John D Marshall

Swedish University of Agricultural Sciences | SLU · Department of Forest Ecology and Management

Water-stable isotopes are commonly used in hydrological and ecological research. Until now, measurements were obtained either by taking a destructive sample in the field (such as a soil or plant sample) and extracting its water in the laboratory, or by directly measuring it in the field using semi-permeable membranes. These methods, however, presen...

Carbon dioxide sequestration from the atmosphere is commonly assessed using the eddy covariance method. Its net flux signal can be decomposed into gross primary production and ecosystem respiration components, but these have seldom been tested against independent methods. In addition, eddy covariance lacks the ability to partition carbon sequestrat...

We compared three methods of estimating gross primary production (GPP) of a boreal forest dominated by spruce and pine with the goals of 1) converging on the best estimate and 2) disaggregating the GPP among the two canopy species and the understory stratum. The three methods were: 1) eddy covariance (EC), 2) a soil-vegetation-atmosphere transfer m...

Seminal scientific papers positing that mycorrhizal fungal networks can distribute carbon (C) among plants have stimulated a popular narrative that overstory trees, or ‘mother trees’, support the growth of seedlings in this way. This narrative has far‐reaching implications for our understanding of forest ecology and has been controversial in the sc...

Nitrogen (N) fertilization increases biomass and soil organic carbon (SOC) accumulation in boreal pine forests, but the underlying mechanisms remain uncertain. At two Scots pine sites, one undergoing annual N fertilization and the other a reference, we sought to explain these responses. We measured component fluxes, including biomass production, SO...

The cells in tree sapwood form a network of interconnected conduits which enables the transport of water and nutrients from the tree roots to the canopy. Sapwood depth must be assessed when tree water use is estimated from sap flow velocities. However, current approaches to assess sapwood depth are either not applicable universally, or require expe...

The boreal forest is an important global carbon (C) sink. Since low soil nitrogen (N) availability is commonly a key constraint on forest productivity, the prevalent view is that increased N input enhances its C sink-strength. This understanding however relies primarily on observations of increased aboveground tree biomass and soil C stock followin...

There is evidence that carbon fluxes and stocks decrease with increasing latitude in boreal forests, suggesting a reduction in carbon use efficiency. While vegetation and soil carbon dynamics have been widely studied, the empirical finding that ectomycorrhizal fungi (ECM) become more abundant towards the north has not been quantitatively linked to...

Alternative water uptake pathways through leaves and bark complement water supply with interception, fog or dew. Bark water‐uptake contributes to embolism‐repair, as demonstrated in cut branches. We tested whether bark water‐uptake could also contribute to supplement xylem‐water for transpiration. We applied bandages injected with 2H‐enriched water...

Using water-stable isotopes to track plant water uptake or soil water processes has become an invaluable tool in ecohydrology and physiological ecology. Recent studies have shown that laser absorption spectroscopy can measure equilibrated water vapour well enough to support inference of liquid-stable isotope composition of plant or soil water, on-s...

Vegetation changes can strongly influence the hydrological cycle, including streamflow, but the effects of plant diseases have seldom been described. In the mid-20th century, the invasion of an exotic disease, white pine blister rust, precipitated widespread mortality of western white pine (WWP; Pinus monticola Dougl.) in the northern Rocky Mountai...

Using water stable isotopes to track plant water uptake or soil water processes has become an invaluable tool in ecohydrology and physiological ecology. Recent studies have shown that laser absorption spectroscopy can measure equilibrated water vapour well enough to support inference of liquid stable isotope composition of plant or soil water, on-s...

Trees are long-lived organisms that contribute to forest development over centuries and beyond. However, trees are vulnerable to increasing natural and anthropic disturbances. Spatially distributed, continuous data are required to predict mortality risk and impact on the fate of forest ecosystems. In order to enable monitoring over sensitive and of...

Boreal forests undergo a strong seasonal photosynthetic cycle; however, the underlying processes remain incompletely characterized. Here, we present a novel analysis of the seasonal diffusional and biochemical limits to photosynthesis (Anet) relative to temperature and light limitations in high‐latitude mature Pinus sylvestris, including a high‐res...

Rationale: New methods to measure stable isotopes of soil and tree water directly in the field enable us to increase the temporal resolution of obtained data and advance our knowledge on the dynamics of soil and plant water fluxes. Only few field applications exist. However, these are needed to further improve novel methods and hence exploit their...

Nitrogen (N) addition causes rapid accumulation of carbon (C) in the soils of boreal forests. The C accumulation has been attributed to an increase in C supply to the soil, to a decrease in mineralization of organic C to CO2, or some combination of the two. We sought to quantify the proportional causes in a case study in a boreal Scots pine forest...

Climate-smart forestry (CSF) consists of an extensive framework of actions directed to mitigating and adapting to global climate change impacts on the resilience and productivity of forest ecosystems. This study investigates the impact of the pan-European 2018 drought on carbon exchange dynamics in typical highland and mountain forests in the Czech...

Mixed forests have been recommended to replace monocultures, often being more productive and resilient ecosystems. Those benefits of species mixing have been suggested to be attributed to lower competition (above- and belowground) due to potential separation of resource acquisition strategies, yet a mechanistic understanding of belowground processe...

