Frutos Carlos Marhuenda Egea

• Biochemistry
• Professor (Full) at University of Alicante

The increasing frequency of fish escapes from aquaculture facilities poses ecological, economic, and traceability challenges. This study investigates the potential of heavy metals, fatty acid profiles, and NMR-based metabolomics to distinguish between wild, cultured, and escaped individuals of three Mediterranean fish species: Sparus aurata (gilthe...

In this study, several composting strategies such as the use of semipermeable geotextile covers and biochar as an additive were investigated to improve olive mill wastewater (OMW) biodegradability and mitigate greenhouse gas (GHG) emissions during industrial-scale composting. In addition, the final characteristics of the compost obtained and its ma...

Background/Objectives: This study explores the metabolic adaptations and quality differences between wild and farmed gilthead seabream (Sparus aurata), with a particular focus on lipid composition and metabolite profiles. These differences are examined in the context of varying environmental conditions, feeding regimes, and post-harvest processes....

Background/Objectives: This study explores the metabolic adaptations and quality differences between wild and farmed gilthead seabream (Sparus aurata), with a particular focus on lipid composition and metabolite profiles. These differences are examined in the context of varying environmental conditions, feeding regimes, and post-harvest processes....

The COVID-19 pandemic, caused by the SARS-CoV-2 virus, has spurred an extraordinary scientific effort to better understand the disease’s pathophysiology and develop diagnostic and prognostic tools to guide more precise and effective clinical management. Among the biological samples analyzed for biomarker identification, urine stands out due to its...

Alterations in metabolism caused by SARS-CoV-2 infection have been highlighted in various investigations and have been used to search for biomarkers in different biological matrices. However, the selected biomarkers vary greatly across studies. Our objective is to provide a robust selection of biomarkers, including results from different sample tre...

In this study, the biodegradation properties of leather treated with various finishing chemicals were evaluated in order to enhance the sustainability of leather processing. We applied advanced analytical techniques, including FT-IR, thermogravimetric analysis (TGA), and solid-state NMR spectroscopy. Leather samples treated with different polymers,...

In this study, the biodegradation properties of leather treated with various finishing chemicals were evaluated in order to enhance the sustainability of leather processing. We applied advanced analytical techniques including FT-IR, thermogravimetric analysis (TGA), and solid-state NMR spectroscopy. Leather samples treated with different polymers,...

During adverse atmospheric events, enormous damage can occur at marine aquaculture facilities, as was the case during Storm Gloria in the southeastern Spanish Mediterranean in January 2020, with massive fish escapes. Fishes that escape were caught by professional fishermen. The objective of this study was to identify biomarkers in fish that enable...

Composting is described as a sustainable alternative to organic waste reuse from the agricultural and household sectors. The organic matter degradation and stabilization product presents great variability due to the waste composition used. Thus, the use of techniques that allow the monitoring of the decomposition process is necessary to determine t...

This work evaluates the effect of agricultural plastic waste (APW) in two particle sizes, microplastic and film debris, and subjected to a pre-treatment by exposure to UV-C, in the development of the vermicomposting process. Eisenia fetida health status and metabolic response and the vermicompost quality and enzymatic activity were determined. The...

Background: Since the state of alarm was declared due to the COVID-19 pandemic, hospitals have been the main ones in charge of registering the therapeutic follow-up of affected people. The analysis of these data has allowed those different biochemical markers have been identified as predictors of the severity of the disease, but most of the publis...

Analysis of urine samples from COVID-19 patients by 1H NMR reveals important metabolic alterations due to SAR-CoV-2 infection. Previous studies have identified biomarkers in urine that reflect metabolic alterations in COVID-19 patients. We have used 1H NMR to better define these metabolic alterations since this technique allows us to obtain a broad...

Nowadays, plastic materials are extensively used in the agri-food sector for multiple purposes. The end-of-life management of these plastics is an environmental challenge because frequent incomplete recoveries after the crop seasons lead to the accumulation of plastics debris in agricultural waste, which is now recognized as an emerging environment...

The entomopathogenic fungus Beauveria bassiana (Bb) is used to control the red palm weevil (RPW) Rhyncophorus ferrugineus (Oliver). Beuveria bassiana can infect and kill all developmental stages of RPW. We found that a solid formulate of B. bassiana isolate 203 (Bb203; CBS 121097), obtained from naturally infected RPW adults, repels RPW females. Fu...

