Joeselle Serrana

Stockholm University | SU · Department of Environmental Science

Human noroviruses are excreted in feces from infected individuals and included in wastewater. It is critical to remove/inactivate them in wastewater treatment processes, particularly in the disinfection step, before release to aquatic environments. However, the high mutation rates of human noroviruses raise concerns about the emergence of strains t...

Sediment bypass tunnels (SBTs) are guiding structures used to reduce sediment accumulation in reservoirs during high flows by transporting sediments to downstream reaches during operation. Previous studies monitoring the ecological effects of SBT operations on downstream reaches suggest a positive influence of SBTs on riverbed sediment conditions a...

Conventional morphology-based identification is commonly used for routine assessment of freshwater ecosystems. However, cost and time efficient techniques such as high-throughput sequencing (HTS) based approaches may resolve the constraints encountered in conducting morphology-based surveys. Here, we characterized stream macroinvertebrate species d...

• Comprehensive restoration programs are expected to influence sediment-associated microbial community structure and functional diversity following changes attributed to the restoration of habitat characteristics in the dam-impacted channel. • To address if the construction or recreation of in-channel structures, i.e., gravel bars, by implementing...

It is essential to explore and define the level of taxonomic identification and quantification approaches for diversity and biomonitoring studies, given their potential influence on assessing and interpreting ecological outcomes. This study assessed the response of benthic macroinvertebrate communities to restore and construct gravel bars in a dam-...

Exploring diversity and community composition patterns across evolutionary and functionally diverse organisms is critical for understanding the general processes that shape biodiversity in response to environmental changes. Knowledge of multi-trophic relationships offers valuable insights to support the effective assessment and management of freshw...

Background Beta-diversity is a fundamental ecological metric for exploring dissimilarities between microbial communities. On the functional dimension, metaproteomics data can be used to quantify beta-diversity to understand how microbial community functional profiles vary under different environmental conditions. Conventional approaches to metaprot...

Microbial communities in the hyporheic zone are important for self-purification as the riverbed is metabolically active and responsible for the retention, storage, and mineralisation of organic matter transported in the surface water. Studies exploring the response of the hyporheic microbial community to flow regime alterations remain scarce. Here,...

Metabarcoding is a molecular-based tool capable of large quantity high-throughput species identification from bulk samples that is a faster and more cost-effective alternative to conventional DNA-sequencing approaches. Still, further exploration and assessment of the laboratory and bioinformatics strategies are required to unlock the potential of m...

Abstract Functional redundancy is a key ecosystem property representing the fact that different taxa contribute to an ecosystem in similar ways through the expression of redundant functions. The redundancy of potential functions (or genome-level functional redundancy $${{{{{{\rm{FR}}}}}}}_{g}$$ FR g ) of human microbiomes has been recently quantifi...

Freshwater biomonitoring is essential for aquatic biodiversity conservation. Advances in high-throughput sequencing allowed parallel sequencing of community samples containing DNA from environmental samples, i.e., metabarcoding. Two approaches of DNA-based method are widely used, bulk-sample metabarcoding the use of bulk tissues such as insects and...

Stream ecosystems are spatially heterogeneous, with many different habitat patches distributed within a small area. The influence of this heterogeneity on the biodiversity of benthic insect communities is well documented; however, studies of the role of habitat heterogeneity in species coexistence and assembly remain limited. Here, we investigated...

Correctly identifying target insect pests and their natural enemies is important in biological control management programs. In the scale insect outbreak that devastated the coconut industry of the Philippines in 2009, the misidentification of the destructive pest population resulted in an unsuccessful biological control application. The scale cover...

The studies of microbial communities have drawn increased attention in various research fields such as agriculture, environment, and human health. Recently, metaproteomics has become a powerful tool to interpret the roles of the community members by investigating the expressed proteins of the microbes. However, analyzing the metaproteomic data sets...

Microbial communities in the hyporheic zone (HZ) are important in self-purification as the riverbed is metabolically active and responsible for the retention, storage and mineralisation of organic matter transported to the surface water. However, studies exploring HZ microbial community responses to disturbances (e.g. floods) remain scarce. Here, w...

Helopeltis bakeri Poppius is a major insect pest of cacao, Theobroma cacao L. in the Philippines. It is one of the four Helopeltis species endemic to the Philippines, easily recognizable for its sexual dimorphism. Up to date, no developmental biology and host plant list have been recorded for H. bakeri. Here, we report its life history, conduct sur...

