Hamid R. Rabiee

• Distinguished Professor
• Managing Director at Sharif University of Technology

Distributed resource allocation finds applications in multi-agent-based networked scheduling scenarios. In this work, a single-bit solution is proposed for distributed resource allocation to optimize strictly convex cost functions. The main contribution is that the proposed solution only requires the exchange of single-bit of (local) gradient infor...

This paper proposes an accelerated consensus-based distributed iterative algorithm for resource allocation and scheduling. The proposed gradient-tracking algorithm introduces an auxiliary variable to add momentum towards the optimal state. We prove that this solution is all-time feasible, implying that the coupling constraint always holds along the...

Introduction The integration of Artificial Intelligence (AI) and Machine Learning (ML) is transforming public health by enhancing the assessment and mitigation of health inequities. As the use of AI tools, especially ML techniques, rises, they play a pivotal role in informing policies that promote a more equitable society. This study aims to develo...

Intelligent transportation systems have recently emerged to address the growing interest for safer, more efficient, and sustainable transportation solutions. In this direction, this paper presents distributed algorithms for control and optimization over vehicular networks. First, we formulate the autonomous vehicle platooning framework based on mod...

Intelligent transportation systems (ITS) aim to advance innovative strategies relating to different modes of transport, traffic management, and autonomous vehicles. This paper studies the platoon of connected and autonomous vehicles (CAV) and proposes a distributed observer to track the state of the CAV dynamics. First, we model the CAV dynamics vi...

Decentralized strategies are of interest for learning from large-scale data over networks. This paper studies learning over a network of geographically distributed nodes/agents subject to quantization. Each node possesses a private local cost function, collectively contributing to a global cost function, which the considered methodology aims to min...

Decentralized optimization strategies are helpful for various applications, from networked estimation to distributed machine learning. This paper studies finite-sum minimization problems described over a network of nodes and proposes a computationally efficient algorithm that solves distributed convex problems and optimally finds the solution to lo...

Users increasing activity across various social networks made it the most widely used platform for exchanging and propagating information among individuals. To spread information within a network, a user initially shared information on a social network, and then other users in direct contact with him might have shared that information. Information...

Background Copy number variants (CNVs) have become increasingly instrumental in understanding the etiology of all diseases and phenotypes, including Neurocognitive Disorders (NDs). Among the well-established regions associated with ND are small parts of chromosome 16 deletions (16p11.2) and chromosome 15 duplications (15q3). Various methods have be...

Decentralized optimization strategies are helpful for various applications, from networked estimation to distributed machine learning. This paper studies finite-sum minimization problems described over a network of nodes and proposes a computationally efficient algorithm that solves distributed convex problems and optimally finds the solution to lo...

Cancer treatment has become one of the biggest challenges in the world today. Different treatments are used against cancer; drug-based treatments have shown better results. On the other hand, designing new drugs for cancer is costly and time-consuming. Some computational methods, such as machine learning and deep learning, have been suggested to so...

Decentralized algorithms have gained substantial interest owing to advancements in cloud computing, Internet of Things (IoT), intelligent transportation networks, and parallel processing over sensor networks. The convergence of such algorithms is directly related to specific properties of the underlying network topology. Specifically, the clusterin...

Decentralized algorithms have gained substantial interest owing to advancements in cloud computing, Internet of Things (IoT), intelligent transportation networks, and parallel processing over sensor networks. The convergence of such algorithms is directly related to specific properties of the underlying network topology. Specifically, the clusterin...

Motivation Drug repurposing is a viable solution for reducing the time and cost associated with drug development. However, thus far, the proposed drug repurposing approaches still need to meet expectations. Therefore, it is crucial to offer a systematic approach for drug repurposing to achieve cost savings and enhance human lives. In recent years,...

Decentralized strategies are of interest for learning from large-scale data over networks. This paper studies learning over a network of geographically distributed nodes/agents subject to quantization. Each node possesses a private local cost function, collectively contributing to a global cost function, which the proposed methodology aims to minim...

Meta-learning involves multiple learners, each dedicated to specific tasks, collaborating in a data-constrained setting. In current meta-learning methods, task learners locally learn models from sensitive data, termed support sets. These task learners subsequently share model-related information, such as gradients or loss values, which is computed...

