João M. Neto

João M. Neto
University of Coimbra | UC · Department of Life Sciences; Faculty of Science and Technology

Ph.D.

About

143
Publications
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6,182
Citations

Publications

Publications (143)
Article
Full-text available
Salt marshes play a critical role in supporting water quality, erosion control, flood protection, and carbon sequestration. Threats from climate change and human activities have prompted global restoration initiatives. We analyzed restoration efforts worldwide from 1978 to 2022, using the Web of Science database and SciMAT mapping tool. After a PRI...
Article
Full-text available
Tidal marshes store large amounts of organic carbon in their soils. Field data quantifying soil organic carbon (SOC) stocks provide an important resource for researchers, natural resource managers, and policy-makers working towards the protection, restoration, and valuation of these ecosystems. We collated a global dataset of tidal marsh soil organ...
Article
The implementation of climate change mitigation strategies based on the conservation and restoration of Blue Carbon ecosystems requires a deep understanding of the magnitude and variability in organic carbon (Corg) storage across and within these ecosystems. This study explored the variability in soil Corg stocks and burial rates across and within...
Article
The Water Framework Directive (WFD) aims to attain ‘good quality’ status for all European water bodies through the achievement of good ecological status. To this purpose, the WFD advocates the creation of cost-effective monitoring tools to deliver appropriate data that help to create links between chemical and ecological indicators, as those from e...
Article
Despite the growing use and potential of DNA metabarcoding to improve and expedite macrozoobenthos monitoring, its employment in Water Framework Directive (WFD) monitoring of transitional ecosystems still remains largely unexplored. In the current study, we addressed this research gap by building upon the biomonitoring network program of the Portug...
Preprint
Full-text available
Despite the growing use and potential of DNA metabarcoding to improve and expedite macrozoobenthos monitoring, its employment in Water Framework Directive (WFD) monitoring of transitional ecosystems still remains largely unexplored and pending proof-of-concept studies. In the current study, we addressed this research gap by building upon the biomon...
Article
Full-text available
Biological invasions represent a threat to ecosystems, through competition and habitat destruction, which may result in significant changes of the invaded community. Asparagopsis armata Harvey 1855 is a red macroalgae (Rodophyta) globally recognized as an invasive species. It is found from the intertidal to shallow subtidal areas, on rock or epiphy...
Article
Full-text available
Bivalves are widely distributed through diverse habitats, including estuaries and coastal lagoons which are extremely productive ecosystems, and play important roles in trophic webs and in ecosystems’ biological processes. Bivalves, as well as other marine resources, have been a part of the humans’ diet since mankind started fishing. These resource...
Article
Invasive macroalgae represent one of the major threats to marine biodiversity, ecosystem functioning and structure, as well as being important drivers of ecosystem services depletion. Many such species have become well established along the west coast of the Iberian Peninsula. However, the lack of information about the distribution of the invaders...
Article
Full-text available
We analysed the relationship between functional and structural variables (leaf litter decomposition, biofilms growth, primary productivity, invertebrate communities’ taxonomic structure, and biological traits) and environmental conditions from headwaters into the estuary, which remains under-investigated. Six river sections (headwaters, middle reac...
Article
Full-text available
The introduction of exotic organisms in marine ecosystems can lead to economic and ecological losses. Globally, seaweeds represent a significant part of these non-indigenous species (NIS), with 407 introduced algal species. Furthermore, the presence of NIS seaweeds has been reported as a major concern worldwide since the patterns of their potential...
Preprint
Full-text available
Biological invasions represent a threat to ecosystems, through competition and habitat destruction, which may result in significant changes of the invaded community. Asparagopsis armata is a red macroalgae (Rodophyta) globally recognized as an invasive species. It is found from the intertidal to shallow subtidal areas, on rock or epiphytic, forming...
Poster
Marine bivalves are distributed worldwide through diverse habitats, including estuaries andcoastal lagoons, and play important roles in the trophic webs, as they can connect primary producers to consumers, and are able to control several ecosystem’ processes, like the oxygen penetration in the sediments. As well as other seafood, bivalves are highl...
Chapter
Full-text available
Os estuários são corpos de água costeiros que se encontram na zona de confluência do rio com o mar, onde a salinidade se dilui gradualmente mas onde as oscilações ambientais diárias podem variar de forma bastante drástica. São áreas muito produtivas mas onde, por serem de transição entre aqueles ambientes aquáticos, apenas um número restrito de esp...
Article
The present study aims to examine physiological and biochemical response of three commercial fish species (Dicentrarchus labrax; Platichthys flesus and Solea solea), over contrasting environmental dynamics: an extremely dry (2012) and flood (2014) years, in a shallow temperate southern European estuary, the Mondego Estuary (Portugal). Physiological...
Article