Background: Sequential membrane filtration as a pre-processing step for capturing sediment-associated microorganisms could provide good quality and integrity DNA that can be preserved and kept at ambient temperatures before community profiling through culture-independent molecular techniques. However, the effects of sample pre-processing via filtra...

The development and evaluation of DNA metabarcoding protocols for haplotype-level resolution require attention, specifically for population genetic analysis, i.e., parallel estimation of genetic diversity and dispersal patterns among multiple species present in a bulk sample. Further exploration and assessment of the laboratory and bioinformatics s...

The development and evaluation of DNA metabarcoding protocols for haplotype-level resolution require attention, specifically for population genetic analysis, i.e., parallel estimation of genetic diversity and dispersal patterns among multiple species present in a bulk sample. Further exploration and assessment of the laboratory and bioinformatics s...

Exploring and clearly defining the level of taxonomic identification and quantification approaches for diversity and biomonitoring studies are essential, given its potential influence on the assessment and interpretation of ecological outcomes. In this study, we evaluated the response of benthic macroinvertebrate communities to the restoration or c...

DNA metabarcoding is a robust method for environmental impact assessments of freshwater ecosystems that enables the simultaneous multi-species identification of complex mixed community samples from different origins using extracellular and total genomic DNA. The development and evaluation of DNA metabarcoding protocols for haplotype level resolutio...

Sequential membrane filtration as a pre-processing step for the isolation of microorganisms could provide good quality and integrity DNA that can be preserved and kept at ambient temperatures before community profiling through culture-independent molecular techniques, e.g., 16s rDNA amplicon sequencing. Here, we assessed the impact of pre-processin...

Background: River restoration efforts are expected to influence and change the diversity and functions of microbial communities following the recovery of habitat characteristics in the river ecosystem. The recreation or restoration of gravel bars in the Trinity River in California aims to rehabilitate the environmental heterogeneity downstream of t...

Despite the fact that massive outbreaks of the coconut scale insect pest, Aspidiotus rigidus Reyne (Hemiptera: Diaspididae) are inflicting significant economic losses to the Philippines' coconut industry, little is known about the population and dispersal history of this invasive pest in the country. Here, we examined the genetic diversity, structu...

Stream ecosystems are spatially heterogeneous, with many different habitat patches distributed within a small area. The influence of this heterogeneity on the biodiversity of benthic insect communities is well documented; however, studies of the role of habitat heterogeneity in species coexistence and community assembly remain limited. Here, we ask...

The Philippines suffered from a devastating outbreak of the coconut scale insect pest, Aspidiotus rigidus Reyne inflicting significant economic losses to the country’s coconut industry. Despite the massive outbreak, little is known about the population and dispersal history of this invasive pest in the Philippines. Here, we examined the genetic div...

Conventional morphology-based identification is commonly used for routine assessment of freshwater ecosystems. However, cost and time efficient techniques such as high-throughput sequencing (HTS) based approaches may resolve the constraints encountered in conducting morphology-based surveys. Here, we characterized stream macroinvertebrate species d...

Gravel bars play important ecological roles in rivers, specifically in retaining organic matter filtered from surface waters making it available for utilization by stream biota as energy resources with consequent benefits to water quality and the self-purification capacity of the river. Nutrient cycling and organic matter transformation within the...

Supplemental Information - Ecological influence of sediment bypass tunnels on macroinvertebrates in dam-fragmented rivers by DNA metabarcoding

The Philippines faced a devastating coconut scale insect (CSI) outbreak damaging 2.7 million coconut palms in the provinces of Batangas, Cavite, Laguna, and Quezon from 2009 to 2014, and in Basilan and Zamboanga until recently. The invasive CSI species was initially identified as Aspidiotus destructor Signoret, but further morphological analysis po...

Four species of Helopeltis Signoret have been reported in the Philippines, among which H. bakeri Poppius has most recently been identified as a major pest of Theobroma cacao in Luzon. This particular mirid species prefers to feed and oviposit on cacao pods, causing characteristic feeding lesions through which pathogens such as Phytophthora spp can...

Correct identification of both the target insect pests and their natural enemies is important in biological control pest management programs. In the recent coconut scale insect (CSI) outbreak in the Philippines, misidentification of the destructive pest population resulted to an unsuccessful biological control application reaching epidemic status....