. Researchers have increasingly relied on animal tracking data in these regions to understand individual species' responses, but if we want to...

Occurring across Eurasia, the Black-tailed Godwit Limosa limosa has three recognized subspecies, from east to west melanuroides, limosa, and islandica, respectively. With the smallest body size, melanuroides has been considered the only subspecies in the East Asian-Australasian Flyway. Yet, observations along the Chinese coast indicated the presenc...

Amongst other factors, host behaviour critically determines the patterns with which blood parasites occur in wild host populations. In particular, migratory hosts that sequentially occupy distant sites within and across years are expected to show distinct patterns of blood parasitism depending on their population-specific schedules and whereabouts....

Migratory behavior can differ markedly amongst individuals within populations or species. Understanding the factors influencing this variation is key to understanding how current environmental changes might influence migratory propensity and the distribution and abundance of migratory species across their range. Here, we investigate variation in mi...

For many migratory species, migration can represent a significant part of the annual cycle and the strategies used to move between the breeding and non-breeding areas vary considerably. Weather conditions are important during migration, particularly wind and temperature, and can play a crucial role in the timing of events during the annual cycle of...

Capsule: A combination of several biometric measures enables the reliable sexing of the European Bee-eater Merops apiaster, a species with subtle sex differences in plumage and morphometry. Aims: To explore variation in biometrics and their suitability to discriminate sex in adult European Bee-eaters Merops apiaster. Methods: We sampled populations...

Ground‐nesting species are vulnerable to a wide range of predators, and often experience very high levels of nest predation. Strategies to reduce nest vulnerability can include concealing nests in vegetation and/or nesting in locations in which nests and eggs are camouflaged and less easy for predators to locate. These strategies could have importa...

Background Accurate estimation of nestlings’ age is essential in avian demography studies as well as in population ecology and conservation. For example, it can be useful for synchronizing nest visits with events of particular interest, such as the age at which young can be safely ringed, or in choosing the best period to attain the most accurate c...

Aim Knowledge of broad‐scale biogeographical patterns of animal migration is important for understanding ecological drivers of migratory behaviours. Here, we present a flyway‐scale assessment of the spatial structure and seasonal dynamics of the Afro‐Palaearctic bird migration system and explore how phenology of the environment guides long‐distance...

Evolutionary theories of seasonal migration generally assume that the costs of longer migrations are balanced by benefits at the non‐breeding destinations. We tested, and rejected, the null hypothesis of equal survival and timing of spring migration for High Arctic breeding sanderling Calidris alba using six and eight winter destinations between 55...

Many migratory systems are changing rapidly in space and time, and these changes present challenges for conservation. Changes in local abundance and site occupancy across species' ranges have raised concerns over the efficacy of the existing protected area networks, while changes in phenology can potentially create mismatches in the timing of annua...

In migratory birds, early arrival on breeding sites is typically associated with greater breeding success, but the mechanisms driving these benefits are rarely known. One mechanism through which greater breeding success among early arrivers can potentially be achieved is the increased time available for replacement clutches following nest loss. How...

Mechanisms underlying fat accumulation for long-distance migration are not fully understood. This is especially relevant in the context of global change, as many migrants are dealing with changes in natural habitats and associated food sources and energy stores. The continental Black-tailed godwit Limosa limosa limosa is a long-distance migratory b...

The timing of annual events is key for organisms that exploit seasonal resources, as deviations from optimal timing might result in considerable fitness costs. Under strong time selection, individuals likely have fewer suitable strategies available than when selection is more relaxed, hence both consistency and flexibility might be advantageous dep...

Climatic scenarios for the Mediterranean predict an increase in drought and erratic precipitation, which may affect waterbirds breeding in freshwater habitats. Artificial wetlands may provide an alternative for these species when conditions in natural habitats deteriorate. We studied Little Ringed Plovers Charadrius dubius nesting in natural stream...

Kubelka et al . (Reports, 9 November 2018, p. 680) claim that climate change has disrupted patterns of nest predation in shorebirds. They report that predation rates have increased since the 1950s, especially in the Arctic. We describe methodological problems with their analyses and argue that there is no solid statistical support for their claims.

Across their ranges, different populations of migratory species often use separate routes to migrate between breeding and non‐breeding grounds. Recent changes in climate and land‐use have led to breeding range expansions in many species but it is unclear whether these populations also establish new migratory routes, non‐breeding sites and migration...

Kubelka et al. (Science, 9 November 2018, p. 680-683) claim that climate change has disrupted patterns of nest predation in shorebirds. They report that predation rates have increased since the 1950s, especially in the Arctic. We describe methodological problems with their analyses and argue that there is no solid statistical support for their clai...

Few studies have been able to directly measure the seasonal survival rates of migratory species or determine how variable the timing of migration is within individuals and across populations over multiple years. As such, it remains unclear how likely migration is to affect the population dynamics of migratory species and how capable migrants may be...

Non-breeding movement strategies of migratory birds may be expected to be flexibly adjusted to the distribution and quality of habitat, but few studies compare movement strategies among populations using distinct migration routes and wintering areas. In our study, individual movement strategies of red-necked phalaropes (Phalaropus lobatus), a long-...

Currently, the deployment of tracking devices is one of the most frequently used approaches to study movement ecology of birds. Recent miniaturization of light‐level geolocators enabled studying small bird species whose migratory patterns were widely unknown. However, geolocators may reduce vital rates in tagged birds and may bias obtained movement...

In many taxa, the most common form of sex-biased migration timing is protandry-the earlier arrival of males at breeding areas. Here we test this concept across the annual cycle of long-distance migratory birds. Using more than 350 migration tracks of small-bodied trans-Saharan migrants, we quantify differences in male and female migration schedules...

Phenological changes in response to climate change have been recorded in many taxa, but the population‐level consequences of these changes are largely unknown. If phenological change influences demography, it may underpin the changes in range size and distribution that have been associated with climate change in many species. Over the last century,...

Migration is fundamental in the life of many birds and entails significant energetic and time investments. Given the importance of arrival time in the breeding area and the relatively short period available to reproduce (particularly at high latitudes), it is expected that birds reduce spring migration duration to a greater extent than autumn migra...

Shorebirds (Charadriiformes) undergo rapid migrations with potential for long‐distance dispersal (LDD) of plants. We studied the frequency of endozoochory by shorebirds in different parts of Europe covering a broad latitudinal range and different seasons. We assessed whether plants dispersed conformed to morphological dispersal syndromes. A total o...

The capacity of different landscapes to sustain viable populations depends on the spatial and temporal availability of key population-specific resources. Heterogeneous landscapes provide a wider range of resources and often sustain higher levels of biodiversity than homogeneous ones. Across the globe, agricultural expansion has resulted in large-sc...

Nocturnal avian migration flyways remain an elusive concept, as we have largely lacked methods to map their full extent. We used the network of European weather radars to investigate nocturnal bird movements at the scale of the European flyway. We mapped the main migration directions and showed the intensity of movement across part of Europe by ext...

For migratory birds, selecting a wintering location is extremely important as conditions experienced in winter can have both immediate and future consequences through carry-over effects. The Bijagós archipelago, in West Africa, hosts large numbers of migratory waders during winter. Despite the extensive feeding areas available, and several roosting...