The fast growth of social networks and their data access limitations in recent years have led to increasing difficulty in obtaining the complete topology of these networks. However, diffusion information over these networks is available, and many algorithms have been proposed to infer the underlying networks using this information. The previously p...

In spite of the excellent capabilities of machine learning algorithms, their performance deteriorates when the distribution of test data differs from the distribution of training data. In medical data research, this problem is exacerbated by its connection to human health, expensive equipment, and meticulous setups. Consequently, achieving domain g...

Background: In line with the advancement of Artificial Intelligence (AI), innovative solutions have been designed to improve healthrelated Sustainable Development Goals (SDGs). Accordingly, there is an increasing trend in the realm of AI and SDG research areas. Objectives: This study aimed to analyze the trends and patterns of AI research in health...

Background Policymakers require precise and in-time information to make informed decisions in complex environments such as health systems. Artificial intelligence (AI) is a novel approach that makes collecting and analyzing data in complex systems more accessible. This study highlights recent research on AI’s application and capabilities in health...

This paper proposes two nonlinear dynamics to solve constrained distributed optimization problem for resource allocation over a multi-agent network. In this setup, coupling constraint refers to resource-demand balance which is preserved at all-times. The proposed solutions can address various model nonlinearities, for example, due to quantization a...

Introduction Artificial Intelligence (AI) represents a significant advancement in technology, and it is crucial for policymakers to incorporate AI thinking into policies and to fully explore, analyze and utilize massive data and conduct AI-related policies. AI has the potential to optimize healthcare financing systems. This study provides an overvi...

Purpose: The rapid spread of the COVID-19 omicron variant virus has resulted in an overload of hospitals around the globe. As a result, many patients are deprived of hospital facilities, increasing mortality rates. Therefore, mortality rates can be reduced by efficiently assigning facilities to higher-risk patients. Therefore, it is crucial to esti...

Background The governance of health systems is complex in nature due to several intertwined and multi-dimensional factors contributing to it. Recent challenges of health systems reflect the need for innovative approaches that can minimize adverse consequences of policies. Hence, there is compelling evidence of a distinct outlook on the health ecosy...

Understanding the impact of network clustering and small-world properties on epidemic spread can be crucial in developing effective strategies for managing and controlling infectious diseases. Particularly in this work, we study the impact of these network features on targeted intervention (e.g., self-isolation and quarantine). The targeted individ...

Introduction Pancreatic cancer is thought to have an extremely dismal prognosis. Most cancer-related deaths occur from metastasis rather than the primary tumor, although individuals with tumors smaller than 1 cm in diameter have more than 80% 5-year survival. Thus, the current protocol introduces PanCanAID project which intends to develop several c...

In practical scenarios, the effectiveness of sequential recommendation systems is hindered by the user cold-start problem, which arises due to limited interactions for accurately determining user preferences. Previous studies have attempted to address this issue by combining meta-learning with user and item-side information. However, these approach...

The genetic etiology of brain disorders is highly heterogeneous, characterized by abnormalities in the development of the central nervous system that lead to diminished physical or intellectual capabilities. The process of determining which gene drives disease, known as “gene prioritization,” is not entirely understood. Genome-wide searches for gen...

Access to complete data in large-scale networks is often infeasible. Therefore, the problem of missing data is a crucial and unavoidable issue in the analysis and modeling of real-world social networks. However, most of the research on different aspects of social networks does not consider this limitation. One effective way to solve this problem is...

Historical bridges comprise part of any society’s history, culture, and identity and reveal the manufacturing technology of hydraulic structures at their time. Nevertheless, these structures deteriorate because of their materials, the passage of time, and natural factors. Because of drought in the past two decades, historic bridges in Isfahan have...

Background Policymakers require precise, in-time information to make informed decisions in complex environments such as health systems. Artificial intelligence (AI) is a novel approach that makes collecting and analyzing data in complex systems more accessible. This study highlights recent research on AI's application and capabilities in health pol...

