Jin-Min Pan- PhD Student at Sun Yat-sen University
Jin-Min Pan
- PhD Student at Sun Yat-sen University
PhD Student at Sun Yat-sen University(SYSU).
About
15
Publications
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Introduction
Skills and Expertise
Current institution
Additional affiliations
September 2021 - December 2021
December 2021 - June 2024
September 2016 - June 2020
Publications
Publications (15)
Galectins exhibit a variety of biological functions through interactions with their ligands, including galactose and its derivatives. Tandem-repeat galectins, such as Galectin-8, can act as pattern recognition receptors to aggregate and neutralize bacterial pathogens. In this study, Galectin-8 was identified in Trachinotus ovatus (golden pompano)....
尖翅燕鱼 (Platax teira) 具有生长速度快、肉质鲜美、营养价值高等特点，其外形奇特，尤其幼鱼更为特殊，可作为观赏鱼，是南海发展网箱养殖的重要潜力鱼类之一。由于目前缺乏尖翅燕鱼的基因组信息，其多数功能基因未被挖掘，已成为制约其遗传育种的重要因素。运用三代测序技术和组装获得染色体水平的尖翅燕鱼高质量基因组图谱，通过基因组注释获得尖翅燕鱼基因组序列的基本生物学信息。结果显示，尖翅燕鱼基因组大小为697.98 Mb，Hi-C挂载至24条染色体，挂载率为99.26%，含重复序列177.79 Mb，占整个基因组的25.47%，注释到22 851个蛋白编码基因。系统进化分析显示尖翅燕鱼与波纹唇鱼 (Cheilinus undulatus) 亲缘关系最近，分化时间距今约82.89 Ma。正选择基...
Seabream is one of most important candidates for aquaculture in China. However, in recent years, streptococcosis has posed a serious challenge. Galectin-8 has been proven to play an important role in the antibacterial immunity of teleost. In this study, Acanthopagrus latus Galectin-8 (AlGal-8) was characterized for the first time consisting of 8 ex...
Galectins (Gals) are a type of S-type lectin that are widespread and evolutionarily conserved among metazoans, and can act as pattern recognition receptors (PRRs) to recognize pathogen-associated molecular patterns (PAMPs). In this study, 10 Gals (ToGals) were identified in the Golden pompano (Trachinotus ovatus), and their conserved domains, motif...
Scarus forsteni, a whitespot parrotfish from the Scaridae family, is a herbivorous fish inhabiting coral reef ecosystems. The deterioration of coral reefs has highly affected the habitats of the parrotfish. The decline in genetic diversity of parrotfish emphasizes the critical importance of conserving their genetic variability to ensure the resilie...
In this study, we developed an optimized cryopreservation protocol for goldlined seabream sperm through five small experimental groups: Diluting the sperm with a mixed cryoprotectant (containing 10 g/L glucose and 10% DMSO in an RS extender) at a ratio of 1:3, followed by equilibration at 4 °C for 30 min. Subsequently, the samples were subjected to...
Golden pompano, Trachinotus ovatus, as a highly nutritious commercially valuable marine fish, has become one of the preferred species for many fish farmers due to its rapid growth, wide adaptability, and ease of feeding and management. However, with the expansion of aquaculture scale, bacterial and parasitic diseases have also become major threats...
In recent years, biotechnology has had a significant impact on the aquaculture industry, particularly in the field of breeding. Molecular selection breeding has emerged as a novel approach to breeding. Reducing the cost of genetic information for individuals with desirable traits after breeding has become an important research direction. Cryopreser...
The MMPs are endogenous proteolytic enzymes that require zinc and calcium as cofactors. MMP9 is one of the most complex matrix metalloproteinases in the gelatinase family and has many biological functions. In mammals, mmp9 is thought to be closely associated with cancer. However, studies in fish have rarely been reported. In this study, to understa...
Questions
Question (1)
Dear colleagues,
I am currently conducting research on a fish transposon library. I constructed a transposon library from a fish genome using the EDTAand have been performing subsequent analysis on the DTA-class transposons. My objective is to investigate the transposition activity of a particular DTA transposon, with plans to validate its functionality through wet lab experiments.
However, my preliminary analysis revealed that this DTA transposon does not contain a detectable transposase coding sequence, which has impacted further functional studies. Therefore, I am seeking a software tool or method that can more accurately identify DNA transposons possessing both terminal inverted repeats (TIRs) and transposase sequences, ensuring that the candidate transposons have autonomous transposition capability. Ideally, the output should include a consensus sequence library and annotation files to provide a reliable basis for subsequent wet lab experiments.
Any recommendations or suggestions would be greatly appreciated. Thank you very much for your assistance.
Pan Jin-Min
