James Whiting

University of the West of England, Bristol | UWE Bristol · Department of Computer Science and Creative Technologies

Neuromorphic computing devices attempt to emulate features of biological nervous systems through mimicking the properties of synapses, towards implementing the emergent properties of their counterparts, such as learning. Inspired by recent advances in the utilisation of liquid marbles (microlitre quantities of fluid coated in hydrophobic powder) fo...

Neuromorphic computing devices attempt to emulate features of biological nervous systems through mimicking the properties of synapses, towards implementing the emergent properties of their counterparts, such as learning. Inspired by recent advances in the utilisation of liquid marbles (microlitre quantities of fluid coated in hydrophobic powder) fo...

As the extent to which aquatic environments are polluted with nano-scale objects is becoming known, we are presented with an urgent need to study their effects on various forms of life and to clear and/or detoxify them. A range of methods exist to these ends, but a lack of inter-study comparability arising from an absence of experimental standardis...

Slime mould Physarum polycephalum is a large single cell capable of distributed sensing, concurrent information processing, parallel computation, and decentralised actuation. The ease of culturing and experimenting with Physarum makes this slime mould an ideal substrate for real-world implementations of unconventional sensing and computing devices....

Cilia are finger-like cell-surface organelles that are used by certain varieties of aquatic unicellular organisms for motility, sensing and object manipulation. Initiated by internal generators and external mechanical and chemical stimuli, coordinated undulations of cilia lead to the motion of a fluid surrounding the organism. This motion transport...

The aquatic unicellular organism Paramecium caudatum uses cilia to swim around its environment and to graze on food particles and bacteria. Paramecia use waves of ciliary beating for locomotion, intake of food particles and sensing. There is some evidence that Paramecia pre-sort food particles by discarding larger particles, but intake the particle...

We exploit chemo- and galvanotactic behaviour of Paramecium caudatum to design a hybrid device that allows for controlled uptake, transport and deposition of environmental micro- and nanoparticulates in an aqueous medium. Manipulation of these objects is specific, programmable and parallel. We demonstrate how device operation and output interpretat...

The nanotechnology revolution has allowed us to speculate on the possibility of hybridising nanoscale materials with live substrates, yet significant doubt still remains pertaining to the effects of nanomaterials on biological matter. In this investigation, we cultivate the ciliated protistic pond-dwelling microorganism Paramecium caudatum in the p...

Motile cilia are cell-surface organelles whose purposes, in ciliated protists and certain ciliated vertebrate epithelia, include generating fluid flow, sensing and substance uptake. Certain properties of cilia arrays, such as beating synchronisation and manipulation of external proximate particulate matter, are considered emergent, but remain incom...

The nanotechnology revolution has allowed us to speculate on the possibilities of hybridising nanoscale materials with live substrates, yet significant doubt still remains pertaining to the effects of nanomaterials on biological matter. In this investigation we cultivate the ciliated protistic pond-dwelling microorganism Paramecium caudatum in the...

Motile cilia are cell-surface organelles whose purposes, in ciliated protists and certain ciliated vertebrate epithelia, include generating fluid flow, chemosensation, mechanosensation and substance uptake. Certain properties of cilia arrays, such as beating synchronisation and manipulation of external proximate particulate matter, are considered e...

Networks of protoplasmic tubes of organism Physarum polycehpalum are macro-scale structures which optimally span multiple food sources to avoid repellents yet maximize coverage of attractants. When data are presented by configurations of attractants and behaviour of the slime mould is tuned by a range of repellents, the organism preforms computatio...

We report the progress of using the plasmodium of Physarum as a biological electronic component. We provide blue prints of experimental prototypes of Physarum wires and analyse their transfer function, discuss how lifespan of a Physarum can be increased. We overview our experimental laboratory results on using Physarum wires with buffers and evalua...

We overview families of Boolean logical gates and circuits implemented in computer models and experimental laboratory prototypes of computing devices made of living slime mould Physarum polycephalum. These include attraction gates, based on chemo-tactic behaviour of slime mould; ballistic gates, employing inertial movement of the slime mould’s acti...

We show how the slime mould can be used as a chemical sensor and investigate how the organism combines different sensory information. We have produced a biosensor using protoplasmic tubes of Physarum which is capable of detecting various biologically active chemicals in the local environment; this progress is akin to developing a biological nose us...

Purpose Protoplasmic tubes of Physarum polycephalum, also know as Physarum Wires (PW), have been previously suggested as novel bio-electronic components. Until recently, practical examples of electronic circuits using PWs have been limited. These PWs have been shown to be self repairing, offering significant advantage over traditional electronic co...

Computing devices are composed of spatial arrangements of simple fundamental logic gates. These gates may be combined to form more complex adding circuits and, ultimately, complete computer systems. Implementing classical adding circuits using unconventional, or even living substrates such as slime mould Physarum polycephalum, is made difficult and...

The slime mould Physarum polycephalum is a large single celled myxomycete; its plasmodium consists of tubes which extend to find sources of food. It has been previously shown that the tubes are conductive with a resistance of approximately 3MΩ, and have been used in basic DC circuits. Hybrid slime mould-electronic circuits have been proposed, using...