Recent studies in network science and control have shown a meaningful relationship between the epidemic processes (e.g., COVID-19 spread) and some network properties. This paper studies how such network properties, namely clustering coefficient and centrality measures (or node influence metrics), affect the spread of viruses and the growth of epide...

Many people today get their news from social media. It is possible to propagate news using textual, visual, or multi-modal information. The popularity of social networks and their wide use by people make them attractive platforms for spreading fake news. Detecting fake news is essential to preventing its spread. Fake news can be a false article or...

Recent studies in network science and control have shown a meaningful relationship between the epidemic processes (e.g., COVID-19 spread) and some network properties. This paper studies how such network properties, namely clustering coefficient and centrality measures (or node influence metrics), affect the spread of viruses and the growth of epide...

Previous studies demonstrate the critical importance of non-coding RNAs interfacing with chromatin-modifying machinery resulting in promoter-enhancer-based gene regulation and raise the possibility that many other enhancer-like RNAs may operate via similar mechanisms. Critically, more than 80% of the disease-linked variations identified in genome-w...

Machine learning algorithms have revolutionized different fields, including natural language processing, computer vision, signal processing, and medical data processing. Despite the excellent capabilities of machine learning algorithms in various tasks and areas, the performance of these models mainly deteriorates when there is a shift in the test...

Deep learning-based graph generation approaches have remarkable capacities for graph data modeling, allowing them to solve a wide range of real-world problems. Making these methods able to consider different conditions during the generation procedure even increases their effectiveness by empowering them to generate new graph samples that meet the d...

Pandemics are epidemics that spread rapidly over countries or continents. They are large-scale outbreaks of contagious diseases that can significantly increase morbidity and mortality and cause substantial economic and social harm. If not properly controlled, the hospitals, physicians, and care staff become overloaded, driving the exponential growt...

[This corrects the article DOI: 10.1371/journal.pcbi.1010241.].

This paper proposes two nonlinear dynamics (one agent-based and one link-based) to solve a constrained distributed optimization (resource allocation) problem over a multi-agent network. The sum-preserving coupling refers to the constant amount of resources in the allocation problem. The proposed protocols consider model nonlinearities on agents, in...

The genetic etiology of neurodevelopmental disorders is highly heterogeneous. They are characterized by abnormalities in the development of the central nervous system, which lead to diminished physical or intellectual capabilities. Determining which gene is the driver of disease (not just a passenger), termed ‘gene prioritization,’ is not entirely...

Background Several types of RNA in the cell are usually involved in biological processes with multiple functions. Coding RNAs code for proteins while non-coding RNAs regulate gene expression. Some single-strand RNAs can create a circular shape via the back splicing process and convert into a new type called circular RNA (circRNA). circRNAs are amon...

Background The advent of high throughput sequencing has enabled researchers to systematically evaluate the genetic variations in cancer, identifying many cancer-associated genes. Although cancers in the same tissue are widely categorized in the same group, they demonstrate many differences concerning their mutational profiles. Hence, there is no de...

Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions and exploits higher order chromatin structures. Conceptually Hi-C data counts interaction frequencies between every position in the genome and every other position. Biologically functional interactions are expected to occur mo...

Non-coding RNAs (ncRNAs) form a large portion of the mammalian genome. However, their biological functions are poorly characterized in cancers. In this study, using a newly developed tool, SomaGene, we analyze de novo somatic point mutations from the International Cancer Genome Consortium (ICGC) whole-genome sequencing data of 1,855 breast cancer s...

Background Colorectal cancer (CRC) is one of the leading causes of cancer-related deaths worldwide. Recent studies have observed causative mutations in susceptible genes related to colorectal cancer in 10 to 15% of the patients. This highlights the importance of identifying mutations for early detection of this cancer for more effective treatments...

Background: The advent of high throughput sequencing has enabled researchers to systematically evaluate the genetic variations in cancer, resulting in the identification of many cancer-associated genes. Although cancers in a same tissue are widely categorized in the same group, they demonstrate many differences among them with respect to their muta...

Background: Several types of RNA in the cell are usually involved in biological processes with multiple functions. Generally, coding RNAs translate to proteins, and non-coding ones regulate this translation in the gene regulatory networks. Some single-strand RNAs can create a circular shape via the back splicing process and convert into a new type...