Microplastic ingestion has been reported for several marine species, but the level of contamination in transitional systems and associated biota is less known. The aim of this study was to assess the occurrence of microplastic ingestion in three commercial fish species: the sea bass (Dicentrarchus labrax), the seabream (Diplodus vulgaris) and the f...
Article
Macroalgae are unavoidable biological elements when monitoring and assessing costal environments. However, these tasks can be difficult to address because macroalgae a) present a high natural variability across a range of spatial and temporal scales, b) they imply a high sampling and laboratory processing effort and good taxonomical expertise (as t...
Article
This paper reviews and discusses the methods and metrics used for the assessment of the ecological status of marine angiosperms comparing the European with the South African situation. In Europe salt marsh and seagrasses are an important biological element for establishing the ecological quality status of transitional waters and in South Africa cha...
Chapter
Full-text available
This work studied the marine macroalgae thriving at intertidal rocky shores on the west coast of Portugal (Peniche, Central Portugal). Four seashores (Baleal-Norte, Gamboa, Portinho da Areia do Norte and Consolação) located near the borderline between two adjacent types of the Portuguese coast were surveyed, the first 3 inside the northern exposed...
Article
Full-text available
A gap in the European Water Framework Directive (WFD) is addressed, aiming for the development of an ecological quality status assessment tool based solely on the Biological Quality Element benthic macroinvertebrates from intertidal rocky shores. The proposed Rocky shore Macroinvertebrates Assessment Tool (RMAT) was tested and validated along distu...
Article
Full-text available
This study highlights the effect that estuarine polluted waters may have on adjacent coastal waters and the need of an integrated management of the coastal area. Pollution of land-to-sea water plumes varies spatially and temporally, being difficult, costly and time consuming to determine. However, the reduction in water quality of both estuarine an...
Article
Full-text available
The utility and concordance of application of taxonomic-based (diversity, richness and composition) and functional-based (biological traits analysis and functional diversity indices) metrics to distinguish anthropogenic disturbance or stress gradients (e.g., nutrient enrichment) on intertidal rocky shores were explored using macroinvertebrate commu...
Article
Full-text available
The Marine Strategy Framework Directive requires the environmental status of European marine waters to be assessed using biodiversity as 1 out of 11 descriptors, but the complexity of marine biodiversity and its large span across latitudinal and salinity gradients have been a challenge to the scientific community aiming to produce approaches for in...
Article
The implementation of directives such as the European Water Framework Directive (WFD) and the Marine Strategy Framework Directive (MSFD) has promoted the development of several tools and methods for assessing the ecological health of marine ecosystems. Within the scope of the WFD and in terms of rocky shores, several multimetric tools were develope...
Article
Over the years, the Mondego estuary has undergone various anthropogenic impacts. One of the most serious was the closing of the communication between the two arms of the system (north and south), in the 1990s, which promoted eutrophication and a consequent water quality decline in the south arm. Several mitigation measures were subsequently impleme...
Article
The implementation of directives such as the European Water Framework Directive (WFD) and the Marine Strategy Framework Directive (MSFD) has promoted the development of several tools and methods for assessing the ecological health of marine ecosystems. Within the scope of the WFD and in terms of rocky shores, several multimetric tools were develope...
Preprint
Full-text available
The increasing development of aquaculture activity in the coast of Sagres, area included in the Parque Natural do Sudoeste Alentejano e Costa Vicentina (PNSACV) SW Portugal, has to comply with regional and national regulations. The development also has to comply with EU directives including: Quality of Shellfish Waters Directive 2006/113/EC (QSWD);...
Preprint
Full-text available
The increasing development of aquaculture activity in the coast of Sagres, area included in the Parque Natural do Sudoeste Alentejano e Costa Vicentina (PNSACV) SW Portugal, has to comply with regional and national regulations. The development also has to comply with EU directives including: Quality of Shellfish Waters Directive 2006/113/EC (QSWD);...
Article
Full-text available
Assessing the environmental status of marine ecosystems is useful when communicating key messages to policymakers or the society, reducing the complex information of the multiple ecosystem and biodiversity components and their important spatial and temporal variability into manageable units. Taking into account the ecosystem components to be addres...
Article
A methodology to classify rocky shores along the North East Atlantic (NEA) region was developed. Previously, biotypes and the variability of environmental conditions within these were recognized based on abiotic data. A biological validation was required in order to support the ecological meaning of the physical typologies obtained. A database of i...
Conference Paper
Full-text available
The implementation of the Water Framework Directive heralded a new way of assessing the status of waters across the European Union. Biological assessment methods are now used along with more traditional environmental quality parameters to provide a holistic overview of the ecology of our water bodies. For transitional and coastal waters in the Nort...
Article