The Phychip project is a collaborative European research initiative to design and implement computation using the organism Physarum polycephalum; it is funded by the Seventh Framework Programme (FP7) by the European Commission within CORDIS and the FET Proactive scheme. Included in this presentation are details the development of a Physarum based b...

A plurality of whole cell biosensors have been developed using many different cell types. Biosensors incorporate biomolecular components or whole cells to facilitate specific analyte interaction; research documented here presents a novel whole cell biosensor based on the slime mould Physarum polycephalum (PP). The electrical response of PP when exp...

Physarum polycephalum is a large single amoeba cell, which in its plasmodial phase,forages and connects nearby food sources with protoplasmic tubes. The organism forages for food by growing these tubes towards detected food stuffs, this foraging behaviour is governed by simple rules of photoavoidance and chemotaxis. The electrical activity of the t...

Surface electrical potential and observational growth recordings were made of a protoplasmic tube of the slime mould Physarum polycephalum in response to a multitude of stimuli with regards to sensory fusion or multisensory integration. Each stimulus was tested alone and in combination in order to evaluate for the first time the effect that multipl...

Plasmodium of slime mould Physarum polycephalum is a large single celled organism visible unaided by the eye. This slime mould is capable of optimising the shape of its protoplasmic networks in spatial configurations of attractants and repellents. Such adaptive behaviour can interpreted as computation. When exposed to attractants and repellents, Ph...

Plasmodium of slime mould Physarum polycephalum is a large single celled organism visible unaided by the eye. This slime mould is capable of optimising the shape of its protoplasmic networks in spatial configurations of attractants and repellents. Such adaptive behaviour can interpreted as computation. When exposed to attractants and repellents, Ph...

There is a high incidence of inflammation and metaplasia at the gastro-oesophageal junction (GOJ) in asymptomatic volunteers. Additionally, the majority of patients with GOJ adenocarcinomas have no history of reflux symptoms. We report the effects of waist belt and increased waist circumference (WC) on the physiology of the GOJ in asymptomatic volu...

Introduction Epidemiology demonstrates an association between obesity, hiatus hernia and acid reflux but mechanism is unclear. We have examined the structure and function of the gastro-oesophageal (GO) junction in healthy subjects with and without obesity and the effects of elevating intra-abdominal pressure with belt. Methods We recruited 8 subjec...

Abstract Understanding the physiology of gastroesophageal junction (GEJ) is important as failure of its function is associated with reflux disease, hiatus hernia, and cancer. In recent years, there have been impressive developments in high resolution technologies allowing measurement of luminal pressure, pH, and impedance. One obvious deficiency is...

Transient lower oesophageal sphincter relaxations (TLOSRs) occur frequently and are the main mechanism of acid reflux. The only means of currently detecting TLOSRs is intra-luminal manometry and the probes themselves may stimulate TLOSRs. The squamo-columnar junction moves 4-5 centimeters proximally during TLOSRs and this provides a means of detect...

Transient lower oesophageal sphincter relaxations (TLOSRs) occur frequently and are the main mechanism of acid reflux. The only means of currently detecting TLOSRs is intra-luminal manometry and the probes themselves may stimulate TLOSRs. The squamo-columnar junction moves 4-5 centimeters proximally during TLOSRs and this provides a means of detect...

Background Proximal displacement of the gastro-esophageal junction (GEJ) is present in hiatus hernia but also occurs transiently during transient lower esophageal sphincter relaxations (TLESRs) and swallows. Using a novel magnetic-based technique we have performed detailed examination of the GEJ movement during TLESRs and swallows in healthy subjec...

Introduction In hiatus hernia there is proximal displacement of the gastro-oesophageal junction (GOJ) relative to the crural diaphragm impairing barrier function. Fluoroscopic studies have indicated proximal migration of the GOJ during TLOSRs but detailed study has been limited by radiation exposure. Using a non-radiological technique we have perfo...

The high resolution esophageal manometry system manufactured by Sierra Scientific Instruments is widely used. The technology is liable to 'thermal drift', a change in measured pressure due to change in temperature. This study aims to characterize 'thermal drift' and minimize its impact. Response of the system to immediate temperature change (20 °C...

Most pathology of the upper gastrointestinal tract now occurs close to the gastro-oesophageal squamo-columnar junction (SCJ). Studying the pathophysiology of this region even using high resolution pH, impedance and manometry is unreliable due to constant movement with respiration, swallowing and transient lower oesophageal sphincter relaxations. A...

Introduction The position of the squamo-columnar (SC) junction is constantly changing and this precludes accurate monitoring of acid exposure of the most distal oesophagus. The authors have developed a novel probe to allow continuous monitoring of the SC junction location. The method involves endoscopically clipping a small magnet (2 mm diameter an...

Introduction The gastro-oesophageal junction is very mobile and constantly changing position with breathing, swallowing and transient lower oesophageal sphincter relaxation (TLESR). The only method currently available for studying its location is fluoroscopic screening and this is limited by radiation exposure. We have developed a method allowing c...

Introduction High resolution manometry (HRM) is a sophisticated and widely used technology allowing detailed examination of oesophageal function. A described limitation of the HRM system is its propensity to ‘thermal drift’. Thermal drift is a false change in the measured pressure attributed to the change from ambient to body temperature. In prolon...