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Irene Calderón-Sanou

Irene Calderón-Sanou
EcoFoG

Macroecology and community ecology of plants and soil organisms. eDNA metabarcoding and multitrophic networks.

About

30
Publications
13,338
Reads
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315
Citations
Introduction
I am interested in understanding the drivers of plant-soil multi-trophic assemblages through time and space. Part of my research aims to implement the use of environmental DNA metabarcoding to monitor soil biodiversity in the form of soil food webs. In my current position at the EcoFog lab in French Guyana, I investigate the interplay between environmental change and human activities on soil communities in the Amazon, and their implications for soil health and forest regeneration.

Publications

Publications (30)
Article
Full-text available
Aim It is widely recognized that the prediction of invasion success at large biogeographical scales requires jointly accounting for alien species traits and local community filters, such as abiotic conditions, biotic interactions and propagule pressure. Despite this recognition, interactions between traits and community filters are generally neglec...
Article
Full-text available
Soil organic matter (SOM) transformation processes are regulated by the activities of plants, microbes, and fauna. Compared with plants and microbes, effects of soil fauna are less understood because of their high taxonomic and functional diversity, and mix of direct and indirect effect mechanisms. Trait‐based approaches offer a generic perspective...
Article
Full-text available
Recent climate and land use change, and pollution have led to concerning alterations in biodiversity and ecosystem functions, jeopardizing nature’s contributions to people. Mountainous regions are not immune to these threats, experiencing the impacts of global warming, increased recreational activities, and changes in agricultural practices. Levera...
Preprint
Full-text available
To address the biodiversity crisis, global and regional policy frameworks like the Kunming-Montreal Global Biodiversity Framework and the European Green Deal demand to monitor biodiversity. Despite these efforts, existing approaches for monitoring biodiversity remain fragmented and lack data integration. Here, we review and synthesize crucial infor...
Article
Full-text available
Arthropods play a vital role in ecosystems; yet, their distributions remain poorly understood, particularly in mountainous regions. This study delves into the modelling of the distribution of 31 foliar arthropod genera in the French Alps, using a comprehensive approach encompassing multi‐trophic sampling, community DNA metabarcoding and random fore...
Preprint
Full-text available
The Deliverable discusses the critical role of soil in supporting terrestrial ecosystems, agriculture, and global climate regulation. It highlights that a significant portion of European soils are currently unhealthy, which has far-reaching consequences, including risks to human health, the environment, and the economy. Soil degradation affects foo...
Method
Full-text available
EuropaBON EBV workflow templates The information provided here represents the EBV workflow templates collected during the EuropaBON online workshop on Essential Biodiversity Variable (EBV) workflows from 22–24 February 2023. The templates were designed to capture comprehensive descriptions about the three workflow components (data collection and s...
Technical Report
Full-text available
The information represents the EBV workflow templates collected during the EuropaBON online workshop on Essential Biodiversity Variable (EBV) workflows from 22–24 February 2023. The templates were designed to capture comprehensive descriptions about the three workflow components (data collection and sampling, data integration, and modelling) that...
Article
Our knowledge of the factors influencing the distribution of soil organisms is limited to specific taxonomic groups. Consequently, our understanding of the drivers shaping the entire soil multitrophic network is constrained. To address this gap, we conducted an extensive soil biodiversity monitoring program in the French Alps, using environmental D...
Article
Although soil ecology has benefited from recent advances in describing the functional and trophic traits of soil organisms, data reuse for large-scale soil food-web reconstructions still faces challenges. These obstacles include: (1) most data on the trophic interactions and feeding behaviour of soil organisms being scattered across disparate repos...
Article
Full-text available
Biotic interactions are widely recognised as the backbone of ecological communities, but how best to study them is a subject of intense debate, especially at macro‐ecological scales. While some researchers claim that biotic interactions need to be observed directly, others use proxies and statistical approaches to infer them. Despite this ambiguity...
Preprint
Full-text available
Although soil ecology has benefited from recent advances in describing the functional and trophic traits of soil organisms, data reuse for large-scale soil food-web reconstructions still faces challenges. These obstacles include: (1) most data on the trophic interactions and feeding behaviour of soil organisms being scattered across disparate repos...
Preprint
Full-text available
Our knowledge of the factors influencing the distribution of soil organisms is limited to specific taxonomic groups. Consequently, our understanding of the drivers shaping the entire soil food web is constrained. To address this gap, we conducted an extensive soil biodiversity monitoring program in the French Alps, using environmental DNA to obtain...
