Jayson M Semmens

University of Tasmania · Institute for Marine and Antarctic Studies (IMAS)

Within the set of risk factors that compromise the conservation of marine biodiversity, one of the least understood concerns is the noise produced by human operations at sea and from land. Many aspects of how noise and other forms of energy may impact the natural balance of the oceans are still unstudied. Substantial attention has been devoted in t...

Unifying models have shown that the amount of space used by animals (e.g., activity space, home range) scales allometrically with body mass for terrestrial taxa; however, such relationships are far less clear for marine species. We compiled movement data from 1,596 individuals across 79 taxa collected using a continental passive acoustic telemetry...

Marine organisms normally swim at elevated speeds relative to cruising speeds only during strenuous activity, such as predation or escape. We measured swimming speeds of 29 ram ventilating sharks from 10 species and of three Atlantic bluefin tunas immediately after exhaustive exercise (fighting a capture by hook-and-line) and unexpectedly found all...

Anthropogenic aquatic noise is recognised as an environmental pollutant with the potential to negatively affect marine organisms. Seismic surveys, used to explore subseafloor oil reserves, are a common source of aquatic noise that have garnered attention due to their intense low frequency inputs and their frequent spatial overlap with coastal fishe...

Predatory fishes are a major component of many tropical fisheries, although little is known about their diet and trophic structure, which can hinder effective management. We used stable isotopes d 15 N and d 13 C in conjunction with dietary prey items of five fishes (Lutjanus sebae, Lethrinus punctulatus, Epinephelus areolatus, Epinephelus multinot...

Between 2018 and 2021, AIMS and its partners conducted a large-scale experiment to investigate the effect of exposure to a 3D seismic survey on pearl oysters. In August 2018, ≈11 000 adult wild silverlip pearl oysters (Pinctada maxima) were collected and attached to bottom culture lines to acclimatise for 1 month at a holding lease site, 40 km off...

Field metabolic rate (FMR) is a holistic measure of metabolism representing the routine energy utilization of a species living within a specific ecological context, thus providing insight into its ecology, fitness and resilience to environmental stressors. For animals which cannot be easily observed in the wild, FMR can also be used in concert with...

Marine ecosystems and their associated biodiversity sustain life on Earth and hold intrinsic value. Critical marine ecosystem services include maintenance of global oxygen and carbon cycles, production of food and energy, and sustenance of human wellbeing. However marine ecosystems are swiftly being degraded due to the unsustainable use of marine e...

In the age of the Anthropocene, the ocean has typically been viewed as a sink for pollution. Pollution is varied, ranging from human-made plastics and pharmaceutical compounds, to human-altered abiotic factors, such as sediment and nutrient runoff. As global population, wealth and resource consumption continue to grow, so too does the amount of pot...

Knowledge of the factors shaping the foraging behaviour of species is central to understanding their ecosystem role and predicting their response to environmental variability. To maximise survival and reproduction, foraging strategies must balance the costs and benefits related to energy needed to pursue, manipulate, and consume prey with the nutri...

Consumption is the primary trophic interaction in ecosystems and its accurate estimation is required for reliable ecosystem modeling. When estimating consumption, species’ diets are commonly assumed to be the average of those that occur among habitats, seasons, and life stages which introduces uncertainty and error into consumption rate estimates....

Significance Seismic surveys are used to locate deposits of oil and gas in seabeds throughout the world’s oceans. There are conflicting views on the impact of these surveys on fish fauna and whether they harm commercial catches. To resolve this issue, we conducted an experimental seismic survey and monitored the composition, abundance, behavior, an...

Regional endothermy has evolved several times in marine fishes, and two competing hypotheses are generally proposed to explain the evolutionary drivers behind this trait: thermal niche expansion and elevated cruising speeds. Evidence to support either hypothesis is equivocal, and the ecological advantages conferred by endothermy in fishes remain de...

Delineation of population structure (i.e. stocks) is crucial to successfully manage exploited species and to address conservation concerns for threatened species. Fish migration and associated movements are key mechanisms through which discrete populations mix and are thus important determinants of population structure. Detailed information on fish...

