Jamie M Kass

Tohoku University | Tohokudai · Graduate School of Life Sciences

Concerns about widespread human-induced declines in insect populations are mounting, yet little is known about how land-use change modifies both the trends and variability of insect communities, particularly in understudied regions. Here, we examine how the seasonal activity patterns of ants—key drivers of terrestrial ecosystem functioning—vary wit...

Released 4 years ago, the Wallace EcoMod application (R package wallace) provided an open‐source and interactive platform for modeling species niches and distributions that served as a reproducible toolbox and educational resource. wallace harnesses R package tools documented in the literature and makes them available via a graphical user interface...

Invertebrates constitute the majority of animal species and are critical for ecosystem functioning and services. Nonetheless, global invertebrate biodiversity patterns and their congruences with vertebrates remain largely unknown. We resolve the first high-resolution (~20-km) global diversity map for a major invertebrate clade, ants, using biodiver...

Quantitative evaluations to optimize complexity have become standard for avoiding overfitting of ecological niche models (ENMs) that estimate species’ potential geographic distributions. ENMeval was the first R package to make such evaluations (often termed model tuning) widely accessible for the Maxent algorithm. It also provided multiple methods...

Ecological community structure, which has traditionally been described in terms of taxonomic units, is driven by dispersal and environmental filters. Traits have recently been recognized as alternative units for quantifying community parameters, but they may have important differences with taxonomic units. For example, as taxon‐based community stru...

The increasing online availability of biodiversity data and advances in ecological modeling have led to a proliferation of open‐source modeling tools. In particular, R packages for species distribution modeling continue to multiply without guidance on how they can be employed together, resulting in high fidelity of researchers to one or several pac...

Biodiversity loss is a critical global challenge. The Kunming-Montréal Global Biodiversity Framework (GBF) sets ambitious goals to protect ecosystems, halt species loss, and enhance biodiversity. The GBF’s Monitoring Framework requires countries to track progress toward biodiversity targets using a standardized set of indicators that summarize comp...

Creating software tools that address the needs of a wide range of decision-makers requires the inclusion of differing perspectives throughout the development process. Software tools for biodiversity conservation often fall short in this regard, partly because broad decision-maker needs may exceed the toolkits of single research groups or even insti...

Biologists increasingly rely on computer code to collect and analyze their data, reinforcing the importance of published code for transparency, reproducibility, training, and a basis for further work. Here, we conduct a literature review estimating temporal trends in code sharing in ecology and evolution publications since 2010, and test for an inf...

Rare plant and vertebrate species have been documented to contribute disproportionately to the total morphological structure of species assemblages. These species often possess morphologically extreme traits and occupy the boundaries of morphological space. As rare species are at greater risk of extinction than more widely distributed species, huma...

On a global scale, biodiversity is geographically structured into regions of biotic similarity. Delineating these regions has been mostly targeted for tetrapods and plants, but those for hyperdiverse groups such as insects are relatively unknown. Insects may have higher biogeographic congruence with plants than tetrapods due to their tight ecologic...

Ecological community structure, which has traditionally been described in terms of taxonomic units, is driven by a combination of dispersal and environmental filters. Traits have recently been recognized as alternative units for quantifying community parameters, but they may have important differences with taxonomic units. For example, as taxon-bas...

On a global scale, biodiversity is geographically structured into regions of biotic similarity. Delineating these regions has been mostly targeted for tetrapods and plants, but those for hyperdiverse groups such as insects are relatively unknown. Insects may have higher biogeographic congruence with plants than tetrapods due to their tight ecologic...

Biologists increasingly rely on computer code to collect and analyze their data, reinforcing the importance of published code for transparency, reproducibility, training, and a basis for further work. Here we conduct a literature review examining temporal trends in code sharing in ecology and evolution publications since 2010, and test for an influ...

Hybridization is of key relevance for conservation of wild species, and yet it is still one of the most controversial issues in conservation. Identifying historical and contemporary factors promoting the formation and maintenance of hybrids is crucial for the management of endangered species, as well as characterizing the environmental factors and...

Understanding global patterns of genetic diversity is essential for describing, monitoring, and preserving life on Earth. To date, efforts to map macrogenetic patterns have been restricted to vertebrates, which comprise only a small fraction of Earth’s biodiversity. Here, we construct a global map of predicted insect mitochondrial genetic diversity...

