Jeff Bowman

Jeff Bowman
Ontario Ministry of Natural Resources

BSc, MSc, PhD

About

211
Publications
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Publications

Publications (211)
Article
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The ability to identify regions of high functional connectivity for multiple wildlife species is of conservation interest with respect to habitat management and corridor planning. We present a method that does not require independent, field‐collected data, is insensitive to the placement of source and destination sites (nodes) for modeling connecti...
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Theoretical models predict strong influences of habitat loss and fragmentation on species distributions and demography, but empirical studies have shown relatively inconsistent support across species and systems. We argue that species’ responses to landscape-scale habitat loss and fragmentation are likely to appear less idiosyncratic if it is recog...
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There is now unequivocal evidence for global climate change; however, its potential impacts on evolutionary processes remain unclear. Many species have responded to contemporary climate change through shifts in their geographic range. This could lead to increased sympatry between recently diverged species; likely increasing the potential for hybrid...
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We tested the prediction that home range area and dispersal distance in mammals are related when considered independently of body size. Regression of log-transformed data demonstrated that more variance in maximum dispersal distance could be explained by home range area (74%) than could be explained by body size (50%). The relationship between maxi...
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Recent assertions in the literature (e.g., Keller et al. 2015) suggest that landscape genetic research has been infrequently applied by practitioners. We were interested to test this assertion, which is difficult to assess, since applications may not be detectable through searches of peer-reviewed literature. Producing publications may not be a goa...
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Maintaining and restoring ecological connectivity will be key in helping to prevent and reverse the loss of biodiversity. Fortunately, a growing body of research conducted over the last few decades has advanced our understanding of connectivity science, which will help inform evidence‐based connectivity conservation actions. Increases in data avail...
Preprint
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Male and female rodents experience different selective pressures associated with reproductive costs. Thus, we may expect the expression of different Pace-of-life (POL) strategies between sexes. Further, the pace-of-life syndrome (POLS) hypothesis and anisogamy predict differences in the costs of gamete production, where variation in life history tr...
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One Health is an integrated approach that aims to balance and optimize the interconnectedness of the health of humans, animals, and ecosystems. Using this transdisciplinary approach, experts from across Canada led the formation of the Wildlife Emerging Pathogens Initiative (Wild EPI) to undertake research and surveillance programs evaluating the po...
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Funding is critical in ecology and related fields, as it enables research and sustains livelihoods. However, early-career researchers (ECRs) from diverse backgrounds are disproportionately underrepresented as funding recipients. To help funding programs self-evaluate progress towards increasing equity, diversity, and inclusion (EDI) in their fundin...
Article
Wetlands in southern Ontario are at risk of degradation and alteration due to human activities. This is a concern because wetlands provide essential habitat for species from a range of taxa, such as birds and anurans (frogs and toads). One wetland-dwelling species whose decline may be linked to loss of wetland wildlife habitat is the muskrat (Ondat...
Article
Gliding is only present in six extant groups of mammals—interestingly, despite divergent evolutionary histories, all mammalian gliders are strictly nocturnal. Gliding mammals also seem to have relatively high rates of ultrasound use and ultraviolet-induced photoluminescence (UVP) in contrast with their close relatives. Therefore, we hypothesized th...
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The muskrat (Ondatra zibethicus) is considered a ubiquitous inhabitant of wetlands across Canada and the United States, but recent studies indicate that muskrat populations in many parts of North America have experienced substantial declines over the last 40–60 years. Monitoring of muskrat abundance is therefore an important task for wildlife manag...
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Grassland alvar is a rare plant community that occurs throughout North America and northern Europe, and may require control of encroaching vegetation to be maintained or restored. We evaluated the hypothesis that restoration techniques used to restore the alvar ecosystem do not lead to declines in small mammal abundance. More specifically, we used...
Article
Most environments exhibit predictable yearly changes, permitting animals to anticipate them. The hypothalamic–pituitary–adrenal (HPA) axis is a key physiological pathway that enables animals to cope with such changes. Monitoring glucocorticoid (the end products of the HPA axis) levels in wild animals throughout the year can improve our understandin...
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Context Nest or roost sites are important for social thermoregulators – not only because the locations provide shelter from harsh climates, but also because they provide sites for social aggregations. Nest use can therefore be informative about selection pressures facing social thermoregulators. Aims The aim of this study was to assess seasonal cha...
Preprint
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There has been an increasing interest in modelling the influence of animal personality on species interactions within ecosystems. Animal personality traits associated with dispersal, movement within a home range and risk-taking, including docility and exploration, have been shown to influence an array of environmental variables including seed dispe...