Analysis of urine samples from COVID-19 patients by ¹ H NMR reveals important metabolic alterations due to SAR-CoV-2 infection. To detect these alterations, we have compared urine samples from COVID-19 patients with healthy people. We have used unsupervised (Robust PCA) and supervised (PLS-LDA) multivariate analysis methods. The generated mathemati...

The global consumption of plastic is growing year by year, producing small plastic pieces known as microplastics (MPs) that adversely affect ecosystems. The use of organic amendments (compost and manure) polluted with MPs affects the quality of agricultural soils, and these MPs can be incorporated into the food chain and negatively impact human hea...

The agri-food industry is at the centre of the circular economy, since the co-composting of its residual flows allows their management and adds value producing fertilisers. In this work, six composting piles were prepared combining agri-food sludge (AS), different fresh vegetable wastes (pepper waste (P), tomato waste (T), and leek waste (L), and,...

In this work, we use electrophysiological and metabolomic tools to determine the role of chitosan as plant defense elicitor in soil for preventing or manage root pests and diseases sustainably. Root exudates include a wide variety of molecules that plants and root microbiota use to communicate in the rhizosphere. Tomato plants were treated with chi...

In this work, we use electrophysiological and metabolomic tools to determine the role of chitosan as plant defence elicitor in soil for preventing or manage root pests and diseases sustainably. Root exudates include a wide variety of molecules that plants and root microbiota use to communicate in the rhizosphere. Tomato plants were treated with chi...

The aim of this study was to evaluate the effect of considering different composting times on compost quality before the end of the bio-oxidative phase and after the maturation and storage phases. This study may provide useful information to optimize the composting process and increase the economic feasibility of the technology and its adoption wit...

This work evaluates several co-composting scenarios based on the use of Arundo donax biomass (AD) as bulking agent for the co-composting of sewage sludge (MS) and agri-food sludge (AS), to manage these organic wastes and to produce balanced organic fertilizers by optimizing the process. For this, six piles were prepared in commercial composting con...

In the Mediterranean countries, there is an increasing production of date palm wastes (Phoenix dactylifera L.), not only due to the raising production of date palm fruits, but also derived from the maintenance of urban and peri-urban green areas, especially in those affected by red palm weevil (Rhynchophorus ferrugineus). The management of this inc...

Metabolomics is the study of metabolites, small biomolecules (carbohydrates, lipids, amino acids and organic acids) present in a biological sample. Metabolomics tools include chromatography for separating metabolites and spectroscopy techniques for their identification. Metabolomics tools have allowed to analyze the composition of tomato root exuda...

Currently, the management of urban waste streams in developing countries is not optimized yet, and in many cases these wastes are disposed untreated in open dumps. This fact causes serious environmental and health problems due to the presence of contaminants and pathogens. Frequently, the use of specific low-cost strategies reduces the total amount...

None of the health claims about pomegranate juices has been approved yet by European Food Safety Authority (EFSA). There is a general perception among consumers that organic foods are healthier, tastier, and more nutritive than the conventional products. The aim of this research was to study the differences in the biological activity between ready-...

In this work, different analytical techniques (thermal analysis, 13C cross-polarization magic angle spinning (CPMAS) NMR and Fourier transform infrared (FT-IR) spectroscopy) have been used to study the organic matter changes during the co-composting of pig slurry with cotton gin waste. To ensure the validity of the findings, the composting process...

The potential of cantabrian anchovy (Engraulis encrarischolus) viscera as a source of bioactive compounds is of interest for both, pharmaceutical and food industries. Cantabrian anchovy guts and heads were freeze-dried, extracted with methanol and subjected to fractionation by solvent partitioning using hexane, ethyl acetate, and butanol. Fractions...

Phytophthora root rot caused by Phytophthora nicotianae is an economically important disease in pepper crops. The use of suppressive composts is a low environmental impact method for its control. Although attempts have been made to reveal the relationship between microbiota and compost suppressiveness, little is known about the microorganisms assoc...

The growth of the agri-food industry has resulted in a strong increase in its sludge generation. This type of waste is often produced in high amounts, concentrated in certain areas, and shows characteristics similar to those of municipal sewage sludge (except for the absence of heavy metals). Composting has been widely studied as a viable alternati...

A metabolomics approach was used to analyze effects of salmon farming on wild saithe (Pollachius virens) populations. Saithe fish were captured at two salmon farms and at two control locations around the island Hitra, Norway. At each location the fish were captured with either benthic gillnets and automatic jigging machines. Changes in diet seem to...

