J. Salvador Arias

UEL, CONICET-Fundación Miguel Lillo

Based on Hovenkamp’s ideas on historical biogeography, we present a method for analysis of taxon history, spatial analysis of vicariance, which uses observed distributions as data, thus requiring neither predefined areas nor assumptions of hierarchical relations between areas. The method is based on identifying sister nodes with disjunct (allopatri...

Aim. To develop and implement a method for phylogenetic biogeography that is both event based and geographically explicit, that is, that uses the geographical ranges observed in the terminals instead of ‘predefined areas.’ Methods. The method, GEM (Geographically explicit Event Model), attributes vicariance, sympatry (range copying), point sympatr...

A likelihood method that approximates the behaviour of implied weighting is described. This approach provides a likelihood perspective on several aspects of implied weighting, such as guidance for the choice of concavity values, a justification to use different concavities for different numbers of taxa, and a natural basis for extended implied weig...

The problem of character weighting in cladistic analysis is revisited. The finding that, in large molecular data sets, removal of third positions (with more homoplasy) decreases the number of well supported groups has been interpreted by some authors as indicating that weighting methods are unjustified. Two arguments against that interpretation are...

We here report on a well-preserved juvenile lizard specimen in Albian amber (ca. 110 mya) from the Hkamti site (Myanmar). This new taxon is represented by an articulated skull and the anterior portion of the trunk, including the pectoral girdle and forelimbs. The scleral ossicles and eyelid are also visible, and the specimen exhibits pristine detai...

We here report on a well-preserved juvenile lizard specimen in Albian amber (ca. 110 mya) from the Hkamti site in Myanmar. This new taxon, Retinosaurus hkamtiensis gen. et sp. nov., is represented by an articulated skull and the anterior portion of the trunk, including the pectoral girdle and forelimbs. The ocular skeleton (scleral ossicles) and ey...

Oculudentavis khaungraae was described based on a tiny skull trapped in amber. The slender tapering rostrum with retracted narial openings, large eyes, and short vaulted braincase led to its identification as the smallest avian dinosaur on record, comparable to the smallest living hummingbirds. Despite its bird-like appearance, Oculudentavis showed...

Ancient amphibians preserved in amber Extant amphibians are represented by three fairly simple morphologies: the mostly hopping frogs and toads, the low-crawling salamanders, and the limbless caecilians. Until the early Pleistocene—and for more than 165 million years—there was another group, the albanerpetontids. We know little about this group bec...

Oculudentavis khaungraae was described based on a tiny skull trapped in amber. The slender tapering rostrum with retracted osseous nares, large eyes, and short vaulted braincase led to its identification as the smallest avian dinosaur on record, comparable to the smallest living hummingbirds. Despite its bird-like appearance, Oculudentavis showed s...

One of the lasting controversies in phylogenetic inference is the degree to which specific evolutionary models should influence the choice of methods. Model-based approaches to phylogenetic inference (likelihood, Bayesian) are defended on the premise that without explicit statistical models there is no science, and parsimony is defended on the grou...

This paper describes two types of problems related to tree shapes, as well as algorithms that can be used to solve these problems. The first problem is that of comparing the similarity of the unlabelled shapes instead of merely their degree of balance, in a manner analogous to that routinely used to compare topologies for labelled trees. There are...

BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. ABSTRACT.—A fragmentary fossil lizard from Uquía Form...

Obtaining a well supported schema of phylogenetic relationships among the major groups of living organisms requires considering as much taxonomic diversity as possible, but the computational cost of calculating large phylogenies has so far been a major obstacle. We show here that the parsimony algorithms implemented in TNT can successfully process...

“Phylogenetic Analysis for Comparing Trees” (PACT) has been presented as a “new algorithm” for the study of biogeography and coevolution. However, an exploration of this algorithm revealed some important problems missed in the original description. First, PACT is not new, rather it is an extension of Tree Mapping under Maximum Codivergence (TM-MC)....

The wild common bean (Phaseolus vulgaris) is widely but discontinuously distributed from northern Mexico to northern Argentina on both sides of the Isthmus of Panama. Little is known on how the species has reached its current disjunct distribution. In this research, chloroplast DNA polymorphisms in seven non-coding regions were used to study the hi...

Faith and Trueman [Syst. Biol. (2001) 331] recently proposed “Profile Parsimony” (PP) as a new form of phylogenetic analysis, but it is equivalent to the Implied Weights (IW) method when certain functions are used. The PP method cannot accommodate missing/inapplicable cells and/or multistate characters. Finally we demonstrate that, as defined, PP s...