The intensity and frequency of droughts events are projected to increase in future with expected adverse effects for forests. Thus, information on the dynamics of tree water uptake from different soil layers during and after drought is crucial. We applied an in situ water isotopologue monitoring system to determine the oxygen isotope composition in...

Considering the temporal responses of carbon isotope discrimination (Δ13C) to local water availability in the spatial analysis of Δ13C is essential for evaluating the contribution of environmental and genetic facets of plant Δ13C. Using tree-ring Δ13C from years with contrasting water availability at 76 locations across the natural range of lobloll...

The occurrence of extreme drought poses a severe threat to forest ecosystems and reduces their capability to sequester carbon dioxide. This study analysed the impacts of a central European summer drought in 2015 on gross primary productivity (GPP) at two Norway spruce forest sites representing two contrasting climatic conditions—cold and humid clim...

Understanding how plant water uptake interacts with acquisition of soil nitrogen (N) and other nutrients is fundamental for predicting plant responses to a changing environment, but it is an area where models disagree. We present a novel isotopic labelling approach which reveals spatial patterns of water and N uptake, and their interaction, by tree...

Adding nitrogen to boreal forest ecosystems commonly increases gross primary production (GPP). The effect of nitrogen addition on ecosystem GPP is convoluted due to the impacts of and interactions among leaf scale photosynthetic productivity, canopy structure, site fertility, and environmental constraints. We used a unique controlled nitrogen ferti...

Trees receive growth‐limiting nitrogen from their ectomycorrhizal symbionts, but supplying the fungi with carbon can also cause nitrogen immobilization, which hampers tree growth. We present results from field and greenhouse experiments combined with mathematical modelling, showing that these are not conflicting outcomes. Mycorrhizal networks conne...

Climate-smart forestry (CSF) is an emerging branch of sustainable adaptive forest management aimed at enhancing the potential of forests to adapt to and mitigate climate change. It relies on much higher data requirements than traditional forestry. These data requirements can be met by new devices that support continuous, in situ monitoring of fores...

Boreal forests store approximately 470 Pg of carbon (C) in the soil, and rates of soil C accumulation are significantly enhanced by long-term nitrogen (N) enrichment. Dissecting the compositional profile of soils could help better understand the potential mechanisms driving changes in C cycling under enriched N conditions. We examined the impacts o...

It is well established that nutrient addition influences ecosystem features such as productivity, carbon storage, soil acidification and biodiversity. Less studied are long-term effects of sustained fertiliser application on forest soil characteristics and nutrient supplies, and especially direct and indirect mechanisms underlying changes. We inves...

The mycorrhizal symbiosis is ubiquitous in boreal forests. Trees and plants provide their fungal partners with photosynthetic carbon in exchange for soil nutrients like nitrogen, which is critical to the growth and survival of the plants. But plant carbon allocation to mycorrhizal symbionts can also fuel nitrogen immobilization, hampering tree grow...

Forests pass water and carbon through while converting portions to streamflow, soil organic matter, wood production, and other ecosystem services. The efficiencies of these transfers are but poorly quantified. New theory and new instruments have made it possible to use stable isotope composition to provide this quantification of efficiencies wherev...

Although aspects of forest ecophysiology and forest environments have received considerable attention from research scientists in the last three decades, assessment of implications for meeting the climate targets and international agreements is still a matter of debate [...]

Interpreting phloem carbohydrate or xylem tissue carbon isotopic composition as measures of water‐use efficiency or past tree productivity requires in‐depth knowledge of the factors altering the isotopic composition within the pathway from ambient air to phloem contents and tree ring. One of least understood of these factors is mesophyll conductanc...

Photosynthetic water‐use efficiency (WUE) describes the link between terrestrial carbon (C) and water cycles. Estimates of intrinsic WUE (iWUE) from gas exchange and C isotopic composition (δ¹³C) differ due to an internal conductance in the leaf mesophyll (gm) that is variable and seldom computed. We present the first direct estimates of whole‐tree...

Supplementary Material of De Deurwaerder et al, 2020

Stable isotopologues of water are widely used to derive relative root water uptake (RWU) profiles and average RWU depth in lignified plants. Uniform isotope composition of plant xylem water (δxyl) along the stem length of woody plants is a central assumption of the isotope tracing approach which has never been properly evaluated. Here we evaluate w...

Several studies have suggested that CO2 transport in the transpiration stream can considerably bias estimates of root and stem respiration in ring-porous and diffuse-porous tree species. Whether this also happens in species with tracheid xylem anatomy and lower sap flow rates, such as conifers, is currently unclear. We infused 13C-labeled solution...

Resilience is a key concept in ecology, describing the capacity of a system to resist a disturbance, recover from it and return to a stable state (Lloret et al., 2011; Hodgson et al., 2015; Ingrisch & Bahn, 2018, see Box 1). Whilst it is indisputable and a matter of intensive research (e.g., Mcdowell et al., 2008; Meinzer et al., 2009; Vicente‐Serr...