The objective of this work was to study the co-composting process of wastes from the winery and distillery industry with animal manures, using the classical chemical methods traditionally used in composting studies together with advanced instrumental methods (thermal analysis, FT-IR and CPMAS 13C NMR techniques), to evaluate the development of the...

The management of biodegradable wastes is increasing, including the use of waste as a source of energy. Anaerobic digestion involves organic-matter decomposition under anoxic conditions by a microbial consortium, obtaining a source of renewable energy (biogas), mainly constituted of a mixture of carbon dioxide (CO2, 25–45 percent), methane (CH4, 55...

The aim of the present paper was to show the possibilities of chemometric tools and of the parallel factor analysis (PARAFAC) model, to understand the complexities of the fluorescence emission-excitation matrix (EEM) of water soluble organic matter (WSOM) extracted from sewage sludge samples obtained with different origin and stabilisation procedur...

Saithe Pollachius virens are attracted to uneaten salmon feed underneath cages at open‐cage salmon farms in Norway. The aggregated Saithe have modified their feeding habits as they have switched from wild prey to uneaten food pellets, which could lead to physiological and biochemical changes in the Saithe. Variations in profiles of total lipids, fa...

A combined chemometrics-metabolomics approach [excitation–emission matrix (EEM) fluorescence spectroscopy, nuclear magnetic resonance (NMR) and high performance liquid chromatography–mass spectrometry (HPLC–MS)] was used to analyse the rhizodeposition of the tritrophic system: tomato, the plant-parasitic nematode Meloidogyne javanica and the nemato...

Sewage sludge application to agricultural soils is a common practice in several countries in the European Union. Nevertheless, the application dose constitutes an essential aspect that must be taken into account in order to minimize environmental impacts. In this study, near infrared reflectance spectroscopy (NIRS) was used to estimate in sewage sl...

The search of metabolites which are present in biological samples and the comparison between different samples, allow the construction of certain biochemical patterns. The Mass Spectrometry (MS) methodology applied to the analysis of biological samples makes it possible the identification of many metabolites. Each obtained signal (m/z) is character...

We present here a new metabolomic methodology to predict embryo implantation ability in in vitro fertilization (IVF). In the present study we have included a total of 23 patients scheduled for IVF. Embryos were selected to be transferred by using morphological criteria on day 3 of in vitro culture. The relative amino acid concentrations in the embr...

We present a new methodology to predict embryo viability in assisted reproductive technology (ART) treatments by determining the relative amino acid concentrations in human embryo culture medium on day 3, using high-performance liquid chromatography with mass spectroscopy analysis without derivatization. The model was performed with soft independen...

The aim of the present paper is to evaluate the changes of organic matter during the composting process of fresh winery and distillery residues (WDR) by means of classical and chemometric analysis of (13)C cross-polarization magic angle spinning (CPMAS) NMR and Fourier transform infrared (FT-IR) spectra. (13)C NMR spectroscopy displayed a preferent...

The content and chemical forms of P in compost are essential variables for its proper management with an agricultural purpose, especially considering the increasing P over-fertilization in agrosystems. In this study, the estimation of P content and dynamics in different composting scenarios was developed using near infrared reflectance spectroscopy...

The haloarchaeon Haloferax mediterranei is able to assimilate nitrate or nitrite using the assimilatory nitrate pathway. An assimilatory nitrate reductase (Nas) and an assimilatory nitrite reductase (NiR) catalyze the first and second reactions, respectively. The genes involved in this process are transcribed as two messengers, one polycistronic (n...

Reverse micelles were used as a cytoplasmic model to study the kinetics of an extreme halophilic enzyme such as the recombinant glucose dehydrogenase from the Archaeon Haloferax mediterranei. This enzyme was solubilized in reverse micelles of hexadecyltrimethylammoniumbromide in cyclohexane, with 1-butanol as co-surfactant. Glucose dehydrogenase re...

Dioxin and furans (PCDD/Fs) are released into the environment from many possible sources, including incineration, industrial processes, and internal combustion engines. The PCDD/Fs have been identified as agents responsible for many toxic responses in exposed individuals, including cancer and developmental/reproductive dysfunctions. Because of thei...

The intensification in livestock production has increased the need of efficient treatments of waste streams especially to preserve as much as possible, the nutrients into the soil-plant system. Composting is a cheap, efficient and sustainable treatment for solid wastes that is always included in any manure treatment scenario. In this paper, an over...

