Gavin Naylor

Verified

Gavin verified their affiliation via an institutional email.

Learn more

Verified

Gavin verified their affiliation via an institutional email.

Learn more

• Ph.D.
• Professor (Full) at University of Florida

Botiidae is a small family of freshwater fishes distributed across Southeast Asia, South Asia, and East Asia. It comprises two subfamilies: the diploid Leptobotiinae and the tetraploid Botiinae. Whether species in the Botiinae are autotetraploids or allotetraploids and how many polyploidization events occurred during the evolution of this subfamily...

Otodus megalodon (Lamniformes: Otodontidae) is an iconic Neogene shark, but the lack of well-preserved skeletons has hampered our understanding of various aspects of its biology. Here, we reassess some of its biological properties using a new approach, based on known vertebral specimens of O. megalodon and 165 species of extinct and extant neoselac...

While sex-determining mechanisms have been extensively characterized in many vertebrates, they have not been explored in chondrichthyan fishes until relatively recently. In the present study, we used high-quality whole genome reference assemblies to examine the putative sex chromosomes of 14 elasmobranch species spanning nine orders. We describe fo...

The Thorny Skate (Amblyraja radiata) is a vulnerable species displaying a discrete size-polymorphism in the northwest Atlantic Ocean (NWA). We conducted whole genome sequencing of samples collected across its range. Genetic diversity was similar at all sampled sites, but we discovered a ~ 31 megabase bi-allelic supergene associated with the size po...

The first molecular-assisted assessment of shark and batoid taxonomy in the waters of south-eastern Arabia was undertaken almost a decade ago, at a time when many species lineages lacked clear resolution. Consequently, only tentative identifications could be offered in some cases. There has been a considerable amount of focus on elasmobranch taxono...

Fishes in the cypriniform family Catostomidae (suckers) are evolutionary tetraploids. The use of nuclear markers in the phylogenetic study of this important group has been greatly hindered by the challenge of identifying paralogous copies of genes. In the present study, we used two different methods to separate the gene copies of five single-copy n...

The increased availability of reference genome assemblies of sharks and rays has contributed greatly to our understanding of their biology, including their sex-determination mechanisms. However, several publicly available genome assemblies of sharks and rays appear to be missing information about the sex of the source individuals. This can confound...

In the current genomic era, palaeontology remains crucial for understanding macroevolutionary patterns and dynamics. Despite a relatively rich fossil record, the early evolution of lamniform sharks, a group including iconic predators like the white shark and the extinct †Otodus megalodon, remains poorly understood due to the scarcity of complete fo...

Biodiversity, Taxonomy, and Systematics of extant Chondrichthyan Fishes

The magnificent catshark Proscyllium magnificum was described in 2004 based off five specimens collected in the Andaman Sea off Myanmar. It was originally allocated to the genus Proscyllium, but recent molecular analyses suggested it was more closely related to the harlequin catshark Ctenacis fehlmanni from the western Indian Ocean. This study inco...

Leptocharias smithii has been poorly explored in anatomical terms. This species bears a mosaic of morphological characters and is considered to represent an intermediate condition between other carcharhiniform clades. In the present paper, the anatomy of the appendicular skeleton of the species is thoroughly investigated and compared with other rep...

The neurocranium (braincase) is one of the defining vertebrate characters. Housing the brain and other key sensory organs, articulating with the jaws and contributing to the shape of the anteriormost portion of the body, the braincase is undoubtedly of great functional importance. Through studying relationships between braincase shape and ecology w...

Sawfishes (Pristidae) are large, highly threatened rays named for their tooth‐studded rostrum, which is used for prey sensing and capture. Of all five species, the smalltooth sawfish, Pristis pectinata, has experienced the greatest decline in range, currently found in only ~20% of its historic range. To better understand the genetic underpinnings o...

The genus Dichichthys was resurrected for five species previously allocated to the genus Parmaturus in the family Pentanchidae. Supraorbital crests on the chondrocranium distinguish Dichichthys from Parmaturus and other members of the family Pentanchidae. A new family, Dichichthyidae, has been proposed to contain Dichichthys. The sequence of the NA...