Gross primary production (GPP) is a key component of the forest carbon cycle. However, our knowledge of GPP at the stand scale remains uncertain because estimates derived from eddy covariance (EC) rely on semi‐empirical modeling and the assumptions of the EC technique are sometimes not fully met. We propose using the sap flux/isotope method as an a...

Forest water use has been difficult to quantify. One promising approach is to measure the isotopic composition of plant water, e.g., the transpired water vapor or xylem water. Because different water sources, e.g., groundwater versus shallow soil water, often show different isotopic signatures, isotopes can be used to investigate the depths from wh...

As universities incorporate new and diverse ecological disciplines into natural resource programs, students are required to learn more information within a finite degree period. Consequently, instructors often struggle to teach difficult and complex scientific concepts in limited time frames. One solution to this problem is collaborative learning....

1. Climate change is a world-wide threat to biodiversity and ecosystem structure, functioning and services. To understand the underlying drivers and mechanisms, and to predict the consequences for nature and people, we urgently need better understanding of the direction and magnitude of climate change impacts across the soil–plant–atmosphere contin...

Gross primary production (GPP) is a key component of the forest carbon cycle. However, our knowledge of GPP at the stand scale remains uncertain, because estimates derived from eddy covariance (EC) rely on semi-empirical modelling and the assumptions of the EC technique are sometimes not fully met. We propose using the sap flux/isotope method as an...

Drought frequency and intensity are projected to increase throughout the Southeastern USA, the natural range of loblolly pine (Pinus taeda L.), and are expected to have major ecological and economic implications. We analyzed the carbon and oxygen isotopic compositions in tree ring cellulose of loblolly pine in a factorial drought (~30% throughfall...

Climate change is a worldwide threat to biodiversity and ecosystem structure, functioning, and services. To understand the underlying drivers and mechanisms, and to predict the consequences for nature and people, we urgently need better understanding of the direction and magnitude of climate‐change impacts across the soil–plant–atmosphere continuum...

Mesophyll conductance (gm) is a critical variable for the use of stable carbon isotopes to infer photosynthetic water-use efficiency (WUE). Although gm is similar in magnitude to stomatal conductance (gs), it has been measured less often, especially under field conditions and at high temporal resolution. We mounted an isotopic CO2 analyser on a fie...

Low-molecular weight organic compounds (LMWOC) play a key role in soil respiration. Thus, a detailed understanding of their dynamics is important for any attempt to describe carbon cycling of ecosystems. Measurements of LMWOC have been compromised by the perturbation associated with traditional soil extraction methods. Due to the fast turnover of L...

In situ methods enabling high-resolution measurements of water isotopes in the tree xylem have already been tested but are not yet widely applied. However, such methods would be tremendously helpful in understanding water uptake in plants and related research questions (e.g. uptake depths, non-steady-state of transpiration, impact on groundwater re...

Photosynthetic models are widely used to estimate photosynthetic rate for leaves and canopies. Canopy-scale measurements have mostly been based on eddy-covariance data, as have model parameterizations. There has been no adequate means of testing the resulting estimates of gross primary production (GPP). It has been noted that it should be possible...

Terrestrial ecosystems play a very significant role in driving two large global cycles: the carbon and the water cycle. The balance between these two cycles can be described from the plant perspective as water-use efficiency (WUE), briefly photosynthesis/transpiration (A/E). WUE can be defined and interpreted on leaf- to plant- to stand or ecosyste...

Woody plants vary in their adaptations to drought and shade. For a better prediction of vegetation responses to drought and shade within dynamic global vegetation models, it is critical to group species into functional types with similar adaptations. One of the key challenges is that the adaptations are generally determined by a large number of pla...

Cellular respiration via the alternative oxidase pathway (AOP) leads to a considerable loss in efficiency. Compared to the cytochrome pathway (COP), AOP produces 0‐50% as much ATP per carbon (C) respired. Relative partitioning between the pathways can be measured in vivo based on their differing isotopic discriminations against ¹⁸O in O2. Starting...

In this commentary, we summarize and build upon discussions that emerged during the workshop “Isotope-based studies of water partitioning and plant–soil interactions in forested and agricultural environments” held in San Casciano in Val di Pesa, Italy, in September 2017. Quantifying and understanding how water cycles through the Earth's critical zo...

Handbook for standardized methods in terrestrial global change experiments

In this commentary, we build on discussions that emerged during the workshop "Isotope-based studies of water partitioning and plant-soil interactions in forested and agricultural environments" held in San Casciano Val di Pesa, Italy, in September 2017. Quantifying and understanding how water cycles through the Earth's critical zone is important to...

Mountainous terrain creates variability in microclimate, including nocturnal cold air drainage and resultant temperature inversions. Driven by the elevational temperature gradient, vapor pressure deficit (VPD) also varies with elevation. Soil depth and moisture availability often increase from ridgetop to valley bottom. These variations complicate...

Apparent net uptake of carbon dioxide (CO2) during wintertime by a ∼ 90-year-old Scots pine stand in northern Sweden led us to conduct canopy decoupling and subcanopy advection investigations over an entire year. Eddy covariance (EC) measurements ran simultaneously above and within the forest canopy for that purpose. We used the correlation of abov...