We propose a novel interpretation technique to explain the behavior of structured output models, which learn mappings between an input vector to a set of output variables simultaneously. Because of the complex relationship between the computational path of output variables in structured models, a feature can affect the value of output through other...

Despite the state-of-the-art performance of deep convolutional neural networks, they are susceptible to bias and malfunction in unseen situations. The complex computation behind their reasoning is not sufficiently human-understandable to develop trust. External explainer methods have tried to interpret the network decisions in a human-understandabl...

div>FNR (Fake News Revealer): A Similarity and Transformer-Based Approach to Detect Multi-Modal Fake News in Social Media.</div

The availability and interactive nature of social media have made them the primary source of news around the globe. The popularity of social media tempts criminals to pursue their immoral intentions by producing and disseminating fake news using seductive text and misleading images. Therefore, verifying social media news and spotting fakes is cruci...

The advent of high throughput sequencing has enabled researchers to systematically evaluate the genetic variations in cancer, resulting in identifying many cancer-associated genes. Although cancers in the same tissue are widely categorized in the same group, they demonstrate many differences concerning their mutational profiles. Hence there is no “...

Solid-State Drives (SSDs) have significant performance advantages over traditional Hard Disk Drives (HDDs) such as lower latency and higher throughput. Significantly higher price per capacity and limited lifetime, however, prevents designers to completely substitute HDDs by SSDs in enterprise storage systems. SSD-based caching has recently been sug...

Graph data structures are fundamental for studying connected entities. With an increase in the number of applications where data is represented as graphs, the problem of graph generation has recently become a hot topic in many signal processing areas. However, despite its significance, conditional graph generation that creates graphs with desired f...

Disease prediction is a well-known classification problem in medical applications. Graph Convolutional Networks (GCNs) provide a powerful tool for analyzing the patients’ features relative to each other. This can be achieved by modeling the problem as a graph node classification task, where each node is a patient. Due to the nature of such medical...

This paper proposes a distributed attack detection and mitigation technique based on distributed estimation over a multi-agent network, where the agents take partial system measurements susceptible to (possible) biasing attacks. In particular, we assume that the system is not locally observable via the measurements in the direct neighborhood of any...

The increased amount of multi-modal medical data has opened the opportunities to simultaneously process various modalities such as imaging and non-imaging data to gain a comprehensive insight into the disease prediction domain. Recent studies using Graph Convolutional Networks (GCNs) provide novel semi-supervised approaches for integrating heteroge...

This paper proposes a distributed attack detection and mitigation technique based on distributed estimation over a multi-agent network, where the agents take partial system measurements susceptible to (possible) biasing attacks. In particular, we assume that the system is not locally observable via the measurements in the direct neighborhood of any...

Autoencoders have recently been widely employed to approach the novelty detection problem. Trained only on the normal data, the AE is expected to reconstruct the normal data effectively while failing to regenerate the anomalous data. Based on this assumption, one could utilize the AE for novelty detection. However, it is known that this assumption...

It is now known that at least 10% of samples with pancreatic cancers (PC) contain a causative mutation in the known susceptibility genes, suggesting the importance of identifying cancerassociated genes that carry the causative mutations in high-risk individuals for early detection of PC. In this study, we develop a statistical pipeline using a new...

Non-coding RNAs (ncRNAs) form a large portion of the mammalian genome however, their biological functions are poorly characterized in cancers. In this study, using a newly developed tool, SomaGene, we analyze de novo somatic point mutations from the International Cancer Genome Consortium (ICGC) whole-genome sequencing data of 1,855 breast cancers....

It has now known that at least 10% of samples with pancreatic cancers (PC) contain a causative mutation in the known susceptibility genes, suggesting the importance of identifying cancer-associated genes that carry the causative mutations in high-risk individuals for early detection of PC. In this study, we develop a statistical pipeline using a ne...

Solid-State Drives (SSDs) have significant performance advantages over traditional Hard Disk Drives (HDDs) such as lower latency and higher throughput. Significantly higher price per capacity and limited lifetime, however, prevents designers to completely substitute HDDs by SSDs in enterprise storage systems. In this paper, we propose RC-RNN, the f...