Many sharks and other marine taxa use natal areas to maximize survival of young, meaning such areas are often attributed conservation value. The use of natal areas is often linked to predator avoidance or food resources. However, energetic constraints that may influence dispersal of young and their use of natal areas are poorly understood. We combi...

Inferences regarding animal presence from passive acoustic receiver arrays are driven by the spatial configuration of receivers. Large, dense arrays provide more information, but maintenance of multiple receivers is costly. Configuring acoustic receiver arrays to maximise coverage while minimising cost is therefore paramount. This study used data f...

• The Maugean skate, Zearaja maugeana, is endemic to two isolated western Tasmanian (Australia) estuaries. The species' persistence in one of these estuaries (Bathurst Harbour) is uncertain, while the other estuary (Macquarie Harbour), potentially the remaining stronghold for the species, is an anthropogenically impacted system. • Key life‐history...

COVID-19 restrictions have led to an unprecedented global hiatus in anthropogenic activities, providing a unique opportunity to assess human impact on biological systems. Here, we describe how a national network of acoustic tracking receivers can be leveraged to assess the effects of human activity on animal movement and space use during such globa...

Spatial management through the implementation of marine protected areas is one strategy to limit the extraction of sensitive marine species. Understanding the area used by marine life is thus a key step towards the evaluation of the management framework and efficacy of a protected area. To provide information of the protective coverage of the Galap...

Marine ecosystems and their associated biodiversity sustain life on Earth and hold intrinsic value. Critical marine ecosystem services include maintenance of global oxygen and carbon cycles, production of food and energy, and sustenance of human wellbeing. However marine ecosystems are rapidly declining due to the unsustainable use of marine enviro...

Metabolic rate is intricately linked to the ecology of organisms and can provide a framework to study the behaviour, life history, population dynamics, and trophic impact of a species. Acquiring measures of metabolic rate, however, has proven difficult for large water-breathing animals such as sharks, greatly limiting our understanding of the energ...

Individual body size strongly influences the trophic role of marine organisms and the structure and function of marine ecosystems. Quantifying trophic position-individual body size relationships (trophic allometries) underpins the development of size-structured ecosystem models to predict abundance and the transfer of energy through ecosystems. Tro...

Staotcysts, the mechanosensory organs common to many marine invertebrates, have shown sensitivity to aquatic noise. Previously, rock lobsters (Jasus edwardsii) from a remote site with little exposure to anthropogenic noise incurred persistent damage to the statocyst and righting reflex following exposure to seismic air gun signals. Here, J. edwards...

Extensions of species' geographical distributions, or range extensions, are among the primary ecological responses to climate change in the oceans. Considerable variation across the rates at which species' ranges change with temperature hinders our ability to forecast range extensions based on climate data alone. To better manage the consequences o...

The endangered and range-restricted Maugean skate (Zearaja maugeana) is subjected to large environmental variability coupled with anthropogenic stressors in its endemic habitat, Macquarie Harbour, Tasmania. However, little is known about the basic biology/physiology of this skate, or how it may respond to future environmental challenges predicted f...

In 2018, the Australian Institute of Marine Science (AIMS) and its partners, conducted an experiment to investigate the effect of exposure to a 3D seismic survey on demersal fishes. The experiment involved the use of a commercial seismic vessel equipped with a 2600 cubic inch air-gun array, sailing a racetrack pattern with eight operational (high e...

The effects of anthropogenic aquatic noise on marine invertebrates are poorly understood. We investigated the impact of seismic surveys on the righting reflex and statocyst morphology of the palinurid rock lobster, Jasus edwardsii, using field-based exposure to air gun signals. Following exposure equivalent to a full-scale commercial assay passing...

In comparison to other behaviours, large predators expend relatively large amounts of energy foraging for prey, based on expected high return. Documenting how they manage costs and benefits of feeding is difficult, particularly for marine predators. In July and August of 2004 and 2005, we combined animal-borne video, accelerometry and depth sensors...

Understanding the human dimensions of recreational fisheries is critical to the development of effective fisheries management regulations. This study aimed to characterize Australian shortfin mako shark (Isurus oxyrinchus) anglers in terms of their gear use, perceptions on circle hooks, perceptions on sharks and shark conservation, and attitudes to...