The neurocranium (braincase) is one of the defining vertebrate characters. Housing the brain and other key sensory organs, articulating with the jaws and contributing to the shape of the anteriormost portion of the body, the braincase is undoubtedly of great functional importance. Through studying relationships between braincase shape and ecology w...

Understanding the relationship between census size, recent demography and genetic diversity is central for effective conservation and management of threatened species. Thorny skate (Amblyraja radiata) biomass in the northwest Atlantic has declined significantly in the past 50 years, prompting strict conservation measures . Curiously, population rec...

Stingrays genus Hypanus currently encompasses nine valid species from the Atlantic and Pacific oceans, though the phylogenetic relationships amongst some of them were based on a single mitochondrial gene and did not involve all putative Hypanus species. To address the monophyly of the genus and its relationship to other Dasyatinae genera, we sequen...

Management of thorny skate (Amblyraja radiata) in the Northwest Atlantic has posed a conservation dilemma for several decades due to the species' lack of response to strong conservation efforts in the US Gulf of Maine and the Canadian Scotian Shelf, confusion over the relationship between two reproductive size morphs of differing life histories tha...

The megatooth shark, †Otodus megalodon, which likely reached at least 15 m in total length, is an iconic extinct shark represented primarily by its gigantic teeth in the Neogene fossil record. As one of the largest marine carnivores to ever exist, under�standing the biology, evolution, and extinction of †O. megalodon is important because it had a s...

Members of the genus Brevitrygon are small, locally abundant tropical stingrays (family Dasyatidae) occurring in soft sedimentary habitats of inner continental shelves of the Indo-West Pacific from the Red Sea to Indonesia. Formerly members of the genus Himantura, whose members lack dorsal and ventral skin folds on the tail (typical of most dasyati...

Aim Biogeographic boundaries and genetic structuring have important effects on the inferences and interpretation of effective population size (Ne) temporal variations, a key genetics parameter. We reconstructed the historical demography and divergence history of a vulnerable coastal high‐trophic shark using population genomics and assessed our abil...

Sharks occupy diverse ecological niches and play critical roles in marine ecosystems, often acting as apex predators. They are considered a slow-evolving lineage and have been suggested to exhibit exceptionally low cancer rates. These two features could be explained by a low nuclear mutation rate. Here, we provide a direct estimate of the nuclear m...

Background The hammerhead sharks (family Sphyrnidae) are an immediately recognizable group of sharks due to their unique head shape. Though there has long been an interest in hammerhead development, there are currently no explicit staging tables published for any members of the group. The bonnethead Sphyrna tiburo is the smallest member of Sphyrnid...

Elasmobranchii are a relatively well-studied group. However, numerous phylogenetic uncertainties about their relationships remain un-answered. Recently, molecular analyses have shifted long-standing conceptions regarding their taxonomic and phylogenetic relationships. Here, we revisit the phylogenetic evidence based on a detailed morphological re-e...

Marine biodiversity loss is accelerating, leading to the elevated extinction risks of many species, including sharks and rays. To mitigate these losses, information on their distribution and community composition is needed. Monitoring these (often) mobile species is challenging, especially in remote, highly dynamic and turbid coastal areas. Here, w...

A new species of hornshark is described from northwestern Australia based on six whole specimens and a single egg case. Heterodontus marshallae n. sp. was previously considered to be conspecific with H. zebra from the Western Pacific. The new species differs from H. zebra in the sequence of its NADH2 gene, several morphological characters, egg case...

Simple Summary Angel sharks (genus Squatina) are small- to medium-sized sharks with flattened bodies, that live on the seafloor. Until now, 23 valid species of angel sharks have been identified around the world, of which over half are thought to be facing a moderate to severe risk of extinction. Several juvenile angel sharks were collected by resea...

Abstract The Bull Shark (Carcharhinus leucas) faces varying levels of exploitation around the world due to its coastal distribution. Information regarding population connectivity is crucial to evaluate its conservation status and local fishing impacts. In this study, we sampled 922 putative Bull Sharks from 19 locations in the first global assessme...