Biologists increasingly rely on computer code, reinforcing the importance of published code for transparency, reproducibility, training, and a basis for further work. Here we conduct a literature review examining temporal trends in code sharing in ecology and evolution publications since 2010, and test for an influence of code sharing on citation r...

Abstract Aim Biogeographical regionalization is scant for most insect groups due to shortfalls in distribution and phylogenetic information, namely the Wallacean and Darwinian shortfalls respectively. Here, we focused on the European ants and compared new techniques to classical analyses based on regional lists and taxonomic methods. We asked the...

Concerns about widespread human-induced declines in insect populations are mounting, yet little is known about how land-use change modifies the dynamics of insect communities, particularly in understudied biomes. Here we examine how the seasonal patterns of ant activity, key drivers of ecosystem functioning, vary with human-induced land cover chang...

Conservation planning and decision‐making rely on evaluations of biodiversity status and threats that are based upon species' distribution estimates. However, gaps exist regarding automated tools to delineate species' current ranges from distribution estimates and use those estimates to calculate both species‐ and community‐level biodiversity metri...

Intensity and severity of bushfires in Australia have increased over the past few decades due to climate change, threatening habitat loss for numerous species. Although the impact of bushfires on vertebrates is well‐documented, the corresponding effects on insect taxa are rarely examined, although they are responsible for key ecosystem functions an...

In the field of niche modeling, data are often subject to multiple interacting sources of uncertainty, bias, and autocorrelation that make them difficult to analyze using traditional statistical approaches. Randomization is often used in statistical tests in order to estimate distributions that are difficult to specify analytically. Decades of deve...

Randomization tests are often used with species niche and distribution models to estimate model performance, test hypotheses, and measure methodological biases. Many of these tests involve building null models representing the hypothesis that there is no association between the species' occurrences and the environmental predictors, then comparing t...

Tropical ecosystems are often biodiversity hotspots, and invertebrates represent the main underrepresented component of diversity in large‐scale analyses. This problem is partly related to the scarcity of data widely available to conduct these studies and the lack of systematic organization of knowledge about invertebrates' distributions in biodive...

Here, we demonstrate how expert knowledge, diverse data types, and SDMs can be used together in a transparent and reproducible modeling workflow. Specifically, we show how expert knowledge regarding species’ habitat use, elevation, biotic interactions, and environmental tolerances can be used to make and refine range estimates using SDMs and variou...

Aim Biogeographic regionalization has fascinated biogeographers and ecologists for centuries and is endued with new vitality by evolutionary perspectives. However, progress is scant for most insect groups due to shortfalls in distribution and phylogenetic information, namely Wallacean and Darwinian shortfalls respectively. Here, we used the western...

The field of distributional ecology has seen considerable recent attention, particularly surrounding the theory, protocols, and tools for Ecological Niche Modeling (ENM) or Species Distribution Modeling (SDM). Such analyses have grown steadily over the past two decades—including a maturation of relevant theory and key concepts—but methodological co...

Environmental variation within a species’ range can create contrasting selective pressures, leading to divergent selection and novel adaptations. The conservation value of populations inhabiting environmentally marginal areas remains in debate and is closely related to the adaptive potential in changing environments. Strong selection caused by stre...

Understanding global patterns of genetic diversity (GD) is essential to describe, monitor, and preserve the processes giving rise to life on Earth. To date, efforts to map macrogenetic patterns have been restricted to vertebrate groups that comprise a small fraction of Earth's biodiversity. Here, we construct the first global map of predicted insec...

Accurate and up‐to‐date biodiversity forecasts enable robust planning for environmental management and conservation of landscapes under a wide range of uses. Future predictions of the species composition of ecological communities complement more frequently reported species richness estimates to better characterize the different dimensions of biodiv...

Accurate and up-to-date biodiversity forecasts enable robust planning for environmental management and conservation of landscapes under a wide range of uses. Future predictions of the species composition of ecological communities complement more frequently reported species richness estimates to better characterize the different dimensions of biodiv...

The amount of observational and specimen‐based biodiversity data available to researchers is increasing exponentially, yet the ability to manage and cite large, complex biodiversity datasets lags behind. This management and citation gap impedes reproducibility for data users and the ability for data publishers to track use and accumulate use citati...

Seagrasses play a vital role in structuring coastal marine ecosystems, but their distributional range and genetic diversity have declined rapidly over the past decades. In order to improve conservation of seagrass species, it is important to predict how climate change may impact their ranges. Such predictions are typically made with correlative spe...