De novo somatic point mutations identified in breast cancer are predominantly non-coding and typically attributed to altered regulatory elements such as enhancers and promoters. However, while the non-coding RNAs (ncRNAs) form a large portion of the mammalian genome, their biological functions are mostly poorly characterized in cancers. In this stu...

Kernel based Sparse Representation Classifier (KSRC) can classify images with acceptable performance. In addition, Multiple Kernel Learning based SRC (MKL-SRC) computes the weighted sum of multiple kernels in order to construct a unified kernel while the weight of each kernel is calculated as a fixed value in the training phase. In this paper, an M...

Observability and estimation are closely tied to the system structure, which can be visualized as a system graph--a graph that captures the inter-dependencies within the state variables. For example, in social system graphs such inter-dependencies represent the social interactions of different individuals. It was recently shown that contractions, a...

We have released Sina-BERT, a language model pre-trained on BERT (Devlin et al., 2018) to address the lack of a high-quality Persian language model in the medical domain. SINA-BERT utilizes pre-training on a large-scale corpus of medical contents including formal and informal texts collected from a variety of online resources in order to improve th...

The increased amount of multi-modal medical data has opened the opportunities to simultaneously process various modalities such as imaging and non-imaging data to gain a comprehensive insight into the disease prediction domain. Recent studies using Graph Convolutional Networks (GCNs) provide novel semi-supervised approaches for integrating heteroge...

Early detection of dementia through specific biomarkers in MR images plays a critical role in developing support strategies proactively. Fazekas scale facilitates an accurate quantitative assessment of the severity of white matter lesions and hence the disease. Imaging Biomarkers of dementia are multiple and comprehensive documentation of them is t...

Disease prediction is a well-known classification problem in medical applications. Graph neural networks provide a powerful tool for analyzing the patients' features relative to each other. Recently, Graph Convolutional Networks (GCNs) have particularly been studied in the field of disease prediction. Due to the nature of such medical datasets, the...

Understanding the functionality of proteins has emerged as a critical problem in recent years due to significant roles of these macro-molecules in biological mechanisms. However, in-laboratory techniques for protein function prediction are not as efficient as methods developed and processed for protein sequencing. While more than 70 million protein...

Deep generative models have achieved great success in areas such as image, speech, and natural language processing in the past few years. Thanks to the advances in graph-based deep learning, and in particular graph representation learning, deep graph generation methods have recently emerged with new applications ranging from discovering novel molec...

Deep generative models have achieved great success in areas such as image, speech, and natural language processing in the past few years. Thanks to the advances in graph-based deep learning, and in particular graph representation learning, deep graph generation methods have recently emerged with new applications ranging from discovering novel molec...

In this paper, we study large-scale networks in terms of observability and controllability. In particular, we compare the number of unmatched nodes in two main types of Scale-Free (SF) networks: the Barabási-Albert (BA) model and the Holme-Kim (HK) model. Comparing the two models based on theory and simulation, we discuss the possible relation betw...

In this paper, we study large-scale networks in terms of observability and controllability. In particular, we compare the number of unmatched nodes in two main types of Scale-Free (SF) networks: the Barab{\'a}si-Albert (BA) model and the Holme-Kim (HK) model. Comparing the two models based on theory and simulation, we discuss the possible relation...

Recent progress in the areas of network science and control has shown a significant promise in understanding and analyzing epidemic processes. A well-known model to study epidemics processes used by both control and epidemiological research communities is the SIS (susceptible-infected-susceptible) dynamics to model the spread of disease/viruses ove...

Since late 2019, COVID-19 has been spreading over the world and caused the death of many people. The high transmission rate of the virus demands the rapid identification of infected patients to reduce the spread of the disease. The current gold-standard test, Reverse-Transcription Polymerase Chain Reaction (RT-PCR), suffers from a high rate of fals...

Motivation Single-cell RNA-sequencing (scRNA-seq) offers the opportunity to dissect heterogeneous cellular compositions and interrogate the cell-type-specific gene expression patterns across diverse conditions. However, batch effects such as laboratory conditions and individual-variability hinder their usage in cross-condition designs. Results Her...