Resource use and conservation objectives can conflict where protected species and commercially fished species occur together. We tested the potential for a previously overfished deep-sea shark (Centrophorus zeehaani) with very low biological productivity to recover in a network of three reserves. An individual-based simulation model was developed a...

• Essential habitats are areas required to support specific functions, such as providing foraging grounds, shelter or used for reproductive purposes. For mobile aquatic species that move throughout numerous components of the seascape, identifying essential habitats within a species' broader distribution range is crucial to understanding their ecolo...

Australia has four stocks of Commercial Scallop. Two are sustainable – the Bass Strait Central Zone Scallop Fishery and the Port Phillip Bay Dive Scallop Fishery. Two are classified as depleted – the Tasmanian Scallop Fishery and Victoria’s Ocean Scallop Fishery.

Some fishes and sea turtles are distinct from ectotherms by having elevated core body temperatures and metabolic rates. Quantifying the energetics and activity of the regionally endothermic species will help us understand how a fundamental biophysical process (i.e. temperature-dependent metabolism) shapes animal ecology; however, such information i...

Effective management of wildlife resources depends on understanding and cooperating with the human users of the resource, particularly as policies may be rejected if user satisfactions are not met. In Australia, recreational anglers can legally target a migratory top predator, the shortfin mako shark Isurus oxyrinchus, which is also a species at ri...

Knowledge about reproductive movements can be of important conservation value for over-exploited species that are vulnerable when moving between and within key reproductive habitats. Lack of knowledge persists around such movements in the overfished school shark Galeorhinus galeus in Australia. Management assumes all pregnant females migrate betwee...

The Maugean skate (Zearaja maugeana) has only been recorded in two remote and isolated estuaries on the west coast of Tasmania, Australia. While the population status in one of these estuaries (Bathurst Harbour) is uncertain, it is likely that Macquarie Harbour now represents the sole remaining habitat for this species. Environmental conditions, in...

Significance We conducted a systematic, high-resolution analysis of bottom trawl fishing footprints for 24 regions on continental shelves and slopes of five continents and New Zealand. The proportion of seabed trawled varied >200-fold among regions (from 0.4 to 80.7% of area to a depth of 1,000 m). Within 18 regions, more than two-thirds of seabed...

Some species may have a larger role than others in the transfer of complex effects of multiple human stressors, such as changes in biomass, through marine food webs. We devised a novel approach to identify such species. We constructed annual interaction-effect networks (IENs) of the simulated changes in biomass between species of the southeastern A...

Knowledge of reproductive movements and sources of recruitment in highly mobile species is important to understand population-level resilience and to manage recovery in populations depleted by human interference. Management of the school shark Galeorhinus galeus (Linnaeus, 1758), a Conservation Dependent species in Australia subject to a national r...

Shifts in species distribution, or 'range shifts', are one of the most commonly documented responses to ocean warming, with important consequences for the function and structure of ecosystems, and for socio-economic activities. Understanding the genetic signatures of range shifts can help build our knowledge of the capacity of species to establish...

Anthropogenic activities are dramatically changing marine ecosystems. Wildlife tourism is one of the fastest growing sectors of the tourism industry and has the potential to modify the natural environment and behaviour of the species it targets. Here, we used a novel method to assess the effects of wildlife tourism on the activity of white sharks (...

Species occupying high trophic positions with a small population size, limited diet and restricted range are vulnerable to extinction. The endangered Maugean skate (Zearaja maugeana) in Macquarie Harbour is potentially threatened by changing benthic environmental conditions (declining dissolved oxygen concentrations and decreased macrofaunal divers...

Understanding how aquatic species respond to extremes of DO and temperature is crucial for determining how they will be affected by climate change, which is predicted to increasingly expose them to levels beyond their optima. In this study we used novel animal-borne DO, temperature and depth sensors to determine the effect of extremes of DO and tem...

Significance Seismic surveys are used around the world as the primary means to explore for oil and gas deposits. Almost nothing is known regarding the impact of these sound signals on marine invertebrates. In this study, the physiological and behavioral effects of exposure on a commercially important bivalve, the scallop, were quantified. Following...