Improved quantification of species’ ranges is needed to provide more accurate estimates of extinction risks for conservation planning. Highland tropical biodiversity may be particularly vulnerable to the anthropogenic changes in land cover and climate and is subject to overestimation of geographic range size in IUCN assessments. Here, we demonstrat...

Aim As climate change presents a major threat to biodiversity in the next decades, it is critical to assess its impact on species habitat suitability to inform biodiversity conservation. Species distribution models (SDMs) are a widely used tool to assess climate change impacts on species’ geographical distributions. As the name of these models sugg...

Environmental variation within a species’ range may create contrasting selective pressures, leading to divergent selection and novel adaptations in various populations. Here, we explored the potential of ecological niche models (ENMs) coupled with common-garden experiments to identify environmentally contrasting areas inside a species’ range, hypot...

Species distribution models (SDMs) are widely used in ecology, biogeography and conservation biology to estimate relationships between environmental variables and species occurrence data and make predictions of how their distributions vary in space and time. During the past two decades, the field has increasingly made use of machine learning approa...

As geographic range estimates for the IUCN Red List guide conservation actions, accuracy and ecological realism are crucial. IUCN’s extent of occurrence (EOO) is the general region including the species’ range, while area of occupancy (AOO) is the subset of EOO occupied by the species. Data‐poor species with incomplete sampling present particular d...

Understanding species interactions and their effects on distributions is crucial for assessing the impacts of global change, particularly for invasive species. Co-occurrence models can help investigate these effects when interactions are likely given shared traits. For such an assemblage of invasive and native carnivorans, we examined how patterns...

Species distribution models (SDMs) are widely used in ecology, biogeography, and conservation biology to understand the correlation of species occurrences with the environment and make predictions of how their distributions vary in space and time. During the past two decades, the field has increasingly made use of machine learning approaches for co...

Although long‐standing theory suggests that biotic variables are only relevant at local scales for explaining the patterns of species' distributions, recent studies have demonstrated improvements to species distribution models (SDMs) by incorporating predictor variables informed by biotic interactions. However, some key methodological questions rem...

Aim The geographic range and ecological niche of species are widely used concepts in ecology, evolution and conservation and many modelling approaches have been developed to quantify each. Niche and distribution modelling methods require a litany of design choices; differences among subdisciplines have created communication barriers that increase i...

Aim Ecological niche modelling requires robust estimation of model performance and significance, but common evaluation approaches often yield biased estimates. Null models provide a solution but are rarely used in this field. We implemented an important modification to existing null model tests, evaluating null models with the same withheld records...

In wide-ranging taxa with historically dynamic ranges, past allopatric isolation and range expansion can both influence the current structure of genetic diversity. Considering alternate historical scenarios involving expansion from either a single refugium or from multiple refugia can be useful in differentiating the effects of isolation and expans...

Understanding a species’ distributional limits is a necessary step for developing conservation priorities. The olinguito (Procyonidae: Bassaricyon neblina) is a recently described, medium-sized carnivoran found in Northern Andean cloud forests. Here, we provide revised distributional estimates for this species using current ecological niche modelin...

Scientific research increasingly calls for open‐source software that is flexible, interactive, and expandable, while providing methodological guidance and reproducibility. Currently, many analyses in ecology are implemented with “black box” graphical user interfaces (GUIs) that lack flexibility or command‐line interfaces that are infrequently used...

There is an urgent need for more ecologically realistic models for better predicting the effects of climate change on species’ potential geographic distributions. Here we build ecological niche models using MAXENT and test whether selecting predictor variables based on biological knowledge and selecting ecologically realistic response curves can im...

Recent studies have demonstrated a need for increased rigour in building and evaluating ecological niche models ( ENM s) based on presence‐only occurrence data. Two major goals are to balance goodness‐of‐fit with model complexity (e.g. by ‘tuning’ model settings) and to evaluate models with spatially independent data. These issues are especially cr...

Extensive evidence of the adverse impacts of polychlorinated biphenyls (PCBs) to wildlife, domestic animals, and humans has now been documented for over 40 years. Despite the ban on production and new use of PCBs in the United States in 1979, a number of fish consumption advisories remain in effect, and there remains considerable uncertainty regard...

The Klamath-Siskiyou Ecoregion has been a refuge for species during past climate change events, but current anthropogenic stressors are likely compromising its effectiveness as a refugium for this century's projected changes. Reducing non-climate stressors and securing protection for large, complex landscapes are important long-term actions to alle...