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The aim of this work was to study the viability of recycling the solid wastes generated by the winery and distillery industry by means of co-composting with animal manures, as well as to evaluate the quality of the composts obtained. Two piles, using exhausted grape marc and cattle manure or poultry manure, respectively (at ratios, on a fresh weigh...

The authors espetially thanks to Ediciones MUNDI-PRENSA by the authorization to include this archive of the published book, in the Institutional Repository DIGITAL CSIC https://digital.csic.es RED ESPAÑOLA DE COMPOSTAJE (REC) (SPANISH COMPOSTING NETWORK) funded by the Spanish Ministery of Science and Innovation as well as the Ministery of Environme...

Physiology, regulation and biochemical aspects of the nitrogen assimilation are well known in Prokarya or Eukarya but they are poorly described in Archaea domain. The haloarchaeon Haloferax mediterranei can use different nitrogen inorganic sources (NO (3) (-) , NO (2) (-) or NH (4) (+) ) for growth. Different approaches were considered to study the...

The aim of the present paper is to assess the maturity degree reached by different samples of several mixtures from winery and distillery residues composted using the Rutgers composting system, by means of excitation-emission matrix (EEM) fluorescence spectroscopy. The composts were sampled once a week for about 200d. EEM spectra indicate the prese...

The possibility of using thermal analysis for a quick characterization of chemical changes was tested in the organic matter from composting materials. Differential thermal analysis (DTA), thermogravimetry (TG) and the first derivative of the TG (DTG) were calculated in oxidizing conditions on compost samples obtained from three composting piles. Th...

Póster presentado en el XXIX Congreso de la Sociedad Española de Biología Molecular, Elche, 7-10 Septiembre 2006.

Póster presentado en la III Bienal del Grupo Español de Resonancia Magnética Nuclear, San Juan (Alicante), 15-18 Octubre 2006.

Sequencing a 6,720-bp segment of the extreme halophilic archaeon Haloferax mediterranei genome has revealed the genomic organization of the putative structural genes for nitrate assimilation. We report a gene operon containing nasABC and nasD gene. nasA encodes an assimilatory nitrate reductase, nasB codes for a membrane protein with similarity to...

The Haloferax mediterranei nar operon has been sequenced and its regulation has been characterized at transcriptional level. The nar operon encodes seven open reading frames(ORFs) (ORF1 narB, narC, ORF4, narG, narH, ORF7 and narJ). ORF1, ORF4 and ORF7 are open reading frames with no assigned function, however the rest of them encoded different prot...

Nitrate is an important inorganic nitrogen source for plants and microorganisms. The physiology, enzymology and genetics of nitrate assimilation have been well studied in plants and bacteria (Campbell 1996; Lin and Stewart 1998); nonetheless, little is known at the biochemical, genetic or structural level of this process in halophilic Archaea. Nitr...

Haloferax mediterranei is a halophilic archaeon that can grow in aerobic conditions with nitrate as sole nitrogen source. The electron donor in the aerobic nitrate reduction to ammonium was a ferredoxin. This ferredoxin has been purified and characterised. Air-oxidized H. mediterranei ferredoxin has a UV-visible absorption spectra typical of 2Fe-ty...

The halophilic archaeon Haloferax mediterranei is able to grow in a minimal medium containing ammonium acetate as a carbon and nitrogen source. When this medium is enriched with starch, alpha-amylase activity is excreted to the medium in low concentration. Here we report methods to concentrate and purify the enzyme. The relative molecular mass of t...

The stability of malate dehydrogenase (hMDH) from Halobacterium salinarum in aqueous medium at low salt concentrations (1 and 0.5 M NaCl) was studied at 4 degrees and 25 degrees C. The results showed that hMDH was more stable at the higher salt concentration and the low temperature. hMDH was introduced into reverse micelles of hexadecyltrimethylamm...

Alkaline p-nitrophenylphosphate phosphatase (pNPPase) from the halophilic archaeobacterium Halobacterium salinarum (previously halobium) was solubilized at low salt concentration in reverse micelles of hexadecyltrimethyl-ammoniumbromide in cyclohexane with 1-butanol as co-surfactant. The enzyme maintained its catalytic properties under these condit...

The use of halophilic extremozymes in organic media has been limited by the lack of enzymological studies in these media. To explore the behaviour of these extremozymes in organic media, different approaches have been adopted, including the dispersal of the lyophilised enzyme or the use of reverse micelles. The use of reverse micelles in maintainin...