A radio-acoustic positioning system was used to assess the effects of shark cage-diving operators (SCDO) on the fine-scale movements of a non-focal species, the smooth stingray Bathytoshia brevicaudata. The results revealed that the time spent in the array was individually variable, but generally increased when SCDO were present and that the presen...

There is a critical knowledge gap regarding the impacts of seismic air gun signals on the physiology of adult crustaceans. We conducted four controlled field experiments to examine the impact of seismic acoustic signals on spiny lobster, Jasus edwardsii. Seismic air gun exposure suppressed total haemocyte count (THC) for up to 120days post-exposure...

Zooplankton underpin the health and productivity of global marine ecosystems. Here we present evidence that suggests seismic surveys cause significant mortality to zooplankton populations. Seismic surveys are used extensively to explore for petroleum resources using intense, low-frequency, acoustic impulse signals. Experimental air gun signal expos...

1. A good understanding of acoustic coverage and temporal variation relative to environmental conditions is crucial for accurate interpretation of results from acoustic tracking studies and ensuing appropriate management recommendations. 2. In their recent paper, Gjelland & Hedger (Methods in Ecology and Evolution, 2017) suggest that the general de...

Environmental DNA (eDNA) techniques have only recently been applied in the marine environment to detect the presence of marine species. Species-specific primers and probes were designed to detect the eDNA of the endangered Maugean skate (Zearaja maugeana) from as little as 1 L of water collected at depth (10–15 m) in Macquarie Harbour (MH), Tasmani...

Excel spreadsheet containing the raw Real-time PCR (qPCR) data acquired from water samples collected in Macquarie Harbour. The data consists of the eDNA concentration (copies eDNA molecules per micro-liter) acquired from water samples collected in the field at depth at sample sites Table Head (THD) and Liberty Point (LP). Average eDNA concentration...

R program file for running the exponential decay model in R. The file contains the R code used in this study to run the exponential decay model to determine the decay rate of eDNA concentrations over a time period of 72 hours using the data from S1 Data. (R)

Excel spreadsheet containing the raw Real-time PCR (qPCR) data acquired from water samples collected in the exponential decay tank experiments. The data consists of the eDNA concentration (copies eDNA molecules per micro-liter) acquired from water samples taken from two experimental tanks in which Z. maugeana were kept for 48 hours and the removed....

Determining the dynamics of ecological communities following periods of anthropogenic change is critical to assessing the effectiveness of management strategies. Several coastal areas in south-eastern Australia were proclaimed shark refuge areas (SRAs) following overfishing of the school shark (Galeorhinus galeus) during the 1940s and 1950s. In con...

Estuarine habitats are frequently used as nurseries by elasmobranch species for their protection and abundant resources; however, global climate change is increasing the frequency and severity of environmental challenges in these estuaries that may negatively affect elasmobranch physiology. Hyposmotic events are particularly challenging for marine...

Wildlife tourism has been shown to cause behavioural changes to numerous species. Yet, there is still little understanding if behavioural changes have consequences for health and fitness. The current study combined accelerometry and respirometry to show that provisioning whitetip reef sharks (Trianadon obesus) for tourism increases their daily ener...

Shark nurseries are susceptible to environmental fluctuations in salinity because of their shallow, coastal nature; however, the physiological impacts on resident elasmobranchs are largely unknown. Gummy (Mustelus antarcticus) and school sharks (Galeorhinus galeus) use the same Tasmanian estuary as a nursery ground; however, each species has distin...

We report population genetic structure and fine-scale recruitment processes for the scallop beds (Pecten fumatus) in Bass Strait and the eastern coastline of Tasmania in southern Australia. Conventional population pairwise FST analyses are compared with novel discriminant analysis of principal components (DAPC) to assess population genetic structur...

Human activities have substantially changed the world's oceans in recent decades, altering marine food webs, habitats and biogeochemical processes [1]. Cephalopods (squid, cuttlefish and octopuses) have a unique set of biological traits, including rapid growth, short lifespans and strong life-history plasticity, allowing them to adapt quickly to ch...

Marine seismic surveys are used to explore for sub-seafloor oil and gas deposits. These surveys are conducted using air guns, which release compressed air to create intense sound impulses, which are repeated around every 8–12 seconds and can travel large distances in the water column. Considering the ubiquitous worldwide distribution of seismic sur...