Full-text available
The south arm of Mondego estuary, located in the central western Atlantic coast of Portugal, is stressing by an eutrophication process due to massive nutrient loading from urbanised areas and diffusive runoff from intensively agricultural areas. The consequence is a structural change of the ecosystem, where the turnover of oxygen and nutrients is m...
Article
Full-text available
The freshwater–saltwater-transition-zone was analysed using two different sampling protocols and assessment methodologies, developed for freshwater and estuaries, to compare their agreement level in terms of community composition and quality assessments. The use of different protocols resulted in significant differences in macroinvertebrate communi...
Article
Full-text available
Abstract Assessing the environmental status of marine ecosystems is useful when communicating key messages to policymakers or the society, reducing the complex information of the multiple ecosystem and biodiversity components and their important spatial and temporal variability into manageable units. Taking into account the ecosystem components to...
Chapter
Worldwide, increase of human pressures and consequent degradation of the ecological quality of aquatic systems have been contributing to the awareness that the integrity of marine ecosystems is under threat (e.g., Crain et al. 2009) and hence, in decline from earlier natural or pristine conditions. In this context, the idea of a ʼnatural’ or ‘pristi...
Article
The impact of three dominating benthic invertebrates on sediment stability and erosion conditions of cohesive sediments in the Mondego Estuary, Portugal, was examined in laboratory annular flume experiments. The purpose was to test how the life habits and body size of the three involved species (Hydrobia ulvae, Nereis diversicolor and Scrobicularia...
Article
The freshwater-saltwater-transition-zone was analysed using two different sampling protocols and assessment methodologies, developed for freshwater and estuaries, to compare their agreement level in terms of community composition and quality assessments. The use of different protocols resulted in significant differences in macroinvertebrate communi...
Article
The European Marine Strategy Framework Directive (MSFD) requires EU Member States (MS) to achieve Good Environmental Status (GEnS) of their seas by 2020. We address the question of what GEnS entails especially with regard to the level at which targets are set (descriptors, criteria, indicators), to scales for assessments (regional, sub-divisions, s...
Article
Full-text available
From 2003 to 2008, research on spatial and temporal dynamics of Corbicula fluminea was conducted at 10 sites along the Mondego Estuary (Portugal). A clear spatial and temporal variation in terms of density and biomass was observed, the highest values being found in the upstream oligohaline site, especially in warmer seasons. Seasonal density ranged...
Article
allow improvement of the N removal capacity of treat- ment wetlands. Improved understanding of the importance of different surfaces than on the twigs and 40 times higher than on Eurasian watermilfoil. The distribution of denitrifying bacteria was most likely due to the Studies of N removal processes in freshwater systems availability of organic mat...
Article
Full-text available
The ecological status classification of aquatic ecosystems using biological indices requires a number of steps, including the description and standardisation of the indices’ natural variability. Here, we address this point with reference to selected Mediterranean and Black Sea lagoons, using benthic macroinvertebrates in order to: (i) explore the d...
Article
Full-text available
Identifying and quantifying the factors that contribute to the potential misclassification of the ecological status of water bodies is a major challenge of the Water Framework Directive (WFD). The present study compiles extensive biomonitoring data from a range of macrophyte-based classification methods developed by several European countries. The...
Article
Full-text available
Seagrasses are key components of coastal marine ecosystems and many monitoring programmes worldwide assess seagrass health and apply seagrasses as indicators of environmental status. This study aims at identifying the diversity and characteristics of seagrass indicators in use within and across European ecoregions in order to provide an overview of...
Article
Framework Directive requirements in terms of compliance (e.g., metrics, sampling procedure, pressure relationship, uncertainty of misclassification and comparability to other methodologies in terms of con- cept). The index includes three common and easy-to-measure structural parameters of seagrass (i.e., the no. of taxa, bed extent and shoot densit...
Article
a b s t r a c t The main goal of this study was to evaluate the response of intertidal macrobenthic communities asso-ciated with Zostera noltii meadows in a temperate estuary (Mondego, Portugal) to the application of mitigation measures aimed at decreasing eutrophication symptoms. In order to assess possible ecologi-cal improvements regarding the s...
Article
Full-text available
Estuaries and lagoons are especially affected by anthropogenic pressures. This has resulted in symptoms of degradation including water quality impairment and loss of aquatic biota. Protection of aquatic biodiversity and management of these coastal systems require robust tools to assess habitat integrity. Fish populations have been extensively used...
Article
According to the Water Framework Directive (WFD) transitional waters should be differentiated according to type and, in some cases, divided into different water bodies. This raises a dilemma in trying to define parts of a continuum. In the sequence of WFD several indices have been proposed including the Estuarine Fish Assessment Index, which can be...