Enzymes suspended in organic solvents represent a versatile system for studying the involvement of water in catalytic properties and their flexibility in adapting to different environmental conditions. The extremely halophilic alkaline p-nitrophenylphosphate phosphatase from the archaeon Halobacterium salinarum was solubilized in an organic medium...

A putative partner of the already characterized CopZ from Bacillus subtilis was found, both proteins being encoded by genes located in the same operon. This new protein is highly homologous to eukaryotic and prokaryotic P-type ATPases such as CopA, Ccc2 and Menkes proteins. The N-terminal region of this protein contains two soluble domains constitu...

Possible biotechnological applications of extreme halophilic enzymes are strongly determined by their high salt requirement of around 4 M NaCl. Consequently, the use of these in organic media seemed to be unlikely. However, we have succeeded in dissolving a halophilic enzyme, p-nitrophenylphosphate phosphatase from the archaeon Halobacterium salina...

Haloferax mediterranei can use nitrate as sole nitrogen source during aerobic growth. We report here the purification and biochemical characterisation of the assimilatory nitrate reductase (EC 1.6.6.2) from H. mediterranei. The enzyme, as isolated, was composed of two subunits (105+/-1.3 kDa and 50+/-1.3 kDa) and behaved as a dimer during gel filtr...

Haloferax mediterranei can use nitrate as sole nitrogen source during aerobic growth. We report here the purification and biochemical characterisation of the assimilatory nitrate reductase (EC 1.6.6.2) from H. mediterranei. The enzyme, as isolated, was composed of two subunits (105±1.3 kDa and 50±1.3 kDa) and behaved as a dimer during gel filtratio...

Reversed micelles were used as a cytoplasmic model to study the effect of the multi-ionic equilibria on kinetics of extreme halophilic enzymes. The enzymatic system used was an alkaline p-nitrophenylphosphate phosphatase from the halophilic archaeon Halobacterium salinarum (earlier halobium). This enzyme was solubilised in reversed micelles of hexa...

Alkaline p-nitrophenylphosphate phosphatase from the halophilic archaeon Halobacterium salinarum (earlier halobium) was solubilised in organic medium using reversed micelles of hexadecyltrimethylammonium bromide in cyclohexane, with 1-butanol as co-surfactant. The stability of alkaline p-nitrophenylphosphate phosphatase in this system was studied a...

Reversed micelles were used as a cytoplasmic model to study the effect of the multi-ionic equilibria on kinetics of extreme halophilic enzymes. The enzymatic system used was an alkaline p-nitrophenylphosphate phosphatase from the halophilic archaeon Halobacterium salinarum (earlier halobium). This enzyme was solubilised in reversed micelles of hexa...

The nitrite reductase from the extreme halophilic archaeon, Haloferax mediterranei, has been purified and characterised. H. mediterranei is capable of growing in a minimal medium (inorganic salts and glucose as a carbon source) with nitrate as the only nitrogen source. The overall purification was 46-fold with about 4% recovery of activity. The enz...

The halophilic malate dehydrogenase (hMDH) activity of Halobacterium salinarum was studied as a function of micelle size (ωo), in cethyltrimethylammonium bromide (CTAB)/cyclohexane reverse micelles, with 1-butanol as cosurfactant. The velocity dependence of the ωo profile depends on the buffer used, the surfactant concentration, and the salt concen...

The nitrite reductase from the extreme halophilic archaeon, Haloferax mediterranei, has been purified and characterised. H. mediterranei is capable of growing in a minimal medium (inorganic salts and glucose as a carbon source) with nitrate as the only nitrogen source. The overall purification was 46-fold with about 4% recovery of activity. The enz...

Alkaline p-nitrophenylphosphate phosphatase (pNPPase) from the halophilic archaeon Halobacterium salinarum (previously halobium) was solubilized in reversed micelles of cetyltrimethylammonium bromide (CTAB) in cyclohexane with 1-butanol as cosurfactant. The hydrolysis reaction appears to follow Michaelis–Menten kinetics. The dependency of the maxim...

Alkaline p-nitrophenylphosphate phosphatase (pNPPase) from the halophilic archaeobacterium Halobacterium salinarum (earlier halobium) was solubilised in reversed micelles of hexadecyltrimethylammoniumbromide (CTAB) in cyclohexane, with 1-butanol as co-surfactant. The hydrolysis of p-nitrophenylphosphate (pNPP) appeared to follow Michaelis-Menten ki...