The Late Jurassic elasmobranch Protospinax annectans is often regarded as a key species to our understanding of crown group elasmobranch interrelationships and the evolutionary history of this group. However, since its first description more than 100 years ago, its phylogenetic position within the Elasmobranchii (sharks and rays) has proven controv...

Sawfishes (Pristidae) are large, highly threatened rays named for their tooth-studded rostrum, which is used for prey sensing and capture. Of all five species, the smalltooth sawfish, Pristis pectinata, has experienced the greatest decline in range, currently found in only ~20% of its historic range. To better understand the genetic underpinnings o...

Longnose skates have great economic importance in South American fisheries, and in order to preserve them it is important to have a well-defined taxonomic status of their species. Dipturus lamillai was recently described for Malvinas Islands waters based on morphological and molecular comparisons with Zearaja chilensis. Although D. lamillai has bee...

Since its original description in the early 20th century, the phylogenetic position of the Late Jurassic elasmobranch Protospinax annectans has been heavily debated and it was suggested that this fossil fish represented either a stem group batoid (rays and skates), a stem group elasmobranch (sharks, skates, and rays), a crown group batoid, a stem g...

Understanding the population structure of a species is important to accurately assess its conservation status and manage the risk of local extinction. The Bull Shark ( Carcharhinus leucas ) faces varying levels of exploitation around the world due to its coastal distribution. Information regarding population connectivity is crucial to evaluate its...

Elasmobranchs are characterised by the presence of placoid scales on their skin. These scales, structurally homologous to gnathostome teeth, are thought to have various ecological functions related to drag reduction, predator defense or abrasion reduction. Some scales, particularly those present in the ventral area, are also thought to be functiona...

Etmopteridae (lantern sharks) is the most species-rich family of sharks, comprising more than 50 species. Many species are described from few individuals, and re-collection of specimens is often hindered by the remoteness of their sampling sites. For taxonomic studies, comparative morphological analysis of type specimens housed in natural history c...

Centrophorus uyato (Rafinesque, 1810) has a complicated nomenclatural history which has led to multiple scientific names being ascribed to this species. In the Mediterranean Sea, and elsewhere in its range, this species was previously referred to as C. granulosus (Bloch & Schneider, 1801). The first paper in this revision series clarified that C. g...

Elasmobranchii are relatively well-studied. However, numerous phylogenetic uncertainties about their relationships remain. Here, we revisit the phylogenetic evidence based on a detailed morphological re-evaluation of all the major extant batomorph clades (skates and rays), including several holomorphic fossil taxa from the Palaeozoic, Mesozoic and...

Herein we report an unprovoked shark attack on a scuba diver in New Caledonia. The species responsible for the attack was identified as a tiger shark (Galeocerdo cuvier), based on both the victim’s testimony and forensic examination. The victim suffered significant loss of soft tissues from one thigh, which resulted in hemorrhagic shock. Even thoug...

Aim To examine the support of two ecological diversity theories- The Ecological Limits Hypothesis (ELH) and the Niche Conservatism Hypothesis (NCH) - in explaining patterns of global shark diversity. Location Global scale and two ecological realms: the Tropical Atlantic and the Central Indo-Pacific. Time Period Past 100 years Major Taxa Studied...

Previous examination of the mitochondrial NADH2 gene and morphological characteristics led to the resurrection of Scoliodon macrorhynchos as a second valid species in the genus, in addition to S. laticaudus. This study applied an integrated taxonomic approach to revisit the classification of the genus Scoliodon based on new materials from the Malay...

Sibert and Rubin (Reports, 4 June 2021, p. 1105) report an early Miocene extinction in pelagic sharks based on the loss of shark denticle diversity in two widely separated deep-sea sediment cores. We assert that the pattern observed is not a consequence of extinction but results from shifting species ranges induced by global current reorganization.