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Wild turkeys Meleagris gallopavo are diurnally active birds that spend the dark hours roosting in trees. We tested the hypothesis that multiple benefits exist for roost tree selection by wild turkeys, including thermoregulation, resource acquisition, and protection from predators. We compared 48 roost trees used by eastern wild turkeys M. g. silves...
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It has been recognized that well-connected networks of protected areas are needed to halt the continued loss of global biodiversity. The recently signed Kunming-Montreal biodiversity agreement commits countries to protecting 30% of terrestrial lands in well-connected networks of protected areas by 2030. To meet these ambitious targets, land-use pla...
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White-tailed deer (WTD) are susceptible to SARS-CoV-2 and represent an increasingly important species for surveillance. Samples from WTD (n=258) collected in November 2021 from Québec, Canada were analyzed for SARS-CoV-2 RNA. We employed viral genomics and host transcriptomics to further characterize infection and investigate host response. We dete...
Preprint
Muskrat (Ondatra zibethicus) populations have been declining in North America for decades. The precise cause of these widespread declines has not yet been identified. Over a similar timeframe, wetlands across large regions of North America have been experiencing an invasion of cattails (Typha). Non-native T. angustifolia readily hybridizes with nat...
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Secondary contact of closely related species may lead to hybridization if reproductive isolation is incomplete. We examined the role of habitat use as a factor contributing to reproductive isolation of northern (Glaucomys sabrinus (Shaw, 1801)) and southern (Glaucomys volans (Linnaeus, 1758)) flying squirrels in an area of secondary contact in Onta...
Preprint
Full-text available
Wetlands in southern Ontario are at risk of degradation and alteration due to human activities. This is a concern because wetlands provide essential habitat for species from a range of taxa, such as birds and anurans (frogs and toads). One wetland-dwelling species whose decline may be linked to loss of wetland wildlife habitat is the muskrat ( Onda...
Article
Full-text available
Caribou (Rangifer tarandus) have experienced dramatic declines in both range and population size across Canada over the past century. Boreal caribou (R. t. caribou), 1 of the 12 Designatable Units, has lost approximately half of its historic range in the last 150 years, particularly along the southern edge of its distribution. Despite this overall...
Article
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Understanding the distribution and abundance of species is a fundamental aspect of conservation biology. Species distribution models aim to predict distributions based on species observations and ecologically relevant information. To understand the contemporary distribution of Wild Turkeys (Meleagris gallopavo) in Ontario, we curated and collated W...
Preprint
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Invasive Phragmites australis subsp. australis is invading Great Lakes coastal wetlands and forming monocultures at an alarming rate. P. australis is thought to reduce wetland biodiversity both directly and indirectly through the acquisition of resources and alteration of habitat. Restoration efforts to manually remove P. australis at Point Pelee N...
Preprint
Secondary contact of closely related species may lead to hybridization if reproductive isolation is incomplete. Selection against hybrids may become reinforced if hybrid fitness is low. This can be evident from the divergence of isolating traits. We examined habitat use of northern (Glaucomys sabrinus (Shaw, 1801)) and southern (Glaucomys volans (L...
Preprint
It has been recognized that well-connected networks of protected areas are needed to halt the continued loss of global biodiversity. The recently signed Kunming-Montreal biodiversity agreement commits countries to protecting 30% of terrestrial lands in well-connected networks of protected areas by 2030. To meet these ambitious targets, land-use pla...
Article
Full-text available
Governments around the world have acknowledged that urgent action is needed to conserve and restore ecological connectivity to help reverse the decline of biodiversity. In this study we tested the hypothesis that functional connectivity for multiple species can be estimated across Canada using a single, upstream connectivity model. We developed a m...
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Actions to protect against biodiversity loss and climate change will require a framework that addresses synergies between these interrelated issues. In this study, we present methods for identifying areas important for the implementation of nature-based climate solutions and biodiversity conservation by intersecting high-resolution spatial data for...
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Wildlife reservoirs of broad-host-range viruses have the potential to enable evolution of viral variants that can emerge to infect humans. In North America, there is phylogenomic evidence of continual transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) from humans to white-tailed deer (Odocoileus virginianus) through unknow...
Preprint
Actions to protect against biodiversity loss and climate change will require a framework that addresses synergies between these interrelated issues. In this study we present methods for identifying areas important for the implementation of nature-based climate solutions and biodiversity conservation by intersecting high resolution spatial data for...
Article
Full-text available
Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus responsible for the coronavirus disease 2019 pandemic, is capable of infecting a variety of wildlife species. Wildlife living in close contact with humans are at an increased risk of SARS-CoV-2 exposure and, if infected, have the potential to become a reservoir for...