Article
Full-text available
The re‐assembly of plant communities during climate warming depends on several concurrent processes. Here, we present a novel framework that integrates spatially explicit sampling, plant trait information and a warming experiment to quantify shifts in these assembly processes. By accounting for spatial distance between individuals, our framework al...
Poster
Full-text available
This poster, designed by Pierre Ganault, presetend the sOilFauna project to the SFE²-GfÖ-EEF conference in Metz on November 2022. The poster is largely inspired by the publication by Mathieu et al., 2022 Soil Organisms 10.25674/so94iss2id282
Article
Full-text available
Global change is affecting soil biodiversity and functioning across all terrestrial ecosystems. Still, much is unknown about how soil biodiversity and function will change in the future in response to simultaneous alterations in climate and land use, as well as other environmental drivers. It is crucial to understand the direct, indirect and intera...
Article
Full-text available
Understanding global biodiversity change, its drivers, and the ecosystem consequences requires a better appreciation of both the factors that shape soil macrofauna communities and the ecosystem effects of these organisms. The project "sOilFauna" was funded by the synthesis center sDiv (Germany) to address this major gap by forming a community of so...
Article
Classifying organisms has a wide use and a long history in ecology. However, the meaning of a 'group of or-ganisms' and how to group organisms is still the subject of much theoretical and empirical work. Achieving this long quest requires simplifying the complexity of species niches for which relevant morphological, behavioural, biochemical or life...
Thesis
Full-text available
Although soil organisms represent one-quarter of the whole biodiversity on earth, our current understanding of the main drivers of soil biodiversity along environmental gradients is mostly restricted to a limited set of aboveground macro-organisms. In light of increasing global threats to ecosystems, the inclusion of soil organisms into macroecolog...
Conference Paper
Full-text available
At the edge of the sixth mass extinction, Anthropos continues the quest of “naming the other” with the promise that identifying all the species on Earth will be the main step of assuring their conservation. However, by self-positioning as the only name-giver, Anthropos has only sharpened the human-nonhuman dualism and restricted kinship to only Ant...
Article
Full-text available
Aim Although soil biodiversity is extremely rich and spatially variable, both in terms of species and trophic groups, we still know little about its main drivers. Here, we contrast four long‐standing hypotheses to explain the spatial variation of soil multi‐trophic diversity: energy, physiological tolerance, habitat heterogeneity and resource heter...
Article
Full-text available
The increasing severity and frequency of natural disturbances requires a better understanding of their effects on all compartments of biodiversity. In Northern Fennoscandia, recent large-scale moth outbreaks have led to an abrupt change in plant communities from birch forests dominated by dwarf shrubs to grass-dominated systems. However, the indire...
Preprint
Full-text available
The increasing severity and frequency of natural disturbances requires a better understanding of their effects on all compartments of biodiversity. In Northern Fennoscandia, recent large-scale moth outbreaks have led to an abrupt change in plant communities from birch forests dominated by dwarf shrubs to grass-dominated systems. However, the indire...
Article
Full-text available
Conspecific negative density dependence (CNDD) is one of the main mechanisms influencing diversity maintenance in tropical forests. Tropical highland forests, in contrast to most lowland forests, are commonly dominated by a few tree species, and testing the importance of density dependence effects on seedling establishment of dominant trees may pro...
Article
Full-text available
Aim Environmental DNA (eDNA) is increasingly used for analysing and modelling all‐inclusive biodiversity patterns. However, the reliability of eDNA‐based diversity estimates is commonly compromised by arbitrary decisions for curating the data from molecular artefacts. Here, we test the sensitivity of common ecological analyses to these curation ste...
Preprint
Full-text available
Conspecific negative density-dependence (CNDD) is one of the main mechanisms proposed to regulate species coexistence. Tropical highland forests, in contrast to diverse lowland forests, are commonly dominated by a few tree species. Testing the importance of density-dependence effects on seedling establishment of dominant trees may provide insights...
Article
Full-text available
An isolated population of Astrocasia peltata Standl. was discovered growing on the banks of Brasil Creek in Parque Nacional Diriá, in Costa Rica. This is the first record of the species outside of Mexico where it was believed endemic. An updated morphological description of the species is presented and possible explanations for the disjunct geograp...
Article
Full-text available
Myxomycetes have been studied formally in most of Central America except for El Salvador. Even though this country is the last in the region to begin an official inventory for this group of organisms, the 37 new records reported herein suggest that the myxobiota of El Salvador can be valuable for biogeographical analyses. As an example, this study...

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