The following supplementary files are included: 1. Figure legends for supplementary figures 2. Fig. S1 Full timetree.pdf 3. Fig. S2. Relationships among five tribes.pdf 4. Table S1. Sample information of the three nuclear datasets 5. Table S2. Sample information of the mitochondrial dataset

Despite the rarity of polyploidy in animals, some groups with polyploid species exhibit complicated and interesting patterns of reticulate evolution. Here we focus on fishes in the subfamily Cyprininae, the largest polyploid group of vertebrates. The large number of polyploid taxa poses significant challenges for phylogenetic and evolutionary studi...

After initial detection of target archival DNA of a 116-year-old syntype specimen of the smooth lantern shark, Etmopterus pusillus , in a single-stranded DNA library, we shotgun-sequenced additional 9 million reads from this same DNA library. Sequencing reads were used for extracting mitochondrial sequence information for analyses of mitochondrial...

We here re-evaluate the skeletal anatomy and the systematic position of the two Eocene guitarfish species represented by almost complete and articulated material from the Konservat-Lagerstätten of Bolca in Italy. The analyses of morphometric, skeletal and dental features of 'Rhinobatos' dezignii and 'R.' primaevus allow them to be excluded from the...

The species of Mustelus Linck, 1790 occurring in the northern Indian Ocean are revised and a new species, Mustelus andamanensis sp. nov., is formally described. Previously considered to be conspecific with M. mosis Hemprich & Ehrenberg, 1899, the new species is currently only known from the Andaman Sea. The Red Sea and Arabian Sea populations of Mu...

High-quality and complete reference genome assemblies are fundamental for the application of genomics to biology, disease, and biodiversity conservation. However, such assemblies are available for only a few non-microbial species1–4. To address this issue, the international Genome 10K (G10K) consortium5,6 has worked over a five-year period to evalu...

Chimaera compacta sp. nov., a new species of shortnose chimaera (Holocephali: Chimaeriformes: Chimaeridae), is described from a single specimen collected at 595–655 m depth, off Amsterdam Island, in the southern Indian Ocean. The species is easily distinguished from its congeners by the combination of the following characters: massive head with sho...

The dark-mouth skate, Raja arctowskii Dollo, 1904 from Antarctic waters is an extraordinary case in skate taxonomy. For more than 100 years, this species has been known only from three empty egg capsules and the species as such has remained undescribed due to the lack of specimens that could be assigned to Dollo’s small capsules. Since trawled egg...

In this paper we re-examine the taxonomy and systematic position of the Eocene stingrays from Bolca Lagerstätte which are traditionally assigned to Urolophus crassicaudatus (Blainville). The analysis of their tooth morphology supports an assignment to the Eocene stingray genus Arechia Cappetta, a taxon known from isolated teeth from the Ypresian-Lu...

An integrative approach by the congruence of genetics, morphology and ecological niche modelling (ENM) was used to delimit a new species of Hypanus (Rafinesque, 1818), a recently resurrected genus of marine stingrays comprising eight species, five of which occur in the western Atlantic. The species with the widest distribution, Hypanus americanus (...

A new stingray, Hemitrygon yemenensis sp. nov., is described from old preserved material collected on the Arabian Sea coast of eastern Yemen. Consistent with other members of the genus, H. yemenensis sp. nov. is a small dasyatid (males mature at ~22 cm disc width), but it is the only Hemitrygon known to occur outside the western Pacific and eastern...

The fossil-Lagerstatte of Bolca (Italy) is well known for the diversity and exquisite preservation of its bony and cartilaginous fishes documenting tropical shallow-water marine environments associated with coral reefs in the western Tethys during the early Eocene. In this study, the taxonomic, systematic and phylogenetic position of two batoid spe...

High-quality and complete reference genome assemblies are fundamental for the application of genomics to biology, disease, and biodiversity conservation. However, such assemblies are only available for a few non-microbial species. To address this issue, the international Genome 10K (G10K) consortium has worked over a five-year period to evaluate an...

The White Shark (Carcharodon carcharias) is a top predator cosmopolitanly distributed and heavily protected worldwide. Identification and information pertaining to White Shark nursery areas is limited yet crucial for the protection of sharks during their most vulnerable life stages. Here, we present morphometric, skeletal, and haplotypic characteri...