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Purpose The rapid emergence and spread of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has sparked concerns of spillover to naïve wildlife populations and it is unclear if wildlife could ultimately serve as a reservoir for the virus. Evidence of SARS-CoV-2 has been detected in captive and wild animals (e.g., mink, tiger, lion). More...
Preprint
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Wildlife reservoirs of SARS-CoV-2 can lead to viral adaptation and spillback from wildlife to humans (Oude Munnink et al., 2021). In North America, there is evidence of spillover of SARS-CoV-2 from humans to white-tailed deer ( Odocoileus virginianus ), but no evidence of transmission from deer to humans (Hale et al., 2021; Kotwa et al., 2022; Kuch...
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While an array of taxa are capable of producing fluorescent pigments, fluorescence in mammals is a novel and poorly understood phenomenon. A first step towards understanding the potential adaptive functions of fluorescence in mammals is to develop an understanding of fluorescent compounds, or fluorophores, that are present in fluorescent tissue. He...
Preprint
Full-text available
White-tailed deer are susceptible to SARS-CoV-2 and represent a relevant species for surveillance. We investigated SARS-CoV-2 infection in white-tailed deer in Québec, Canada. In November 2021, 251 nasal swabs and 104 retropharyngeal lymph nodes from 258 deer were analyzed for SARS-CoV-2 RNA, whole genome sequencing and virus isolation and 251 thor...
Preprint
Full-text available
Governments around the world have acknowledged the importance of conserving ecological connectivity to help reverse the decline of biodiversity. In this study we employed recent methodological developments in circuit theory to conduct the first pan-Canadian analysis of multi-species connectivity for all terrestrial regions of the country, at a spat...
Preprint
Full-text available
Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus responsible for the COVID-19 pandemic, is capable of infecting a variety of wildlife species. Wildlife living in close contact with humans are at an increased risk of SARS-CoV-2 exposure and if infected have the potential to become a reservoir for the pathogen, maki...
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Competition is a driving factor in shaping ecological communities and may act directly or indirectly through apparent competition. We examined a classic example of parasite-mediated competition between northern (Glaucomys sabrinus) and southern flying squirrels (G. volans) via the intestinal nematode, Strongyloides robustus, and tested whether it c...
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Northern (Glaucomys sabrinus) and southern (Glaucomys volans) flying squirrels are widespread species distributed across North America. Northern flying squirrels are common inhabitants of the boreal forest, also occurring in coniferous forest remnants farther south, whereas the southern flying squirrel range is centered in eastern temperate woodlan...
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Harvest management quotas for fishers Pekania pennanti in some jurisdictions are estimated from the previous year's harvest, and stem from the hypothesis that age ratios in the harvest are largely influenced by ‘top–down’ trapping pressure. The influence of ‘bottom–up’ food supply on fisher harvest age ratios might be underappreciated, which could...
Preprint
Full-text available
While an array of taxa are capable of producing fluorescent pigments, fluorescence in mammals is a novel and poorly understood phenomenon. We believe that a first step towards understanding the potential adaptive functions of fluorescence in mammals is to develop an understanding of fluorescent compounds, or fluorophores, that are present in fluore...
Article
Shifting range boundaries can lead to secondary contact of closely related species, which might in turn lead to hybridization when the evolution of reproductive isolation is incomplete. We examined winter nest use of northern (Glaucomys sabrinus Shaw, 1801) and southern flying squirrels (G. volans Linnaeus, 1758) in an area of recent secondary cont...
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We report the first functionally-annotated de novo transcriptome assembly for North American flying squirrels (genus Glaucomys). RNA was extracted from tissue samples obtained from two northern flying squirrels and two southern flying squirrels sampled from Ontario, Canada, and sequenced on an Illumina paired-end sequencing platform. We reconstruct...
Preprint
Northern ( Glaucomys sabrinus ) and southern ( Glaucomys volans ) flying squirrels are widespread species distributed across much of North America. Northern flying squirrels are common inhabitants of the boreal forest, also occurring in coniferous forest remnants farther south, whereas the southern flying squirrel range is centered in eastern tempe...
Article
Full-text available
Context Maintaining and improving ecological connectivity is an important component of wildlife conservation. Omnidirectional circuit theory algorithms model the flow of electric current across a resistance grid from all directions, making them particularly useful for modeling connectivity of multiple or widespread species, or when source and desti...
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Abstract The muskrat (Ondatra zibethicus) is an iconic species in Canada, valued for both its fur and its integral role in wetland ecosystems, and widely regarded for its perseverance. However, the resilience of this semiaquatic mammal seems to be in question now as increasing evidence points to widespread population declines. Recent analyses of ha...