It can be challenging to identify the forces that drive speciation in marine environments for organisms that are capable of widespread dispersal because their contemporary distributions often belie the historical processes that were responsible for their initial diversification. In this contribution we explore the likely sequence of events responsi...

In the last few years, the detailed revision of the Eocene cartilaginous fishes (Chondrichthyes) from the Bolca Lagerstätte (Italy) has provided new insights into the fish biodiversity of the western Tethys. The morphological analysis of three previously undescribed specimens from the Pesciara deposit of Bolca revealed the existence of a new stingr...

The elasmobranch bycatch of the Gulf of Papua Prawn Fishery is investigated in detail for the first time. Fisheries observers collected data on the elasmobranch bycatch from a total of 403 trawl sets (1,273 hrs) in the Gulf of Papua. A total of 40 species of elasmobranchs were recorded ranging in size from a 12 cm disc width stingray to a 350 cm to...

A new species of kitefin shark (Squaliformes; Dalatiidae) is described from the Gulf of Mexico (Western North Atlantic Ocean) based on five diagnostic features not seen on the only other known Mollisquama specimen, the holotype of Mollisquama parini Dolganov which was captured in the Eastern South Pacific Ocean. The new species, Mollisquama mississ...

Background End-Cretaceous niche-filling by benthic Mesozoic survivors resulted in a prominent increase of durophagous fish families, resulting in the appearance of the earliest representatives of several extant fish lineages, including the pelagic durophagous stingrays, a monophyletic clade of myliobatiform batoids that is characterized by a derive...

The Eocene whiptail stingrays of the family Dasyatidae from the Bolca Lagerstätte, NE Italy, are revised herein in detail. The analysis of the anatomical and morphometric features allows us to identify the species “Dasyatis” zigni (Molin, 1861) as a junior synonym of “D.” muricatus (Volta, 1796), and to assign it to the new genus Tethytrygon gen. n...

A new species of guitarfish, Rhinobatos ranongensis sp. nov., is described from 5 preserved specimens, and images and tissue samples of additional material, collected from the Andaman Sea and Bay of Bengal. This species co-occurs in the eastern sector of the northern Indian Ocean with two poorly defined congeners, R. annandalei Norman and R. lionot...

In May 2019 a female specimen of Rhynchobatus cooki was found at Jurong Fishery Port in Singapore. The specimen had been imported from Indonesia. The species had not been seen for over 20 years, and this discovery gives hope that Rhynchobatus cooki is not yet extinct.

The evolutionary history of species is a dynamic process as they modify, expand, and contract their spatial distributions over time. Range expansions (REs) occur through a series of founder events that are followed by migration among neighboring demes. The process usually results in structured metapopulations and leaves a distinct signature in the...

In this paper we combine analyses of satellite telemetry and molecular data to investigate spatial connectivity and genetic structure among populations of shortfin mako (Isurus oxyrinchus) in and around Australian waters, where this species is taken in recreational and commercial fisheries. Mitochondrial DNA data suggest matrilineal substructure ac...

The use of genome-scale data to infer phylogenetic relationships has gained in popularity in recent years due to the progress made in target-gene capture and sequencing techniques. Data filtering, the approach of excluding data inconsistent with the model from analyses, presumably could alleviate problems caused by systematic errors in phylogenetic...

Dalatiid sharks are members of a family of predominantly small, midwater meso‐ and bathypelagic chondrichthyans. The family is notable for both its number of monotypic genera and high morphological disparity. Three of the seven dalatiid genera are known only from holotype specimens (Mollisquama parini) or from only a handful of specimens (Euprotomi...

An integrated taxonomic approach, combining both morphological and molecular data, was adopted to investigate the Hydrolagus lemures-ogilbyi group in the Indo-Australian region. Single mitochondrial markers (CO1 and NADH2) provided evidence supporting the separation of four distinct species in this group. However, detailed morphological data collec...

Species identification using DNA sequences, known as DNA barcoding has been widely used in many applied fields. Current barcoding methods are usually based on a single mitochondrial locus, such as cytochrome c oxidase subunit I (COI). This type of barcoding method does not always work when applied to species separated by short divergence times or t...