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The range of the Canada lynx (Lynx canadensis) has contracted substantially from its historical range. Using harvest records, we found that the southern range of the lynx in Ontario in the late 1940s collapsed and then, in a short period of time, increased to its largest extent in the mid‐1960s when the lynx range spread south of the boreal forest...
Preprint
The muskrat ( Ondatra zibethicus ) is an iconic species in Canada, valued for both its fur and its integral role in wetland ecosystems, and widely regarded for its perseverance. However, the resilience of this semi-aquatic mammal seems to be in question now as increasing evidence points to widespread population declines. Recent analyses of harvest...
Article
A common response to parasite infestations is increased production of glucocorticoid hormones that regulate immune function. We examined relationships between ectoparasite infestations and fecal corticosterone metabolites (FCM) in deer mice (Peromyscus maniculatus). Furthermore, we experimentally removed fleas to determine if reductions in ectopara...
Preprint
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Small, isolated populations are prone to inbreeding, increasing the proportion of homozygous sites across the genome that can be quantified as runs of homozygosity (ROH). Caribou (Rangifer tarandus) are declining across their range in Canada; thus, understanding the effects of inbreeding on genetic potential is pertinent for conserving small, isola...
Article
Mountain ecotones have the potential to cause multiple patterns in divergence, from simple barrier effects to more fundamental ecological divergence. Most work in mountain ecotones in North America has focused on reinforcement between refugial populations, making prediction of how mountains impact species that are not restricted to separate glacial...
Article
A fundamental assumption of biotelemetry studies is that there are no adverse consequences from the surgical implantation or presence of the acoustic transmitter. In fisheries, most studies have evaluated this assumption over only short time periods (<2 y) in a laboratory setting. Here we compared the survival, growth, and body condition of populat...
Article
Clock genes exhibit substantial control over gene expression and ultimately life-histories using external cues such as photoperiod, and are thus likely to be critical for adaptation to shifting seasonal conditions and novel environments as species redistribute their ranges under climate change. Coding trinucleotide repeats (cTNRs) are found within...
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The Canada lynx (Lynx canadensis) and the bobcat (Lynx rufus) are closely related species with overlap at their range peripheries, but the factors that limit each species and the interactions between them are not well understood. Habitat selection is a hierarchical process, in which selection at higher orders (geographic range, home range) may cons...
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Background Conservation practitioners are often interested in developing land use plans that increase landscape connectivity, which is defined as the degree to which the landscape facilitates or impedes movement among resource patches. Landscape connectivity is often estimated with a cost surface that indicates the varying costs experienced by an o...
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The release of domestic organisms to the wild threatens biodiversity because the introduction of domestic genes through interbreeding can negatively impact wild conspecifics via outbreeding depression. In North America, farmed American mink (Neovison vison) frequently escape captivity, yet the impact of these events on functional genetic diversity...
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Squirrels (Sciuridae) are a diverse group in behavior, morphology, and ecology. This variation is typified by the wide range of vocalizations spanning ground squirrels (Marmotini and Xerini), tree squirrels (Callosciurinae and Sciurini), and flying squirrels (Pteromyini). Squirrels produce calls that range in frequency, modulation, and function, wi...
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Harvest records suggest that the abundance of bobcats (Lynx rufus) has increased and the leading edge of their distribution has spread northward, while the trailing edge of the Canada lynx (Lynx canadensis) range has contracted in Ontario, Canada. There has been a debate about whether these closely related felids might compete in areas of sympatry,...
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Hosts are often infested by multiple parasite species, but it is often unclear whether patterns of parasite co-occurrence are driven by parasite habitat requirements or parasite species interactions. Using data on infestation patterns of ectoparasitic arthropods (fleas, trombiculid mites, cuterebrid botflies) from deer mice (Peromyscus maniculatus)...
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Purpose of Review We asked how the concept of landscape extent is used in conservation planning. To narrow the scope of our review, we focused on four iconic species depicted on Canadian currency: the beaver (Castor canadensis), the caribou (Rangifer tarandus), the common loon (Gavia immer), and the polar bear (Ursus maritimus). Recent Findings La...
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Urbanization and associated environmental changes are causing global declines in vertebrate populations. In general, population declines of the magnitudes now detected should lead to reduced effective population sizes for animals living in proximity to humans and disturbed lands. This is a cause for concern because effective population sizes set th...
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Abstract The Great Lakes and the St. Lawrence River are imposing barriers for wildlife, and the additive effect of urban and agricultural development that dominates the lower Great Lakes region likely further reduces functional connectivity for many terrestrial species. As the climate warms, species will need to track climate across these barriers....